>input_sequence_78409
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-------------------------------------------------------------ATGGCGTTCTCCAAGCCCG
TGGCGGCTCTCCTCCTCGCCGTGGCGCTGGCAGCGACTGCCATGTCCGCCGCCGGTCAGGATCCCCAAAACTGCAAGCCG
AGCCGCAAGGTTACGGTGCAGAACCTGTGCGGCAAGGACCTTTACCTCGGCATCGAGCCGCTGGCCAACAGCAAGCTGCT
CTACAGCCCTGGCCACCTGCTCCGCCACGGCACCCACGTGTCGTACGACGTGTGCTCGTGGACGGGGCGCGTGAAGGTGC
AGGACGCCGTGGTGACGGAGTTCCACATCGGGTACGACGGCGGGGCGTGGTACCAGGTGAGCACCGACCAGTCGCACATG
CCCATCCGTGTCTCCATCACCCCCCACGGCCACCCCCTGAAAGACCACTGCCCCACCGCCGGCTGCAACAGCGGTGGCCA
CTGCTTCGAGCACTCCGTCCCCGGCGGCAAGTGCCACGGCGTCGACGAGATCAAGATCGTCTACTACAACCCCTAG----
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>chr5B_1_TraesCS5B01G088100
TCTCCCCCTTCCTCTTCTAGGTCTTAATCATACCCATGCGGGCAACCAAACAACATGTAGTTGTATGCGCCGTGACAATG
CATGCAACTAAACAATGCGTCAAAGTTGATCCCCTAATGCAGGAAGTCCATATGTAGGCAACCAAACAACTTGAGATGTC
GCATATGGGGCTGTTTTTCCAGAGCCAGGCTAAGTGGAGAAAGGTATGCAACGCAGGTACGGTAGCCGACGGCAAACAGT
CCTAGAATCCGCGAGATCCATCGAAGATATATCCACCCGCTCTCCGACACAAACAATTTAATAACTTTTTTAGGGAAGGG
AACTTTTGGTCAATGGTTGTATATACACTCTATAA---AAAAAATAG---TAATTAAAAAATTAACAAATTCTGAAAATA
T-TTTAAAAATAAATTGACCTTTCATTGTATCGGTAAATAATCCCATAGAAAG-AAAAATTTCGTTGATTTCTTTTTAAA
AAAAGACAAAAATCGATCAAAATAGTGTGATTAGTGACTTATAATAGCAAATAGTTTTTGTATTCTTTTGGTCCTGAAGT
CGACGCTGGTTTTTTATTCGTGAAAATTTATATACTAGTGCAAAAGAAAGTCAAA-TTATTGTAAAA-AAACTTTCAAAC
TGTTTTAACTTTTTTTAATTATATAAAAATTCCTCACAAGAGA-CTATATACACCCAAAAATCAAGGGAAATTTCTTTTT
T-AGTGTTTATTTATATGTAGAATAACTATATATTCCCTACATCCC-TAATATAAAATCCTTTTAAAAATATGTTAGCTT
GAT-----------------------------------------------------------------------------
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---------------------------------------------ATCATATCTTGAGACGGAGGGAGTAGCGCTA----
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------------------------------GCAGACGCCGCAACAATCTCGAACCTTCGTGCCAAGCCTTCCCTGAGTTC
TTTTTTCTC---TTTGATTGAGTGGGAGCCTTCCCTGAGCCTATAAATACCCTTCACAGTGAGCCTTAAACCTGGACTCA
AACCACCGGCATCAGTCACTCCTCTTCACTCCTAACCAGCGAGTAACA---------GCCAATGGCGTTCTCCAAGCCCG
TGGCGGCTCTCCTCCTCGCCGTGGCGCTGGCAGCGACTGCCATGTCCGCCGCCGGTCAGGATCCCCAAAACTGCAAGCCG
AGCCGCAAGGTTACGGTGCAGAACCTGTGCGGCAAGGACCTTTACCTCGGCATCGAGCCGCTGGCCAACAGCAAGCTGCT
CTACAGCCCTGGCCACCTGCTCCGCCACGGCACCCACGTGTCGTACGACGTGTGCTCGTGGACGGGGCGCGTGAAGGTGC
AGGACGCCGTGGTGACGGAGTTCCACATCGGGTACGACGGCGGGGCGTGGTACCAGGTGAGCACCGACCAGTCGCACATG
CCCATCCGTGTCTCCATCACCCCCCACGGCCACCCCCTGAAAGACCACTGCCCCACCGCCGGCTGCAACAGCGGTGGCCA
CTGCTTCGAGCACTCCGTCCCCGGCGGCAAGTGCCACGGCGTCGACGAGATCAAGATCGTCTACTACAACCCCTAGATCC
AGCTGCTGGGTGTGTTTAATAAGTTTGCTGCTCGGTGATCTTAGTCGTACTGCAGCTGCTAGTTAGTT-ATCATCTGCTC
CAAGGAGCTATTGTACTGTCGTGTCGCGTTGTGTCGGATTTGCTGTTCAATTAGTAGTTGCGGTGGTGAATGCGTGGCTA
GAGATGTTTCATGGCCGTGCAATGAACTGCATGTCGTCAGCTCTGTATCCGTCGTTGGTGTGTTGTGT--TTTCTAGTTT
ATAAATCTGATTTACAATTTGGCTGGGTCACCGAACTGATGTTATTTTTTA----CTCGCCATCTAGTATC--ATTCAAC
GTGCATGCACGCTAAGAGGAGAAACATTCGCGCATGGCCGCACATGCCCAGATGCCCTCCCTCTCCTCGCGATGGATGAA
TCTAATGTCTGCGAGACAACTGGTAGCAAAAATGGTGTAAAATGTGATCTAGGAAGAAAAATGATGTAAAATGTGATCTA
AGAAGAGAATCTAACAGAGG-TTGTCAACGTGAAACCCGAGAGAGAACCAACGACAA-----------------------
-----------------------------TGTGGAACGATGATTAATTTCTCCCGCAGT-------GAGAACTATGCACA
AGACAGAATCA-CAGCCGCTGT----------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATTTTTATTCTTCTAAAGCATCTTCAACCCAACT
GGGTAAATTTGGCCTCTTCTTTGTTCGTACATCAATATTTGAAGATTCGAAGGCCTCGACTGGAGATGTTCCTAGCTCAT
ATTGTAC--------TACTGCAAGCGCGAGCCGGGCCGGGCCCGTCGCACCGTGAAACCAGCGGCGGCCGCCACCGCCGT
TTGTTGTTCTCTC--TTGCCGGAAGGAAGAAGCAGGGTGGGTAGATTCCATGGCATATCCTGGCCCCGGCCGGGCCCCTA
CTCAGTCTCCATCCTTATCCCACGACATCGAGAACCGGGCAAAGCAACGGCAGGGAAACCGGGAAAGCGGAAAACGTGGC
AGAGACGGGAGGCGCATCGATCGATTACTGGCAGGTGCACGCGTGTACCTACACTGCACC
>chr5D_243
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--TAGAATCCGCGAGATCCATCGAAGACATATCCACCCGCTCTCCAACACAACCAATTTAATAACTTTTTTAGGGAAGGG
AACTTTTGGTCAATGGTCGTATATACACTCTATAAGAAAAAAAATAG---TAACTAAAAAATTAACAAATTCTGAAAATA
TTTTTAAAATAGACTTGACCTTCCATTGTATTGGTAAAAAATCCCATAGAAAG-AAAAAAATCATTGATTTCTTTTCAAA
AAA-GACAAAAATCGATCAA-ATAGTGTGATTAGTGACTTATAATAGCAAATAGTTTTTGTATTCTTTTGGCCCTGAAGT
TGATGCTGGTTTTTTATCCGTGAAAATTTATATACTAGTGCAAAA-AAAGTCAAA-TTATTGTAAA--AAACTTTCAAAC
TGTTTTAACTTTTTTTAATTATATAAAAATTCCTCATAAGAGGCCTATATACACCCAAAAATCAAGGGATATTTCTTTTT
TTAGTGTTTATTTACATGTAGAATAACTATATATTCCCTACATCCCATGATATAAAATCCTTTTTAAAATATGTTAGCTT
GAATATCAT-----------------------------------------------------------------------
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---------------------------------------------ATCTCGAAACTTCGTGCCAAGCCTTCCCTGAGTTT
TTTTCTTCCTCTTTTGATTGAGTGGGAGCCTTCCCTGAGCCTATAAATACCCTTCACAGTGAGCCCTAAACCTCAACTCA
AACCACCGGCATTAGTCACTCCTCTTCACTCCAAACCAGCGAGTAACACTCCAAACAGCCAATGGCGTTCCCCAAGCCCC
TGGCGGCTCTCCTCCTCGCCGTGGCGCTGGCAGCGACTGCCATGTCCGCCGCCGGTCAGGATCCCCAAAACTGCAAGCCG
AGCCGCAAGGTGACGGTGCAGAACCTGTGCGGCAAGGACCTTTACCTCGGCATCGAGCCGCTGGCCAACAGCAAGCTCCT
CTACAGCCCTGGCTACCTGCTCCGCCACGGCACCCACGTGTCGTACGACGTGTGCTCGTGGACGGGGCGCGTGAAGGTGC
AGGACGCCGTGGTGACGGAGTTTCACATCGGGTACGACGGCGGGGCGTGGTACCAGGTGAGCACCGACCAGTCCCACATG
CCCATCCGTGTCTCCATCACCCCCCACGGCCACCCCCTGAAAGACCACTGCCCCACCGCCGGCTGCAACAGCGGTGGCCA
CTGCTTCGAGCACTCCGTCCCCGGCGGCAAGTGCCACGGCGTCGACGAGATCAAGATCGTCTTCTACAACCCCTAGATCC
AGCTGCTGGGCGTGTTTAATAAGTTTGCAGCTCGGTGATCTTAGTCGTATTGCAGCTGCTAGTCAGTGAATCATCTGCTC
CAACGAGCTATTGTCGTGTCGTGTCGTGTC------GATTTACTGTTCAATTAGTAGTTGCGGTGGTGAATGTGTGGCTA
GAGATGTTTCATAGCCGTGCAATGAACTGCATGTCGTCAGCTCTGTATCCGTCGTTGGTGTGTTGTGTGTTTTCTAGTTT
ATAAATCCGATTTAAAATGTGGCTGGGTCACCGAACTGATGTTATCTTTTA----CTCGCCATCTATCGAAAGATTCAAC
GTGCATGCACGCTAAGAGGAGAAACATTCGCGCATGGCCG--------CACATGCTCCCCCTCTCCTCGCGATCGATGAA
TCTAACGTCTGCGAGACAT-TGGTAGCAAAAATGGTGTAAAATGTGATCTAGGAAGAAAAATGATGTAAAATGTGATCTA
AGAAGAGAATCTAACAGAGGTTTGTCAACGTGAAACCCGAGAGAGAACCAACAACAA-----------------------
-----------------------------TGTGGAACGAAGATTAATTTCTCCGGCAGC-------GAGAACTATGCACA
AGACAGAATCA-CAGCCGGTGT----------------------------------------------------------
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----------------------------------------------ATTTTTAATCTTCTAAAGCATCTTCAACTCAACT
GGGTAAATTTGGCCTCTTATTTGTTCGTAGATCAATATTTGAAGATTTGAAGGCCTCGACT-----CGCTCCTAGCTCAT
ATTGTAC--------T---GCAAGCGCGAGCCGGGCCGGCCCCGTCGCACCGTGAAACCAGCGGCGGCCGCCACCGCCGT
TCGTCGTTGTCTCTTTTGCCGGAAGGAAGAAGCAGGGTGGGTAGATTCCATGGCATATCCCGGCCCCGGCCGGGCCCCTA
CACAGTCACCATCCTTATCCCACGACATCGAGAACCGGGCAAAGCAACGGCAGGGAAACCGGGAAAGCGGAAAACGTGGC
AGAGACGGGAGGCGCATCGATCGATTACTGACAGGTGCACGCGTGTACCAACACTGCACC
>chr5A_246
AATCCC--------------------------------------------------------------------------
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----------GCAAGATCCATCGAAGATATACCCACCCGCTCTCCGACACAACCAATTTAATCACTTTTTTAGGGAGGGG
AACTTTTGGTCAATGGTTGTATATACACTCTATATGAAAAAAATAGTAATTAAATAAAAAATCAATAAATTTTGATAATA
TTTTTAAATAAACTTGAAC--TTCATTATACTAGTAAAAAAATTCACAGAAAGAAAAAATTTCTTTGATTTCTTTTCAAA
AAA-GACAAGAATCGATCAAAATAGAGTGATTAGTGACCTATAATAGCAAATAGTTTTTGTCTTGTTTTTGCCCTGAAGT
CGACGTTGGTTATCTATTCGTGAAAATATATATATTAGTGCAAACGAAAGTCAAGTTTATTGTAAAATAAACTTCCAAAT
GGTTCTAACTTTTTTTGATTATAAAAACAAGG--CATAAGAGGTGTATGTACACCCAGAAAGCAAAGGGTATATCTTTTT
TTAGTGTTTATTCATATGTAGAATAACAATTCTG----TACACCCTATAATATAAAATCTTTTTAAAATAATGTTAGTGC
ATGTAGTCGTTGTTAGGTGCTCTGCGGATCTGAATGTAATTTTTATTATTTTTAGTGTTTGTTATATTACCATGATTGAA
GATGAATAAATAGGTTGGCTTTGTATAGTCATATTGAGAATGCGACTGATGTATGGCTAGATCGTGGATGACCGTGCATA
GTGGAATAAACTCTTTACCTTAAAAAAATTGGAAGTTTTTTTTAAATCGTATCTTGAGACGGAGGGAGTAGCGCTAAAAA
AATCCCATGTTTTTATGATAGAATAACTATTCCCTACGTCCCACAATTTTTTTTCCAAACTATGTTAAGCTTGAAAAAAA
TCATATCTCGATTCGGAGGGAGGAGCGCTAGCAGACGCCGCAACAATCTCGAACCTTCGTGCCAAGCCTTCGCTGAGTTT
TTTTTTCT---------TTGAGTGGGAACCTTCCCTGGGCCTATAAATACCCGTCACAGTGACCCTTAAACCACAACTCA
AACCACCGGCATCAGTCACTCCTCTTCACTCCTAACCAGCGAGTAACACTCCAAGCAGCCAATGGCGTTCTCCAAGCCCC
TGGCGGCTCTCCTCCTCGCCGTGGCGCTGGCAGCGACTGCCATGTCCGCCGCCGGTCAGGATCCCCAAAACTGCAAGCCG
AGCCGCAAGGTGACGGTGCAGAACCTGTGCGGCAAGGACCTCTACCTCGGTATCGAGCCGCTGGCCAACAGCAAGCTCCT
CTACAGCCCTGGCTTCCTGCTCCGCCACGGCACCCACGTGTCGTACGACGTGTGCTCGTGGACGGGGCGCGTGAAGGTGC
AGGACGCCGTGGTGACGGAGTTCCACATCGGGTACGACGGCGGGGCGTGGTACCAGGTGAGCACCGCCCAGTCGCACATG
CCCATCCGTGTCTCCATCACCCCCCACGGCCACCCCCTGAAAGACCACTGCCCCACCGCCGGCTGCAACAGCGGCGGCCA
CTGCTTCGAGCACTCCGTCCCCGGCGGCAAGTGCCACGGCGTCGACGAGATCAAGATCGTCTTCTACAACCCCTAGATCC
AGCTGATGGGTGTGTTTAATAAGTTTGCAGCTCGGTGATCCTAGTCGTATTGCAGCTGCTAGTTAGTTAATCATCTGCTC
CAACGAGCTATTGTCGTGTCGTGTCGT--C------GATTTGCTGTTCAATTAGTAGGTGC-GTGGTGAATGTGTGACTA
GAGATGTTTCATTGTCGTGCAATGAACTGCATGTCGTCAGCTCTGTGTCCGTCCTTGGTGTGTTGTGTGTGTTCTAGTTT
G--AATCTACTTTAAAATTTGGCTGGGTCATGGAACTGCTGTTTTTTTTTTTTTGCTTGCTATCTATCGAAAGATTCAAT
GTGCATCCACGCTAAGGGGAGAAACATTCGTGCATGGCCG--------CACATGCCCTCACTCTCCTCGTGATGGATGAA
TCTAA-------------------------------------------------------ATGATGTAAAATGTGATCTA
GGAAGAGGAACAAACAGAGG-TTGTCAATGTGAAGCCCAAGAGAGAGCTGAGATAAATCTAAATGATGTAAACATTCGTG
CATGGCCGCACATGCCCTCCCTTTCCTCGTGTGGAACCAAGATTAATATCTCCGGCAGCGAGAACTGAGAACTATGCACA
AGACAGAATCATCAGCCGCTGTCTATTTTTAGAAGTGCATGACTCTGATGAAAGAGACTAGACAGTGTATGCTATAGTCA
ATGCGACAGCATGTTATACGTAACACCCTATGGCTCGACCTCTTTTGATACCATATAAAAATGTGTTTTATAATCAATGC
AACCAAAAAATCGATCTGATGAAAGAAAGCACATTATATATCAATAATTTTTAATGTTTTAAAGCATCTTCAACTCAGCT
GGGTTAATCTGGCCTCTTATTTGTTCCTAGATCAATGTATGAAGATTTGAAGGCCTCGACTGGAGACGCTCTTAGCTCAT
AATAAGGACGTATTTTACTGCAAGCGGCAGCA------GCCCCGTCGCACCGTGAAACCAGCGGCGGCCGCCGCCGCCGT
TCGTCGTTGTCTC--TTGCCGGAAGGAAGAAGCAGGGTGGGTAGATTCCATGCAA-ATCCCGGCCCCGACCGGGCCCCTA
CACAGTCACCATCCTTATCTCACGACATCGAGAACCGGGCAAAGCAACGGCAGGGAAACCGGGAAAGCGGAAAACGTGGC
AGAGACGGAAGGCGCATCGATCGATTACTGACAGGTGCACGCGTGTACCTACACTGCACC
>SNPs
SS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS--------------------------------------------------S---------------------------
-----------------------------------------------------S--------------------------
----------S--S-----------------S------S------------------------S------------S---
---S-------------------------------------------------------------------S--------
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------------------------------------S-----S--------------------------S----------
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--S-----------------------------------------------------------------------------
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------------------------------------------------S-------------------------------
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-------------------------------------------------------------------------------S
-------------------------------------------------------------------------SS-----
-------------------------------------------------------------------------------S
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-----------S-----------------------------------------------------------------S--
-------------S------------------------------------------------------------------
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--------------------------------------------------------------S-----------------
----------------------------S--------------------S------------------------------
---S----------SS----------S--SSSSSSS------------------------------------S-------
------------S-------------------------------------------------------------------
--------------S---------------------------------------------------SSSSS---------
----------------------------------------SSSSSSSS--S-----------------------------
-----S------------SS------------------------------------------------------------
----------------------------------------------------S---------------------------
---------------------------------------S-------------S----S---------------------
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-----------------------------------------------------S--------------------S-----
------------------S----------S-----------------S------------------S-S-----------
---------------------------------------S----------------------------------------
-S--S---S---------------------------------------------------S-------------------
-S-----S------------------------------------------------------------------------
------------------------------S-----------------------------
>forward_176
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----------------------------------------------------------------------------TGTC
GCATATGGGGCTGTTT----------------------------------------------------------------
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>reverse_1947
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--------------------------CGTTGTGTCGGATTTGCTGT----------------------------------
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