>input_sequence_78498
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--------------------------------------------------------------ATGCCGTCCTCAAGTTCC
GCTTCCGTTCAAGCCTTCGCGCCACAAAACCACGGGTTCGGAACGAACACGGAGCCAATTCCGATCGAAGATGCGGC---
AGCGGCCTCGCCGCCGGTGACGGATGCCTTTGTGGTCGGCGTCGACACCGCGGACGACGTCGACGGCCGGAGGCTCAGGC
GGAAGATCTCCAACCGGGAGTCGGCGCGCCGGTCGCGCGCGCGCAAGCAGCGGCACCTCGACGACCTCCGCGCCCTGGCC
GCAAGCCTGCGGGGCGGCCGCCGCGAGCTCGCGGCGCGCGTGCACGCCGCCCGAAGCCGCGTCACTATCGTCCTCCACGC
CAACGACGAGCTCCGCGCGGAGGCCGCCGCCCTGAGCCGCCGCCTCGAGGTGGCGGCTCATCGCGCGCTCGCCCTGAACC
AGCTGTACGCCGCGGCCGCCGGTCTCGGAGCCGGGACGTTCGAGCAGGCCGCTGCCTCGCTGATCGCCTGGAGCTGA---
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>chr4D_1_TraesCS4D01G020600
GGAGTGTGCGCATGCTATGCCTGCTGAGAGCACGTTGGACCGGTTTGTGCTCTCG-----------GGTGGGTTGGATGG
GGCCTCCGATTTTGATGTTCCGTGTTGGTGTGAGGTTAGGGCAGGCGGCCACAATCATGTGCACCCTCTTCATCATTTGA
TAGGTGTAGCGACTGCTGTTGCCAAAGAAGGTTGCTTCAGACTTGTTGATGTATTTGTTTGTAAGGTCTTGTCAAATAAT
TAATAAAATGGTTGTATGCATCGCCCTGATGCACCCTGTTCATCATTTGATAGGTGTAGCGACTACTGTTACCAAAGAGG
GTTGCTTGAGACTTGTTGATATATTTGTTCGTAAAGTCTTGGAAAATAATTATTAAATGGTTGTATAATCGTCATGATGC
AGAGGCCAGGGGTCATCCTCCTTTTCGAAAAAGA------AACTAAGGAATATTGCAAGAATAACTTAAAAAGAGACAAA
TGTTGTCCAAACGTCGCAAACTCGCAATGGGAAAGCGGTGTCAAGTGGCTACGGGAGGAAATAGGAGAACCGAGCTACCT
TGTGAAGGTCGAGCTCAGTTCGGACATACCTAGGGCTGAACTATTGTGTGTTTGGCCAGGATCTAGCGGCAGAGAGGAAC
TACGACAAATTCTATATTGCTAAAGATTGTAACGATGCTATTTGATGAATGAAATCCTCTTTACCGGTAAAAAAA-TGTA
GCTGGCAATTCAAAAGATTATCTGCAACTTTTCCAACAATACGATGTACACTAATGAACTTGGACGGTCTATAGGCCTTT
TAGCATATGCCTT-AGCAATATTGGTTTGTTTTTAATCAAAATATACAATACCTAAAGTAGACAGCTCAGCAACCACTAC
---AAAATGGTCCCACAAATGATTCAAAAAATCCCGGAAATGCCCCTCTAAAACCCTCTATAAATAGCACGGCTCTTCAT
TTCTTCCCTCCCTTTTCCCCCTTCTCCTTCCTAAATCACTGAATTACCACTCTACCCTTATCATGCCGTCCTCAAGTTCC
GCTTCCGTTCAAGCCTTCGCGCCACAAAACCACGGGTTCGGAACGAACACGGAGCCAATTCCGATCGAAGATGCGGC---
AGCGGCCTCGCCGCCGGTGACGGATGCCTTTGTGGTCGGCGTCGACACCGCGGACGACGTCGACGGCCGGAGGCTCAGGC
GGAAGATCTCCAACCGGGAGTCGGCGCGCCGGTCGCGCGCGCGCAAGCAGCGGCACCTCGACGACCTCCGCGCCCTGGCC
GCAAGCCTGCGGGGCGGCCGCCGCGAGCTCGCGGCGCGCGTGCACGCCGCCCGAAGCCGCGTCACTATCGTCCTCCACGC
CAACGACGAGCTCCGCGCGGAGGCCGCCGCCCTGAGCCGCCGCCTCGAGGTGGCGGCTCATCGCGCGCTCGCCCTGAACC
AGCTGTACGCCGCGGCCGCCGGTCTCGGAGCCGGGACGTTCGAGCAGGCCGCTGCCTCGCTGATCGCCTGGAGCTGATAG
GCGCCG----TGCGTGCATGCATCATGCACGTGCACGGGTAGGGTCTACGTACTTTCTCTGGTAAACGGTAAAGAGAAGG
CACGACGTACCGTGGGATAGCTAGCTAGCTTCATCAGTCCTGAAGTGAATGTCAAAG-AAAAAAGCTTTCAGTCCTGAAG
TCTTGTGATTGGGTAGATATATCAGTCACCAAGTAAAAGAACGGGACATAATGGCACGATTAATTCGTGACC--------
-GTTAAAGGCAC-AAAAAAAAGTTGGAATGTAATTTT---ACTAAACCAACATCTAAAC-------CTTGTGTTCGTCGA
CTGGTTCCCCCTGTCCTGCCGGCTCCATATATATTTTCTCTTCTGAATTCTTGGTTATGCATTGCACGACCGAGTACGTA
CGTAGCACCATTCAGTGGTTCTGACATGAGCACTGGTATATCTCGCCTCAACTACAAACGCATAAATAGTGGTCTAAATT
GATTATGGTGAGACGGATCTTGGCCGTTAAT----ATTAGTGGAGGC-------------GATCGACGATCTG----TCG
AGTCCCATGATTGGCCGTGTACGTGGTACTACGTCCTTGTTTAATTAGTGGTGGGGAGACAG----GCCAGATGCTCTCT
GCT----TGCTTTCCAGGTTAGTTCAGCAGAGAGTAATGTAATGTAA--TGCGGCCCCTAGCTAAGCAAAAGCTGTCTGC
TTTGGGCGTTAATATCGTTTTCGGGTGGGATTAGATTTGTATTTTGTGCGGGTGTCATGTCGCGCTCGCCACGTCGAAAG
CGGGGAGCGGGGCGCTGCACGTCTCCGAATTCGTGGTTTAGATTCGGTAACGATCCTTTTCC-GGTGATCGCATCCGATT
ATGCTTTGCGTTGCATACCTTAATCTCTCACCTCATCGCAAAGAAAGCAAAAAAAAGAGGAGAGAAGCCAACGTAATCTC
GGCCTGGTGCATCGTTTTTTAGCTGAAGCGTAGCTAAGATGGTTAGGTTCCTCGTGATGGAACCAACCCATCAGGGTTCA
AGTACTAGACTTTG
>chr4B_1
GGAGCGTGCGCATGCGGTGCCCGCAGAGAGCATGTTGGACCGGTTTGTGCTCTCGACCCGCCGTTGGGCGGCTTGGTTGG
GGCCTCCAGTTTTGATGTTCGACATTGGTGTGAGGTCAGGGCAGGCGGCCACAATCATGTGCACCCCCTTCATCATTTGA
TAGGTGTAGCGAGTTTTTTTGCCAAAGAAAATGGCTTCGGATTTATTGATGTATTTCTTTGTGAGGTATTGATGAATAAT
TAATAAAATAGTTGTATGCATCGCCCA-----------------------------------------------------
---------------------------------------------------------------------------GATGC
AGAGGCCGGGGGTCTTCCTCCTTTCTGAAAAAAGAAAGATAATTGAGGAATAATACAAAAATAATTAAAAAAGAGATAAA
TGTTGTCCAAAGGTCGTAAACTCGCAATGAGAAAGTGGTGTCAAGTGGCTAGGGGAGGAAGTAGGAGAACCGAGCTACCT
TGTGAAGGCCGAGCTCAATTCGGATATACCTAGGG----------------TTGGCTAGGATCTAGCGGCGGAGAGGAAC
TACGACAGATTATTGCC----AAAGATTGTAACGATGCTATTTGATGAATGAAATCCTCTTTACCTGT-AAAAAA-TGTA
GCTGACAATTCAAAAGATTATCTGCAACTTTTCT---AATACGATGTACACTAATGAACTTGGACGGTCTATAGGC-TTT
TAGCATATGCCTTGAGCAATATTGAATTATCATG----------TACAATACCTAAAGTAGACAGCTCAGCAACCACTAC
---AAAATGGCCCCACAAAAGATTCAAAAAATCCCAGAAATGCCCCTCTTAAACCCTCTATAAATACCACGGCTCTTCAT
TTCTTCCCTCCCTTTTCCTCCTTCTCCTTCCTAAATCACTGAATTGCTATTCTACCCTTATTATGCCGTTCTCAAGTTCG
GCTTCCCTCCAATCCTTCGCGCCACAAGATGACGGAGCACACCAGG---------AAATTCCGATCGAAGATGCGGC---
AGCGGCCTCACCGCCGATGACGGACGCCGCTGCGGTCGGCGTGGACACGGCGGACGACGTCGACGGCCGGAGGCTCAGGC
GGAAGATCTCCAACCGGGAGTCGGCGCGCCGGTCGCGCGCGCGCAAGCAGCGCCGCCTCGAGGACCTCCGCGCCCTCGCG
GCAAGCCTGCGGGGCGGCCGCCGCGAGCTCGTGGCGCGTGTGCACGCCGCGCGGTGCCGCGTCGCCATCGTCCTCCACGC
CAACGACGAGCTCCGGGCCGAGGCCGCCGCCCTGAGCCGCCGCCTCGAGGTGGCGGCTCATGGCGCGCTCGCCCTCAACC
AGCTGTACGCCGCGGCCGCCGGGCTTGGTGTCGGGACGTTCGAGCAGGCCGCTGCCTCGCTGATCGTGTGGAGCTGATGG
GCGCCG----TTCGTGCATGCATCATGCACGTACGCGCCGTCTA---ACGTACTTTCTCTGGTTGGGGTTGACCTTGGGT
-----------------TAGCTAGCTAGCTTCATCAGTCCTGAAGTGAGTGTCAAAGGAAAAAAGCTT-CGGTCCTGAAG
TCTTGTGACTGGGTAGATATATCAGTCACCAAGTAAAAGAACGGGACATAATGGCATGATTAATTCGTGACCGATCCGAT
GAAGGCATGCACTAAAAAAATGTTGGAATATAATGTT---ACTAAACCCACATCTAAGCCTTGTGGCTTGTGTTCGTCGA
CTGGTTCCCCCTGTCTTGCTGACTCCATATTTTTTAGTGTCAAAAAACGTCTTACGTTATACTAT---------------
--------CATTCAGAGTTTTTGACGTGAGCACTA----ATCTCGCCTCAACTACAATGAGTTAACTAAGGAGGATACCA
AAATTCTGGTCCTCTTGACAATTAC----------ATTAGTGGAGGCCTCACGAGTGAGTGATCGACGATCTG----TCG
AGCCCCATGATTGGCCGTGTACGTGGTACTACGTCCTTGTTTAATTAGTGGTGGGCAGACAGACATGCCAGATGCTATCT
GCTCGCTTGCTTTCCAGGTTAGTTCAGCGGAGAGTAATGTAATGTAA--TGCGGCCCCTAGCTAAGCAAAAGCTGTCTGC
TTTGGGCGTTAATATCGTTTTCGGGTGGGATTAGATTTTTATTTTGTGCCGGTGTCGGGTCACGCTCGCCACGTCGAAAG
CGGG-AGCGGGGCGCTTCACGTCTCCAAAATTGTGGTTTAGATTCGGTAACGATCCTTTTCC-GATGATCGCATCCGATT
ATGCTTTGCGTTGCATACCTTAATCTCTCACCTCGTCGCAAAGAAAGGAAAA----------------------------
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>chr4A_520
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--------------------------------------------------------GGAAGTAGGAGAACCGAGCTACCT
TGTGAAGGGCGAGCTCACTTTGGACATACCTAGGGCTGAACTATGTG----TTGGCCAGGATCTAGCGGCAAAGAGGAAC
TATGACAGATTATTGCC----AAAGATTGTAACGATGCTATTTGATGAACGAAACCCTCTTTACCCGT-AAAAAATTGTA
GCTGACAATTCAAAAGATTATCTGCAACTTTTTGC---ATACGATGTACACTAATGAACTTGGACGGTCTATAGGC-TTT
TAGCATATGCCTG-ACCAATATTGAATTATGCTTAATTAAAATACACAATACCTAAAGTAGACAGCTCAGCAACCACTAC
TACAAAATGGTCCCACAAATGATTCAAAAAATCCCAGAAATGCCCCTCTTAAACCCTCTATAAATACCACGGCTCTTCAT
TTCTTCCCTTCCTTTTCCTCCTCCTCCTTCCTAAATCACTCAATTACCATTATAACCTTATCATGCCGTTCTCAGGTTCG
GCCTCCCTCCAAACCTTCGCGCCACAGAATGACGGGTTCGGAACGAACACGGAGCAAATTCCGATCGAAGATGCGGCGGC
AGCGGCCTCGCCGCCGATGACGGACGCCGCTGCGGTCGGCGTCGACACGGCGGACGACATGGACGACCGGAGGCTCAGGC
GGAAGATCTCCAACCGGGAGTCGGCGCGCCGGTCGCGCGCACGCAAGCAGCGCCACCTCGACGACCTCCGTGCCCTCGCC
GCAAGCCTGCGGGGCGGCCGCCGCGAGCTCGCGGCGCGCGTGCACGCCGCGCGTAGCCGCGTCGCCATCGTCCTCCACGC
CAACGACGAGCTCCGCGCCGAGGCGGCCGCCCTGAGCCGACGTCTTGAGGTGGCGGCTCATCGCGCGCTCGCCCTCAACC
AGCTGTACGCCGCGGCCGCCGGTCTCGGCGTCGGGACGTTCGAGCAGGCCGCTGCCTCGCTCATCGCGTGGAGCTGATGG
GCGCCGCGCGTGCGTGCATGCATCATGCACGTGCACGGGTAGGGTCTACGTACTTTCTCTGGTAAACGGTAAAGAGAAGG
CACGACGTACCGTGGGATAGCTAGCTAGCTTCATCAGTCCTGAAGTGAGTGTCAAAG-AAAAAAGCTTTCGGTCCTGAAG
TCTTGTGATTGGGTAGATATATCAGTCACCAAGTAAAAGAACGGGACACAATGGCACGACTAATTCGTGACC--------
-AATGAAGGCATAAAAAAAACGTTGGAATGTAATGTTATTACTATACCAAACTCTAAACCTTGTGTC-------CGTCGA
CTGGTTCCCCCTGTCCTGCTGGCTCCATATTTTCTCTTCAGTGGTTCACGTAGC---------AT---------------
--------CATTCAGTGGTTCTGACATGAGCACTGGTATATCTCGCCATCAACAACAACGCATAAATAGTGGTCTAAATT
GATTATGGTGAGATGGATCTTGGCCATTAATCTCTATTAGTGGAGGC-------------GATCGACAATCTGTCGATCG
AGTCCCATGATTGGCAGCGTACGTAGTACTACGTCCTTGTTTAATTAGTGGTGGGCAGGCAG----GCCAGATGCTCTCT
GCT---TTGCTTTCCAGGTTAGTTCAGCAGAGAGTAGTGTAATGTAATGTGCGGCCCCTGGCTAAGCAAAAGCTGTCTGC
TTTGGGCGTTAATATCGTTTTCGGGTGGGATTAGATTTGTATTTTGTGCGGGTATCCGGTCGCGCTCGCCACGTCGAAAG
CGGGGAGCGGGGCGCTTCACGTCTCCGAATTCGTGGTTTAGATTCGGTAACGATCCTTTTTCGGGTGATCGCATCTGATT
ATGCTTTGCGTTACATACCTTAATC--TCAACTCGTCGCAAGGAAAGGAAAA----------------------------
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>SNPs
----S----------SS----S--S-------S-----------------------------------S--S----S---
-------SS-----------SSSS------------S-----------------------------S-------------
------------S-SS-S-----------SS-S-----S--S--S-----------S-----S----S---SSS------
---------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-------S------S---------SS------SS--------S-S-------S-S---S-----S-S---------S---
-----------S----S------------S-----S---------------S--------S-------------------
--------S--------S--------------------------SSSSSSS-----------------------------
-------S---S-SSSSSSSS--------------------------------------------S--S-----------
----S----------------------------SSSS---------------------------------------S---
------------------------SS--S-SS-----S------------------------------------------
-----------------------------------S-------------S----------------S-------------
------------------S------------------------------S-------------------S---------S
------S-S---S----------------SS------------------------S------------------------
----------------S-------S---SS--S---------------S-------------------------------
----------------------------------------------------S-----------------------S---
--------------------------------------------------S--S---------S-S--------------
------------------S--------------------------------------------------------S----
----------------------------S-S------------------------------------S----------S-
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------------------------------------------------S---------------------S---------
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-SS-S---------------S-------------S---------------------------------------------
-------------------S----------S-S--S-SSSS-SSS--SSS---SSSS-SS-S-SSSSSSSSSSSSSSSSS
SSSSSSSS------------------------------------------------------------------------
-------------------------S------------------------------------------------------
-------------------------------------------------------S------------------------
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--------------------------------------------------------SS----------------------
----------------S---------------------------------------------------------------
----------------------------------S------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_283
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-----------------------CCCTGATGCACCCTGTTCAT-------------------------------------
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>reverse_1910
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---------------------------------------------------------------------CCGAGTACGTA
CGTAGCACC-----------------------------------------------------------------------
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