>input_sequence_78405
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---------------------------------------ATGGGCATCTCCAGCATGCCGGCGCCCAAGGAGAGCCTCCT
GATCTACCTGCTCTACCACGCCGTCGTCTCGATCGCCGCCCTGGCGGGCCTCCTCCGCGCCGCGCTCGTCTTCCTCGGCC
TGCCCGCGCCGCCCTCGCTGCTGGCCGGGGAGGACGCCGACGGCGCCGACCAGCTCACGGCCGCCACCCCGGCGGGCCCC
AGCCTGGCCGAGAGGTTCAGGAGCAGGTTCCGCCCCGCGCGGTTCGGCCGGAGGCGGGGCGCGGCGGCCTCGCCGACGCC
CGACTGCCGCGTCTGCCTTGTTCGCTTCGAGGCGGACGCCGTGGTGAACCGCCTGCCCTGTGGCCACCTCTTCCACCGCG
CCTGCCTCGAGACCTGGCTGGACTACGACCACGCCACCTGCCCGCTCTGCCGCTCCCGGCTCCTCCCGGCCGCCACCACC
GCCGCCGACGAGTCGTGGTCGCCGCCGGCCCCCACCCTGACGGCCTGGATTTAG--------------------------
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>chr5A_1_TraesCS5A01G253700
CCAAGACTGGTCGCGCCCGTAACTGCGTCGACGGGGAGGGGACGTGGTGCTAGTGCAGTGGCGTACGTACCAGGAGATCG
ATTCCCGC------TCGGTGCACGGGCTGACCGTGACCGGCCGG---------GCGTCGGGTCGGGGTCGGTTCGACCGG
CCGGCCGCAGTCGTGCAGGCACGGCAACCCGATCGGCGAGCTGATCCGA----------ACCATTCCTGCAGAATCGGAA
GGAAATACTAGTACTGCTTCCAAAACAAAAGATTCGGGGAAAAAAATCCCGTGTCTTTTCAACTG---------------
-----------AAATGAGGCTGCGATAATGTCTTCCGAGTCAAGCACGTCACGGTTCGGAGCGGATAAATGGCAGGAATC
GTGCTGAGCCGCTTACGTTCGGT---AGGCCGAATTGAATTCCCTTTCGCCCTCACCTTTC--TGATATGGATCTGTCGG
-----------AGCCAATCGGCCTCGCCAATCGCGCCCGACGATTTTCTTCCGGGAGGGCGCACTGTCCCGTGACAGTGA
GATCGGTCGCTCGACGTTGTACCGTCTCGTCGCCGGTGCGGTGCACTGCACGTGCTACTACAAATGGGTCCACCGGGTCT
TGGATCGGCCGGCCCAAATAATTGGCCTCAGGAACCATGCACGCATTATTGGGCGCCACGAACCGAACCAGAGCGGGGAA
TTATTGGGCGCCCACGATCGAACCGCACCGCACCGCATGTGGGGTGTCCCCCCCTCCTCCCCCTCTGGGATGAGATCGGG
CGTCCGTCGCGCGGATCCGACGGCGGCGGGCTGCCGAACACGGGTCGCGGTGCACCACCCGAACGAGATGGGATGGATAG
GGAGGTGACACCAGCAGCCCCCGGGCCGGCTATAAATGCGCCCACCCCGACTCCCCCTCCCTCCCTCACTGTATCCATCC
CACCACACCCACACCGCACCGCTCCCTCGCCCAGACCACCCC------GAAAGAAGGCGCAAATTGCAGACGGGTCCCCG
GATCGATCCCCATTCCTCCTCCA------GGCCGCCGCGATGGGCATCTCCAGCATGCCGGCGCCCAAGGAGAGCCTCCT
GATCTACCTGCTCTACCACGCCGTCGTCTCGATCGCCGCCCTGGCGGGCCTCCTCCGCGCCGCGCTCGTCTTCCTCGGCC
TGCCCGCGCCGCCCTCGCTGCTGGCCGGGGAGGACGCCGACGGCGCCGACCAGCTCACGGCCGCCACCCCGGCGGGCCCC
AGCCTGGCCGAGAGGTTCAGGAGCAGGTTCCGCCCCGCGCGGTTCGGCCGGAGGCGGGGCGCGGCGGCCTCGCCGACGCC
CGACTGCCGCGTCTGCCTTGTTCGCTTCGAGGCGGACGCCGTGGTGAACCGCCTGCCCTGTGGCCACCTCTTCCACCGCG
CCTGCCTCGAGACCTGGCTGGACTACGACCACGCCACCTGCCCGCTCTGCCGCTCCCGGCTCCTCCCGGCCGCCACCACC
GCCGCCGACGAGTCGTGGTCGCCGCCGGCCCCCACCCTGACGGCCTGGATTTAGG---GACG-----AGTGGAGGGAAGA
GAAGAGAGAGATTCGCCCCGTCGCGTCGCCCCCGGCTATGTGCTAGCTCCGTGTGTGGCCTCTCCGTGTGCGCGTAGGAA
TTTAGATGGATCCTA----GCAGAGGGCTCTTATGCCCCTCGCCTTTCGCATTTGCCTTTTGGTTTCGTTTTCTGTACGC
CTCGTGCCATCGCTGTACCCTGTAAATATTTTTCAGCAGAGAGCGCTCCCACCGGGTGTAGCGCTTTGTGTGATGAGAAA
TCTGTGTACGGCTCTCGGCTTTTTTTACGAGAAACGGAAAATTGATGGAACAAGGATTGTGTGTCTTATGAACACCAGAG
GGCCGGTGTTCTTGCTTGCCTCTTGGATGCCCCTAGCTTGTCTCTCCAGATATTTGTGGAGAAAGTTACTATTTTTTTCT
TCTTATTTTACTCTTTCCATGTATGCCGTTGTACTAGCTAATCTCAACAAGTG---------------TTTCTGAAATCG
GAGCAAGAAACCACCAATTATTAAAACACGATAGTTATTAAAC---CTGATCAATGATCAATAAGACGGTGCTATTCGGG
-------------------------------------------------TACTTTCTGGTGGCGTTTATTA-AATCAGAT
CAAGAAACAACTAGTACTA--CTACCAATTTTTACA-AAGTGTTCATTAAACCAGATGAAGAAACCACTAAAA--AGCAA
TCGCTACTGGTG----TTTATTAATCCGGATCAAGAAACCACTACTATTCAATCGGGTAATTTCTAGAGTT-----AAAT
AAACCAGATGAAGAAACCAGCACTACAATTCGGGTAAATTCTCCGAGGCTCCAAACAAACGGCGAGGGAAT-CTGCACTA
ATCAGGAGTA---TAAAACCAGTAGG-GTTGTTGGTTGAGTGATCGATTGTTTTTGGGGGGTGGCGTTGCGGGTATCCCC
GGAGCAATTAGGCAGGGGAGACAAGGCGCTGAAAGGCACGGCAACGGCAGCGGATTGTTTATGCGGG------CGGGGGC
GGGTCACATGGATTACGGATACGTGCTTATCAACGTGGC
>chr5D_1
CCAAGACTGGTCGCGCCCGTAACTGCGTCGACGGGGAGGGGGCGTAGCGCAGC-GCAGTGGCGTACGTACCAGGAGATCG
ATTCC------AATTCGGTGCACGGAGCGATCGTGACCGG------------------------------------CCGG
CCGGCCGCAGTCGTGCAGGCACGGCAACCCGATCGCCGAGCTGATCCGA----------ACCATTCCCGCAGAATCGGAA
GAAAATAGTA---CTTCCTCCAAAAGAAAAGATTCGGAAG-AAAAATCCTCCGTCTTTTCAACTG---------------
-----------AAATGAGGTTGCGATAATGTCTTCTGAGTCAAGCACGTCACGGTTGAGAACGGATAAATGGCAGGAATC
GTGCCGAGCCGCTTACGTTCGGTAGTAGGCCGAATTGAATTCCCTTTCGCACTCACCTTTC--TGATTTGGATCTGTCGG
-----------GGCCAATCAGCTTCGCCAATCGCGCCCGACGATTTTCTTCCGGGGGAGCGCACTGTCCCGTGACAGTGA
GATCGGTCACTCGGTATCGTACCATCTCATCTCCGGTGCGGTGCACTGCACGT------ACAAATGCGTCCACCGGGTTT
TGGATCGGCCGGCCCGAATAATTGGCG-CAGCAACCATGCACACATTATTGTACGCCACGGACCGAACCAGAGCGGGGAA
TTATTGGGCGCCCACGATCGAACCGCAT-----CGCATGTGGGGTGTCCCCTGCCCAAGCGCGGGGAATT----ATGGGG
CGTCCATCGCGCGGATCCGACGGCGGTGGGCTGCCGAACACGGGTCGCGGTGCACCACCCGAACGAGATGGGATGGATAG
GGAGGTGACACCAGCAGCCCCGGCCCGGCTTATAAATGCGCCCACCCCGACTCCCCCTCCCTC----ACTGTATCCATCC
CACCACACCG------CAGC-------CGCTCAGACCGCCCCGCCCCCGAAAGAAGGCGCAAATTGCAGACGGGTCCACG
GATCGATCCCCAA---TCCCAATCTTCCCGGCCGCCGCGATGGGCATCTCCAGCATGCCGGCGCCCAAGGAGAGCCTCCT
GATCTACCTGCTCTACCACGCCGTCGTCTCGATCGCCGCCCTGGCGGGCCTCCTCCGCGCCGCGCTCGTCTTCCTCGGCC
TCCCCGCGCCGCCCTCGCTGCTGGCCGGCGAGGACGCCGACGGCGCCGACCAGCTCACGGCGGCCACCCCGGCGGGCCCC
AGCCTGGCGGAGCGGTTCAGGAGCAGGTTCCGCCCCGCGCGGTTCGGCCGGAGAAGGGGCGCGGCGGCGTCGGCGACACC
CGACTGCCGCGTCTGCCTGGTGCGGTTCGAGGCCGACGCCGTGGTGAACCGCCTCCCCTGCGGCCACCTCTTCCACCGCG
CCTGCCTCGAGACCTGGCTGGACTACGACCACGCCACCTGCCCGCTCTGCCGCTCCCGCCTCCTCCCGGCCGCCGCCTCC
GCCGCCGACGAGTCGTGGTCGCCGCCGGCGCCCACCCTGACGGCCTGGATTTAGAGAAGACG-----AGCGAAGAGACGA
GAAGAGAGAGATTCGCCCCGTCGCGTCGCCCCCGGCTATGTGCTAGCTCCGTGTGTGGCCTCTCCGTGTGCGCGTAGGAA
TTTAGATGGATCCTAGCAGGCAGAGGGCTCTTGTGCCCCTCGCCTTTCGCATTTGCCTTTTGGTTTCGTTTTCTGTACGC
CTCGTGCCATCGCTGTACCGTGTAAATATTTTTCAGCAGAGAGCGCTCCCACCGGGTGTAGCGCTTTGTGTGATGAGAAA
TCCGTGTACGGCCCTTGGCTTTTTTTACGAGAAACGGAAAATTGATGGAACTAGA----TGTGTATTATGAACACCCACC
AGATG---GTGTT-CTTGCCTCTTGGATGCCCCTGACTTCTCTGTCCAGATATTTATGGGAAAATCATTCCTAAAAGTTT
CCTTATTTTACTCTTTCCCTGCGCACCGTTGTATTACCAATTTCAGGAACTGGTAGCTGAGCAAGTGTTTTGTAAAATCA
GATCAAGAAGCCACTGCTAATCGTTGCGGGTGT-TTATTAAAC---CA-------GATCAAGAAACCAGTGCTATTCGGG
TAGTACTACTTTGTA----------------------------------------GTAGTAGCGTTTGTTAGAACCAGAT
CAAGAAACC------ACCA--CTACTAATTTTTACGTAAGTGTTCATTAAACCAGATGAAGAAACCACCAAGCGGAGCAA
TCTGTGCTGGTATTTATTTATTAAACCAGATCAAGAAACCATTGCTATTCG---GGGTAATTTCTAGCGTTTATTAAATT
AAACCGGATCGAGAAACCACCACCACTATTCGGGTATTTTTTACCAGGCTCCAAACAAACGGCGAGGGAAT-CTGCACTA
ATCAGGAGTA---TGAAACCAGTGAGAGTTGTTGGTTGAGTGATGGATTATTTTTGGGGGGTGGCGTTGCAGGTATCCCC
GGAGCAATTAGGCAGGGGAGACAAGGCGCTGAAAGGCACGGCAACGGCAGCGGATTGTTTATGCGGG------CGGGGGC
GGGTCACATGGATTACGGATACGTGCTTATCAACGTGGC
>chr5B_1
CCAAGACTGGTCGCGGCCGTAACTGCGTCGATGGGGAGGGGACG------TAGTGCAGTGGCGTACGTACCAGGAGATCG
ATTCCCATCCCAATTCGGTGCACGGACTGATCGGGACCGGCCGGGCGGGGCTCGCGTCGGGTCGGGGTCGGTTCGACCGG
CCGGCCGCAGTCGTGCAGGCACGGCAACCCGATCGGCGAGCTGATCCTCCTCCGGGATTACCATTCCCGCAGAATCGGAA
GGAAATACTA---CTATTTCCACGAGAAAAGATTCGGAAG-AAAAATCCTCCGTCTTTTCAACTGAAATGACCGCCGCAG
AAAGAAAACTGAAATGAGGTTGCGATAATGTCTTGTGAGTCAAGCACGTCACGGTTCGCAACAGATAAATGGCGGGGATC
GTGCTGAGCCGCTTATGTTCGGTACGCTGCG---TTGAATTCCCTTTCGCACTCAGCTTTTTTTGATTTGGATCGGTCGG
GGCCGTCAGCCAGCCAATCAGCTTCGCCAATCGCGCCCGATGATTTTC-------------CACTGTCCCGTGACAGTGA
GATCGGTCACTCGATATTGTACCATCATCTC-------CGGTGCAATGCACGT------ACAAATGCGTCCACCGGGTTT
TGGATCGGCCGGCCCAAATAATTGGCCTCAGGAACCATGCACGCATTATTGGACGCCACAAACCGAACCAGAGCGGGGAA
TTATTGGGCGCCCACGATCGAACCGCAT-----CGCATGTGGGGTGTCCCCTACCCAAGCGCGGGGAATT----ATCGGA
CGTCCGTCGCGCGGATCCGACGGCGGTGGGCTGGCGAACACGGGTCGCGGTGCACCACCCGAACGAGATGGGATGGATAG
GGAGGTGACACCAGCAGCCCCGGCCCGGCT-ATAAATGCGCCCACCCCGTCTCCCCCTCCCTC----ACTGTATCCATCC
CACCACACCAGCACCACAGC-------CGCTCAGACCGAACCGCCCCTGAAAGAAGGCGCAAATTGCAGACGGGTCCACG
GATCGATCCCCAA---TCCTCCA------GGCCGCCGCGATGGGCATCTCCAGCATGCCGGCGCCCAAGGAGAGCCTCCT
GATCTACCTGCTCTACCACGCCGTCGTCTCGATCGCCGCCCTGGCGGGCCTCCTCCGCGCCGCGCTCGTCTTCCTCGGCC
TGCCCGCGCCGCCGTCGCTGCTGGCCGGGGAGGACGCCGACGGCGCCGACCAGCTCACGGCGGCCACCCCGGCGGCCCCC
AGCCTGGCCGAGAGGTTCAGGAGCAGGTTCCGCCCCGCGCGCTTCGGCCGGAGGCGGGGCGCGGCGGCGGT------GCC
TGACTGCCGCGTCTGCCTGGTGCGGTTCGAGGCGGACGCCGTGGTGAACCGCCTGCCCTGTGGCCACCTCTTCCACCGCG
CCTGCCTCGAGACCTGGCTGGACTACGACCACGCCACCTGCCCGCTCTGCCGCTCCCGCCTCCTCCCGGCCGCCGCG---
GCCGCCGACGAGTCGTGGTCGCCGCCGGCCCCCACCCTGACGGCCTGGATTTAGG---CACGAGTGAAGCGAAGAGAAGA
GAAGAGAGAGATTCGCCCCGTCGCGTCGCCCCCGGCTATGTGCTAGCTCCGTGTGTGGCCTCTCCGTGTGCGCGTAGGAA
TTTAGATGGATCCTAGCAGAGGGC-------TCTGCTCCTCGCCTTTCGCATTTGCCTTTTGGTTTCGTTTTCTGTACGC
CTCGTGCCATCGCTGTACCGTGTAAATATTTTTCAGCAGAGAGCGCTCCTA-CGGGTGTAGCGCTTTGTGTGATGAGAAA
TTTGTGTACGGCCTTCGGCTTTTTTTACGAGAAACGGAAAATTGATGGAACAAGGA-----TGTGTTGTGAACACCAGAG
GGGCCTCTGTGTT-CTTGCCTCTTGGATGCCCCTAACTTCTCTCTCCAGATATTTATGGAAAAATCACTACT-AAAGTTT
CCTTATTTTACTCTTTCCGTGCACACCGTTGTATTACCAATTTCAGGAACTGGTAGCTGATCTTAA--------------
---CAAGAAACCATTGCGAATCGTTGCAGGTGT-TTATTAATAAAGCA-------GATCAAGAAACCAGTGCTATTCGGG
TATTTTGTACCTGTTGTTAAACCAGATGAAGAAACCAGTGCCATTCGGGTACTTTGTAGTAGCGTTTGTTA-AACCAGAT
CAAGAAACC------AATACTCTACCAATTTTTACA-AAGTGTTCATTAAACCAGATCAAGGAACCACT----GTAGCAA
TCTCTTCCGGTG----TTTATTAAG-CAAATCAAGAAACCAATACTATTC----GGGTAATTTCTAGCGTTTATTAAATT
AAACCGGATCAAGAAACCACCACCACTATTTGGGTAATTTCTCCCAGGCTCCAAACAAACGGCAAGGGAATCCTGCACTA
ATCAGGAGTACTATAAAACCAGTGGG-GTTGTTGGTTGAGTGATCGATTATTTTTGGGGGGTGGCGTTGCAGGTATCCCC
GGAGCAATTAGGCAGGGGAGACAAGGCGCTGAAAGGCACGGCAACGGCAGCGGATTGTTTATGCGGGCGGGGGCGGGGGC
GGGTCACATGGATTACGGATACGTGCTTATCAACGTGGC
>SNPs
---------------------------------------------S-S--------------------------------
------SS-----------------S----S-------------------------------------------------
-------------------------------------------------------------------S------------
----------SSS--S---------S-----------SSSS--------SSS----------------------------
-------------------S---------------S------------------------S-------------------
--------------------------------------------------S----------------S------------
-------------------S--S--------------------------------S-S----------------------
--------S-----SS-------S----S--S---------------------SSSSSS-------S-----------S-
----------------------------------------------------S---------------------------
---------------------------SSSSSS------------------SS-S-SSS-S-SSSSSSSSSSSS------
--------------------------S-----------------------------------------------------
---------------------S-SS-S-SS---------------------------------SSSS-------------
---------SS----S--S-SSSSSSS---S------S---------------------------------------S--
------------SSSS----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------S---S-------
------------------S--S--S-------------------------------------------------------
----------------------------------------------------------S---------------S--S--
---------------------------------------------------------------------S-S--S-----
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--------------------------------S-----------------------------------------------
-------------------S------------------------------------------------------------
------------S-------------------------------------------SSS-----S---------------
--S--SSSS-S--S---------------------S---S---------------S----S---SSSSSSS-SSSSS-S-
S-----------------S--S-SS--------S--S-S-S-SSSSSS-SSS-------------------S-S-----S
--S-----------SSS-S--SSSSS--S-SSSS-------------SSSSSSSS------S--SS-S------------
-------------------------------------------------------S-S--S------S------S-----
--------SSSSSSS--------------------------------------------------------SS-------
--S--S------------------S--S-------------S--------SSSS-------------S----------S-
-----S---S---------S---S--S----------S------S-----------------------------------
-----------------------S-------------------------S--------------------S---------
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>forward_536
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------------------------------------CCGACGATTTTCTTCCGGGA------------------------
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>reverse_1931
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----------CTTGCTTGCCTCTTGGATGC--------------------------------------------------
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