>input_sequence_78402
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-------------------------------------------------------ATGGTAAAGAAGCCAGAGTACCCGT
CCTTCTATTTCGTCGAGCTCGTGTCCATCAACATCGGCGGCTACGTCTTGCCGGTGCCGCCGTCCCTGTTCACGAACGGG
GGCACCCTCCTCGACTCCGGCACGATCCTTACGTACCTCCCCGCGGCGGCCTACACCTCGCTCCGCGACCGGTTCAAGTT
CACCATGAAGGGGAACAAGCCGGCGCCGGCATACGACATCCTCGACACGTGCTATGACTTCACCGGCCAGAGCGCCATCT
TCATACCGGCGGTGTCCTTCATATTCAGCGACGGCGCCGTGTTCGACCTTAACTTCTACGGGATCATGATCTTCCCAGAC
CCAAGCAAGCCGGCCATCGGGTGCCTCGCGTTCGTCTCGAGGCCGACGGCCATGTCATTCAGCATTGTCGGCAACACACA
GCAGCGGTCGACGGAGGTGATCTACGATGTTACAGCGCAGAAGATCGGTTTTGTCCCGTTCAGTTGCTGA----------
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>chr5A_1_TraesCS5A01G125300
CGAGTCAGCTGCTATGATCCCGACACACATACAGGTAGGAGTATAGAACATATTACCCTAACACTTTAATACATTCATTT
CTTGGACGAGTAATTCCGAACGAAGGGAGTAGATCCCGCGCTACCGATGCCCCTTTGAGCCACAGTTATTTCCGGATACT
GAATTATTGATGACACTGCTTGCAAACGATCCACAGTTGCGGCCGTCTGGAAACAAGCTCGCCATCCATCCCGCTTGCAG
CAGCGGGTCCGACTTCCAGCAGGCAGGGCTCCAGAACGACATCCTCCTCCACGACAGTGCCCGTCTGACCACCCTGCTCC
AGCGGTCAGCCTTGGCTTCTTCAAACGACATGGTCATGGCTCCAGCTCCCGACATCGGCCGTATTCCGTGGCCGTCTGTC
GCGGCACCAGCAGAGGCGCCATCCGTGACCATCCCGGACCGAACGGGGACTTCCCTCGACACGCT---GGAGTTCGTCGT
GGTTGTCGGTTTCGGGACGCCGGCGCGGTCGTCCGCCATAATGTTCGACACCGGCAGCGACATATCGTGGATCCAGTGCC
AGCCCTGCTCCGGCCACTGCTACCCGCAGCACGACCCCATCTTCGACCCCACCAAGTCGACCACCTACAAGGCCGTGCCC
TGCGGAACGCCGGAGTGCATGGCCGCCGGCGGCCAGTGCAACGCCACCACCTGCCTGTTTTCCGTCCTCTACGGCGATGG
CTCGTC---------CACGTCCGGCGTCCTCTCCCAAGAGACGCTGTCCTTCTCCTCCTCTCGCACGTTCCCCAGCTTCG
CTTTCGGATGCAGCGAGCAAAACGACGGCGGGTTCGGCGAGGTGGACGGGCTCCTCGGCCTTGGCCGTGGCCAGCTCTCC
CTACCCTCACAGGCCGCTCCGTCGTTTGGCGGCACCTTCTCATACTGCCTCCCGTCGTTCAACACCACG---CCTGGGTA
CCTCAGCATCGGCTCCACGCCGGTCTCCGGTAACAAGCAGGTCCAGTACACGGCGATGGTAAAGAAGCCAGAGTACCCGT
CCTTCTATTTCGTCGAGCTCGTGTCCATCAACATCGGCGGCTACGTCTTGCCGGTGCCGCCGTCCCTGTTCACGAACGGG
GGCACCCTCCTCGACTCCGGCACGATCCTTACGTACCTCCCCGCGGCGGCCTACACCTCGCTCCGCGACCGGTTCAAGTT
CACCATGAAGGGGAACAAGCCGGCGCCGGCATACGACATCCTCGACACGTGCTATGACTTCACCGGCCAGAGCGCCATCT
TCATACCGGCGGTGTCCTTCATATTCAGCGACGGCGCCGTGTTCGACCTTAACTTCTACGGGATCATGATCTTCCCAGAC
CCAAGCAAGCCGGCCATCGGGTGCCTCGCGTTCGTCTCGAGGCCGACGGCCATGTCATTCAGCATTGTCGGCAACACACA
GCAGCGGTCGACGGAGGTGATCTACGATGTTACAGCGCAGAAGATCGGTTTTGTCCCGTTCAGTTGCTGATAGTTATGTT
GAAGTTCTGGTTGGTAAATAAGTGAAGAGTACATTTCAAAAATAAATAAATAAGTGAAGAGTGTTTTTTTAA-GGTTGCT
CACCACATTTGCCATGCAATAATAAGTGAAGAGTATAGATCGTTCAGGCCGTGCGTACTCGCCGACCCGGATGTGTTTAC
GCAAGAACTAGCTGCTACTGCGATTAGTCCTGGCCATGGGCAGCCCGACCCGACCTTGTCCATCCCGGGCTCGGGCCTAG
GTTTTGAGCCCAAAGCCCGGGCCAGGCCGGGTCTGGGCCCGTCGATTTCGTCATTTAAGGAAGAGGCCCGGCCCATGGCC
CGAGGCCCGACGGGTTTTTAGTGTGATGAGCCGGGCTCGGGCCCGATTTTTAGGCTTGACGCCCAGGCCGGGCCGAGCTC
GAGCCTGGGTTTTTTGCGTCGGGCTTTGGTTGGCCCGGCCTAAAGCCCGGCCCGGCCTGAGAAATGGCCAGGTATAACTG
CGATGGCTCTAAGTTGGTGAGGCATGGTTGATGTTGAAGATATGTATGTGTTCCTTTTGATTTGCAAACTTTATGTAAAA
TGTGAGGTTTTTCTTTGTATAAAATCTGTAGAGATA----------------------------------CTAAGTTCCC
TTGCATTGAAGCGCTCATGTGCTCGAGGGTTGTGGTCCCTTGAATTGATGTGCTCCTGTGCTTCGATGGTTGTGGGGTCA
CTAAGGCCCCATGC-TAAGTGTGTGTTGTTTAGTTTTATTTTTTTCTCTTTTTTCCTTTTA--TTCTTTTCATATTTTAT
TTCATGAGCACTTCTTAAAATTTGTGTACTTTCAAAAACATAAAGATATTTTTT-AAATCAAATTCGTTAATATTGATTA
AAGT---GGATATTTGTAAAGTTCACGTTCATTTAAAGTTTGTGAATATTTTTTAAACCATGAATATATTTTAAATTCAT
GAATGTTTCTAAAGTTCATGGTTTTTGAAAGTCATAATATTTTTAAATTTCTTTAAACATCATTTAATTTAA
>chr5D_1
CGAGTCAGCTGCCATGATCCCGACACGCATACAGGTAGGAGTATAGAACATATTACCCTACTACCGATGTTAT-------
--------------------------------------------------CCGTTTGAGCGACAGTTATTTCCGGATACT
GAATTACTGATGACACTGCTTGCAAACGATCCACAGTTGCG-CCGTCTGGAAACAAGCTTGCCATCCATCCCGCTTGCAG
CAGCGGGTCCGACTTCCAGCAGGCAGGGCTCCAGAACGACATCCTCCTCCACGACAGTGCCCGTCTGACCACCCTGCTCC
AGCGGTCAGCCTTCGCTTCTTCAAACGACATGGTCATGACTCCAGCTCCCGACATCAGCCATATTCCGTGGCCATCTGTC
GCGGCACCAGCAGAGGCGCCATCCGTTACCATCCCGGACCGAACGGGAACTTCCCTCGACACGCT---GGAGTTCGTAGT
GGTTGTCGGTTTCGGGACGCCGGCGCGGTCGTCCGCCATAATGTTCGACACCGGCAGCGACGTATCATGGATCCAGTGCC
AGCCCTGCTCCGGCCACTGCTACCCACAGCACGACCCCATCTTCGACCCCACCAAGTCGACCACCTACAAGGCCGTGCCC
TGCGGAACGCCGGAGTGCACGGCCGCCGGCGGCCAGTGCAACGCCACCACCTGCCTGTTTTCCGTCCTCTACGGCGATGG
CTCGTC---------CACGTCCGGCGTCCTCTCCCAAGAGACGCTGTCCTTCTCCTCCTCTCGCACGTTCCCCAGCTTCG
CTTTTGGATGCAGCGAGCAAAACGACGGCGGGTTCGGCGAGGTGGACGGGCTCCTCGGCCTTGGCCGTGGCCAGCTCTCC
CTACCCTCACAGGCCGCTCCGTCGTTTGGCGGCACCTTCTCATACTGCCTCCCGTCGTTCAACACCACG---CCTGGGTA
CCTCAGCATCGGCTCCACGCCGGTCTCCGGTAACAAGCAGGTCCAGTACACGGCGATGGTAAAGAAGCCAGAGTACCCGT
CCTTCTATTTCGTCGAGCTCGTGTCCATCAACATCGGCGGCTACGTCCTGCCGGTGCCGCCGTCCCTGTTCACGAACGGG
GGCACCCTCCTCGACTCCGGCACGATCCTTACGTACCTCCCCGCGGCGGCCTACACCTCGCTCCGCGACCGGTTCAAGTT
CACCATGAAGGGGAACAAGCCGGCGCCGGCATACGACATCCTCGACACGTGCTATGACTTCACCGGCCAGAGCGCCATCT
TCATACCAGCGGTGTCCTTCATATTCAAAGACGGCGCCGTGTTCGACCTTAACTTCTACGGGATCATGATCTTCCCAGAC
CCAAGCAAGCCGGCCATCGGGTGCCTCGCGTTCGTCTCGAGGCCGACGGCCATGTCATTCAGCATTGTCGGCAACACACA
GCAGCGGTCGACGGAGGTGATCTACGATGTTACAGCGCAGAAGATCGGTTTTGTCCCGTTCAGTTGCTGATAGTTATGTT
GAACTTCTGGTTGGTAAATAAGTGAAGAGTACATTTCATATAAAAAT-AATAAGTGAAGAGTATTTTTTTAAAGGTTGCT
CACCACATTTTCCATGCAATAATAAGTGAAGAGTATACATAGTTCAGGCCGTGCGTACTCGCCGACACGGATGTGTTTAG
GCAAGAACTAGCT-------------------------------------------------------------------
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----------------------------------------------------------------------------ACTG
CGACGGCTCTAAGTTGGTGAGGCATGGTTGATGTTGAAGATATGTATGTTTTCCTTTTGATTTGCAAACTTTATGCAAAA
TGTGAGGCTTTTCTTTGTATAAAATCTATAGAGATACTTTTTTTTAAGGGGGGGAGAATCTATACAGATACTAAGCTCCC
TTGAATTGAAGCGCT---------------------------------------CCTATGCTTCGAGGGTTGTGGGGTCA
CTAGGGCCCCATGCGTAAGTGTGTGTTGTTTAGTTTCATTTCTTCTTCTCTTTTTCCTTTTATTTTTTTTCACGTTTTAA
TTCATAAGCACTTATTAAAAATTGTGTACTTTCAAAAACATAAAGATATTTTTAAAAATCAAACTTGTTAATATTGATGA
AATTTGGGGATATTTGTAAAGTTCACGTCCATTTAAA-TTTGTGAACATTTTTTAAACCATGAATATATATTAAATTCAT
GAATGTTTCTAAAGTTCATGGTTTTTGAAAGTCATAATATTTTTAAATTTCCTTAAACATCATTTAATTTAA
>chr6B_404
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---GCATCAGCAGAGGCGCCATCCGTTGCCATCCCGGACCGCTCAGGGGATTTCCTCGACTCGCC---CGAGTTCATCGT
CGTTGTCGGCTTCGGAACGCCGGCTCAGCCATCTTCCGTGATGTTTGACACCGGCAGTGACATGTCATGGATCCAGTGCA
AGCCGTGCTCCGGCTACTGCCATCCGCAGCACGACCCCATCTTCGACCCCACCAAATCCACCACCTACGCCGCCGTGCAA
TGCGGCCAACCATTGTGCTCACGCACCGGCAGCAAGTGCAACGACACCACCTGCCTATACTCCATGGATTATGTCGACGG
CTCGTCCGAATGGAGCACATCCGGCGTCCTCTCCCAGGACACGTTGACGCTCACTTCCTCAACCAAGCTCTCCGGCGTCC
CGTTCGGATGCGGCCAGCGAAACGTGGGCAAGTTCGGCTACGTCGACGGGCTGCTCGGCCTTGGCCGTGGCCAACTCTCA
CTGTCTTCACAAGCAGGTCATTCGTTCGGCAGCACCTTCTCCTACTGTCTCCCGTCCGACAACAGCACGG---CCGGGTA
CCTCAGCATCGGCTCGACGCCGGTCTCCGGC------CAAGTCCAGTACACGGCGATGATACAAAAGTCCAGCTACCCAT
CATTGTACTTCGTCGAGCTCGTCTCCATCAACATCGGTGGTTACATCCTCCCGGTGCCACCCTCAATATTCACGAGCACC
GGCACCATCTTGGACTCCGGCACGATCCTTACGCATCTACCGGGGCAGGCATACACCGCGCTTCGCGACCGGTTCAAGTT
CACCATGCAGGGGAGCAAAACAGCGCCGCCGCAAGAAAACCTCGACACGTGCTATGACTTTGGCGGCCAGAGTGGAATCT
TAATACCGGCGGTATCACTCATATTCAGTGATGGCGCGGTTTTTGACCTCAACTTCTACGGGATCTTGACATTTCCA---
------CAGCCGACCATCGGCTGCCTCGCGTTCATGCCGCGGCCAGCGTCGACGCCGTTCTCCATCATCGGCAATACGCA
ACAGCGGTCGACCGAGGTGATATACAACGTTGCTGCGGAGAAGATCGGTTTTGTCCCCAACAGTTGCTGATA--------
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>chr7B_404
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---GCACCAGCGGAGGGGCCATCCGTCACCATCCCGGACGTGCCGGGGACCAGCGGCTTCAACATAACGGAGTTCGTCGT
CGTCGTTGGCTTAGGCACGCCGTCTCAACAATCCGCTCTGATGTTCGACACCGGCAGCGACCTGTCCTGGGTCCAGTGCC
AGCCGTGCACGGGCCACTGTTACCAGCAAAACGACCCGCTCTACGACCCGACCAAGTCCTCCACCTACGACGTCGTGCAT
TGCGGTACGCCAGAGTGCTCGGCGGCCGGTGGCAAGTGCAATGGCACCACCTGTCTCTACAACATCAACTATGGTGACGG
TTCATC---------CACATCTGGTGCGCTCTCACAGGAGACGCTGACGTTCTCCTCGTCGCGCAAGTTCTCCAGCTTCC
CATTCGGATGCGGCACGACCAACCTGGGTGACTTTGGCAGCGTCGACGGGCTGCTTGGCCTTGGCCGTGGCCAGCTCTCG
CTGGCCTCGCAGACGGCCTCCTCGTTCGACGGCACCTTCTCCTACTGCCTGCCTTCTCACAACATGACGAGGCCCGGGTT
CCTCAGCATCGGCGCCTCCCCAGACACCGGC------AAGGTCCAGTACACGGCGATGATCAAGAAGCCGCAGTACCCGT
CCTTCTACTTCGTGGAGCTCGTGTCCATCGACATCGGTGGCTACGTCCTGCCGGTGCCGCCATCCGTGTTCACCAGCAAG
GGCACCCTACTCGACTCCGGCACCACGTTCACGTACATCCCCGCGCAGGCCTACACCTTGCTCCGCGACCGGTTCAAGTT
CACCATGAAGGGGTACAAGCCGGCGGCGCCCTTCCAAGACCTCGACACGTGCTATGACTTCTCTGGCCAAAGCGTGATCT
TCCAACCAGGGATGTCCTTCAAGTTCAGTGATGGAGCCGTGTTCGATATCGACATCTTTGGGGTCATGATATACCCTTAT
GTAGACCACCCGGCCATCGGGTGCTTCGCGTTTGCGTCGAGTGATCCCACGGATCAGTTCTCCATCATCGGCAACACTCA
GCAGCGTTCTGCTGAGGTGATCTACAACGTCGTAGCCGAGAAGATTGGTTTTGTTCCGCTGAGTTGCTGAT---------
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>chr7A_519
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-----------------------------------------TGTTCGACACCGGCAGCGACCTCTCGTAGGTCCAGTGCC
AGCCGTGCACGGGCCACTGTTACCAGCAAAACGACCCGCTCTTCGACCCGACCAAGTCTTCGACCTACGACGTCGTGCGT
TGCGGTACGCCAGAGTGCTCGGCAGCCGGTGGCATGTGCAATGGCACCACCTGCCTCTACAACGTGAACTATGGTGACGG
TTCATC---------CACGTCTGGCGCACTCTCACAGGAGACGCTGACGTTCTCCTCGTCGCGCAAGTTCTCCAGCTTCC
CGTTCGGATGCGGCACGACCAACCTGGGTGACTTTGGCAGCGTCGACGGGCTGCTTGGCCTTGGCCGTGGCCAGCTCTCG
CTGGCCTCGCAGACGGCCTCCTCGTTCGATGGCACCTTCTCCTATTGTCTGCCGTCTCACAACATGACGAGGCCCGGGTT
CCTCAGCATTGGCGCCGCCCCAGACATCGGC------AAGGTCCAGTACACGGCGATGATAAAGAAGCCGCAGTACCCAT
CCTTCTACTTCGTGGAGCTCGTGTCCATCGACATTGGTGGCTACGTCCTGCCGGTGCCGCCATCCGTGTTCACCAGCAAG
GGCACCCTGCTCGACTCCGGCACCACGTTCACGTACATCCCTGCGCAGGCCTACAACTTGCTCCGCGACCGGTTCAAGTT
CACCATGAAGGGGTACAAGCCGGCGCCACCCTTCCAAGACCTCGACACGTGCTATGACTTCTCTGGCCAGAGCGTGATCT
TCCAACCAGGGATGTCCTTCAAGTTCAGCGATGGAGCCGTGTTCGATATCGACATCTTCGGGGTCATGATATACCCTTAT
GTGGACCACCCGGCCATCGGTTGCTTCGCGTTCGCGTCGAGCGATCCCACGGATCAGTTCTCCATCATCGGCAACACTCA
GCAGCGTTCTGCTGAGGTGATCTACGATGTCGTAGCCGAGAAGATTGGTTTTGTTCCGCTGAGTTGCTGAT---------
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>SNPs
------------S-------------S---------------------------------SS--SSSSS-SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------S-------------------
------S----------------------------------S-----------------S--------------------
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-------------S------------------------S-----------------S---S------------S------
--------------------------S-----------------------------------------------------
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-------------------S------------------------------------------------------------
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---S----------------------------------S-S-S----S--------------S-----------------
----------S--------------------------S--S-------------------------S------------S
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
---S---------------------------------------------S-------------------------S----
-------S-------------------S-----------------------------------------------S----
---S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------S-------------
---S--------------------------------S----S--SS---S----S-S---S----S------SS-----S
-----S-------S------S--------------------------------S---------S-S------------S-
--S-------------------------S--------S--------S----------------------S----------
---------------------------------------------------S--------------------
>forward_27
-------GCTGCTATGATCCCGACACA-----------------------------------------------------
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>reverse_1813
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----------------------------------------------------ATTTAAGGAAGAGGCCCGGC--------
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