>input_sequence_78397
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--------------------------------------------------ATGAAGATCTTCTTCCTCCTAGCTTTCCTT
GCTCTGGTAGTGAACACTGCTATTGCGCAATATGCGGAAGTTCCCAGCCCAGCTGCGCGAGCTCCCACCGCGGATGGTTC
TGGGGAATGGGTTGCGATAGCACCTAGTGCGAGTGGTTCTGAGAATTGCGAGGAAGAGCAGCCAAAGCTAGACTCTTGCA
GCGATTATGTTATGGATCGGTGTGTGACGAAGGATATGCCGCTCTCTTGGGTCTTTCCTCAGACTTGGGGGAAGAGAAGT
TGTGAGGAGGTCCAAAACCAGTGTTGTCAGCAATTGAGGCAAACGACGCCGCGTTGCCGCTGCAAGGCTATATGGACATC
AATCCAAGGCGATCTAAGTGGCTTCAAGGGCCTTCAACAAGGTCTGGAAGCCAAAATGGTGCAGACGGCCAAGAGCCTTC
CCTCCAAGTGCAACATTGATCCAAAATACTGCAACATCCCCATCACTAGTGGATATTACTGGTGA---------------
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>chr5A_1_TraesCS5A01G003300
GGTATCAATGAATTTTTTTTTGTCATGGT---ATTTTCCTTATCAATGTCTAAAACACGACTTAGTATGAATTCAGTGAA
GTTAACAGATTTATCTATAATCTGTGGGTTGGGTTTAGTCCTTGTTGTACAATTTTTTCATTTCTTTATCAAATATATTA
AAACGAGTTGCATCCATCCTAATAACCCGCACAACAATACAATTGCAGTTCCACAAAACAATTAAAAACCATAACAAATA
TTAGGCGCGAGCCACGTAGTTTCGTATGCATTACAGAGTGAAACCATGGGGAGAAGAGGACAACATCTTGGTGAGTCATT
GCTTATCATGTACTAATAACACATAAGACACATGCTCTAACAATTTTTTGGTGAAAGCTAAGAATGGTGGATCCATCTGA
AACAACCTACGGAAGTCCACAAGTTAGCGTTCATGAAAGAGTAAACTATAAAACACTTAACCATATGTTTTTTAGTA---
-CAATACAATACCAAAAGCAGGACATGGAAGTGTCACACATCATTACTCATTGTATGTTTCCACAAAAGAGTAGATACTT
TATGAAAAATGCCATCTATATAATTACCACACAATGGCTAATACATGACAGAACAAAGAAAGTTAGTGGAAGATGACATC
TAGATGCATTACTTATCATGTTCTACTACCTTGTATAACACAATCACTAGCAACATGGTCTCGATCTTTCTTTAAAGACC
CGCACAATTACAAATTAAGTTCCACAAAAAA--CCAAAGTAAGAAGCCTTGGAATAACATTACATGTGGTCTCTT-TCGA
GGAAAATTGCAGATTCAGTGCACGAAACATCATCTCAACAACTTGCTAAAATTATGTGTGCTTGCAAAGTAACTTTGGTC
ATCCAACTAAATTTGTAAGCATTCAAAAGCAACACAGAATGGTAGACATATATCATGTCACATCATCCATTATAAATAGT
GGCCTCATCTCATCTTTCATCTTCACCACTACCAAAACAACATTGACAACATGAAGATCTTCTTCCTCCTAGCTTTCCTT
GCTCTGGTAGTGAACACTGCTATTGCGCAATATGCGGAAGTTCCCAGCCCAGCTGCGCGAGCTCCCACCGCGGATGGTTC
TGGGGAATGGGTTGCGATAGCACCTAGTGCGAGTGGTTCTGAGAATTGCGAGGAAGAGCAGCCAAAGCTAGACTCTTGCA
GCGATTATGTTATGGATCGGTGTGTGACGAAGGATATGCCGCTCTCTTGGGTCTTTCCTCAGACTTGGGGGAAGAGAAGT
TGTGAGGAGGTCCAAAACCAGTGTTGTCAGCAATTGAGGCAAACGACGCCGCGTTGCCGCTGCAAGGCTATATGGACATC
AATCCAAGGCGATCTAAGTGGCTTCAAGGGCCTTCAACAAGGTCTGGAAGCCAAAATGGTGCAGACGGCCAAGAGCCTTC
CCTCCAAGTGCAACATTGATCCAAAATACTGCAACATCCCCATCACTAGTGGATATTACTGGTGATGTAGCTTCCACTGG
TGACCAATAAACTATCACATACCACTGTATGTGACCAATAAATGTGACCATGGAATAATATGTACTTTAGTTTTCCTTAC
TTATGTATGTATGTGTTTCTCTTACAAACATCTAATTATGCATGTGTCTATCAAGAAAACAATGTTAATTGTGCCAGTAC
AAAAGGAATGTGTGGAAGCGCAAATACGCCTCTCATTGCGTTTTGGTATACATGGCGAAAAAATTAAATGGGATAATTAG
GGCATACTTGTGAACAGATTTTAGTCCCAACCATGAAGGTTGTCGAGAATCAAAGAACCATTAAAAATGGAAATAACACA
AAAATGTGCCTCGGTAGAGGTTATTTTATAGGCTTTACTCACAACGGTTGGGAGGGGGTCTCCTATTGAGACCTCCTCTT
CTTCGGCGCCTTAAGCGCCCGTTCCCATAGCGGGCGCTCGCGCAGCAGCCTCGGGTGGGCCGACCCAGCAAGCACGCTCA
CACCTTCCTTTTCTTCCTTCTATCGCTAGCTCCTTCATGCACGTTTCTTTCGTTTTTCT-TTTTGCTGTTCGTCCCTTTC
GTTCACAAAAACTGAAAACCACATGGATCTGAAAATTAAAAATTTGAAAAGCAGTTCACGAATTTGAAAAAGTTCATCAA
TTTTGAAAGCAAAAAAAAG-AAAAAGTTCATCGGATTTGAATTTTTTTGCTGAATTTGAAAAGAAGTTCATCAAAATTGA
GAAAAGTTCACTGAATTCAAAAAAAGTTCATCAACTTTGAATAAAAGTTCATCAAAAATGTG------------------
-------------------------------------------AAAAGTTCACTGAATTTGAAAAAAGTTCATCGACTTT
GAATAAAAGTTCATCGATTTAA-AAAAAAGTTCATCAAATTTGAGAAAAAGT-GCATCAATTTTGCAAAAGGATTCGGCG
CCTTTGAAAAAGTTCACGCATTTATGAGAAAAG---AAAAAACAAGATAGAAAAAAAAGAAA----ACAGAAAAAATAAT
TGGCTTTCTCATATTGT
>chr5D_1
GGTACCACTGAATTTTCTTTTTATGATGGTAGATTTTCCTTGTCAATGTCTAAAACATGACTTAATATGAATTCAGTAAA
ACTAACATATTTATCTATAATCTGTGGGTTGGATTTAGTCCTTGGTGCACAATGTTTTTATTTCTTTATTAAATATATAC
AAACCATTTGCTTCTGTCCTAATAACTCGC-------TACAAATGCAGTTCCACAAAACAATGAAAAATCATAACAAATG
TTAGGCGCGAGCCACGTGGTTTCGTATGCATCACAGAGCAAAACCACGGGTAGAAGAGGACGACATCTTGGTGAGTCATT
GCTTATCGTGTACTACTAACACATAAGACACATGCTATAACAAATTTTTGGTAAAAGCTAAGAATGGTGGATCCATGTGA
AACAACCGACGGAAGTCCACAAGTTAGCGTTCATGAAAGAGTAAAGTATAAAACACTTAACCATATGTTTTTTATATAGT
GCAATACAATACCAAAAGCAGGACATGGAAGTGTCACACCTCATTACTCATTGTATGTTTCCACAAAAGAGTAGATACTT
TATGAAAAATGCCATCTATATAATTACCACACAATGGCTAATACATGACAAAACAAAGAAAGTTAGTGGAAGATGACATC
TAGATGCATCACTTATCATGTTCTAATACCTTGTATAACACAATCTCTAGCAACATGGTCTCGATCTTTCTTTAAAGACA
TGCACAATTACAAATTAAGTTCCACAAAAAA--C-AAAGTAAGAAGCCTTGGAATAACATTACACGTGGTCTCTTTTCGA
GGAAAATTGCAGATTCGGTGCACGGAACATCACCTCAATA-----------------------GCAAAGTAACTTTGGTC
ATCCAACTAAATTTGTAAGCATTCATAAGCAACACACAATGGTAGACATATATCATGTCACATCATCCATTATAAATAGT
GGCCTCATCTCATCTTTCATCTTCACCACTACCAAAACAACATTGACAACATGAAGACCTTCTTCCTCCTAGCTTTCCTT
GCTCTGGTAGTGAGCACTGCTATTGCGCAATATGCAGAAGTTCCCAGCCCAGCTGCGCAAGCTCCCACCGCGGATGGTTT
TGGGGAATGGGTTGCGATAGCGCCTAGTGCGAGTGGTTCTGAGAATTGCGAGGAAGAGCAGCCAAAGGTAGACTCTTGTA
GCGATTATGTTATGGATCGGTGTGTGATGAAGGATATGCCGCTCTCTTGGTTCTTTCCTCGGACTTGGGGGAAGAGAAGT
TGTGAGGAGGTCCGAAACCAGTGTTGTAAGCAATTGAGGCAAACGACGTCGCGTTGCCGTTGCAAGGCTATATGGACATC
AATCCAAGGCGATCTAAGTGGCTTCAAGGGCCTTCAACAAGGTCTTAAAGCCAGAACGGTGCAGACGGCCAAGAGCCTTC
CCACCCAGTGCAACATTGATCCGAAATTCTGCAACATCCCCATCACTAGCGGATATTACTTGTGATGTAGCTTCCATTGG
TGACCAATAAACTATCACATACCACTGTATGTGACCAATAAATGTGACCATGGAATAATATATACTTTAGTTTCC----C
TTATGTATGTATGTGTTTCTCTTACAAACATCTAATTATGCATGTGTCTATCAAGAAAACAATGTTATTTGTGCCAATAC
AAAAGGAATGTGTGGAAGTGCATGTACGCCTCTCACTGCATTTTGGTATAGATGGCGG-AAAATTAAATGGGATAATTAG
GGCATACTTGTGAACATATTTTAGTCCCAACCGTGAAGGTTGTCCAGAATCGAAGAACCCTCAAAAGGGAAAATAACACA
AGAATA----TCGGTAGAGGTTATTTTATAGGCTTTATTCACA-------------------------------------
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>chr5B_13
TTTTATTTGTTG-----------TGATGGTAGATTTTCCTTGTTAATGTCTAAAACATGACTTAGTATGAATTCAGTGAA
ATTAACATATTTATCTATAACATGTGGGTTGGGTTTAGTCCTTGGTGCACAATGTTTTCATTTCTTTATCAAATATATAC
AAACCGGTTGCATCCGTCCTAATAACTTGC-------TACAAATGCAGTTCCACAAAACAATGAAAAATCATAACAAATG
TTATTCGTGAGCCACGTGGTTTCGTATGCATCACAAAGCGAAACCACGAGTAGAAGAGGACGACATCTTGGTGAGTCATT
GTTTATCGTGTACTACTAACACATAAGACACATGTTCTAACAAATTTTGGGTGGATTCCTA----------------TGA
AACAACCTACGGAAGTCCACAAGTTAGCGTCCATGAAAGAGTAAAGTATAAAACACTTAACCATATGTTTTTTATA----
GCAATACAATACCAAAAGCAGGACATGGAAGTGTCACACATCATTACTCATTGTATGTTTCCACAAAAGAGTAGATACTT
TATGAAAAATGGCATCTATATAATTACCACACAATGGCTAATACATGACAAAACTAAGAAAGTTAGTGGAAGATGGCATC
TAGATGTATTACTTATCATGTTCTATTACCTTGTATAACACAATCTCTACCAACATGGTCTCGATCTTTCTTTAAAGACC
CGCACAATTACAAATTAAGTTCCACAAAAAAAAC-AAAGTAAGAAGCCTTGGAATAGCATTACACGTGGTCTCT-TTCGA
GGAAAATTGCAGATTCAGTGCACGAAACATCATCTCAACAACTTGCTAAAATTATGTGTGCTTGCAAAGTAACTTTGGTC
ATCCAACTAAATTTGTAAGCATTCAAAAGCAACACGGAATGGTAGACATATATCATGTCACATCATCCATTATAAATAGT
GGCCTCACCTCAACTTTCATCTTCGCCACTACCAAAACAACATTGGCAACATGAAGACCTTCTTCCTCCTAGCTTTCCTT
GCTCTGGTAGTGAGCACTACTATTGCGCAATATGCGGAAGTTCCCAGCCCAGCTATGCAAGCTCCCACCGCGGATGTTTT
TGGGGAATGGGTTGCGATAGCGCCTAGTGCGAGTGGTTTTGAGGATTGCGAGGAAGAGCATCCAAAGCTAGATTCTTGTA
GTGATTATGTTATGGATCGGTGTGTGATGAAGGATATGCCGCTCTCTTGGATCTTTCCTCGGACTTGGGGGAAGAGAAGT
TGTGAGGAGGTCCGAAACCAGTGTTGTCAGCAATTGAGACAAACGACGCCGCGTTGCCGCTGCAAGGCTATTTGGACATC
AATCCAAGGTGATCTAAGTGGCTTCAAGGGCGTTCAACAAGGTTTGAAAGCCAGAACGGTGCAGACGGCGAAGAGCCTTC
CCTCCAAGTGCAACATTGATCCAAAATACTGCAACATCCCCATCACTAGCGGATATTACTGGTGATGTAGCTTCCATTAG
TGACCAATAAACTATCACATACCACTGTATGTGACCAATAAATGTGACCATGGAATAATATATACTATAGTTTCC----C
TTATGTATGTATGTGTTTCTCTTACAAACATCTAATTATGCATGTGTCTATCAAGAAAATAATGTTAATTGTGCCAATAC
AAAAGGAATGTGTGGAAGTGCATATAGGCCTCTGT----GTTTTGGTATAGATGGCGG-AAAATTAAATGGGCTAATTAG
GGCGTACTTGTGAACAGATTTTAGTCTCAACCGTGAAGGTTGTCGAGAATCGAAGAACCCTCAAAAGTGAAAATAACACA
AGAATGTGCCTCGGTAGAGGTTATTTTATAGGTTTTATTCACA-------------------------------------
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>chrUn_1935
CCT-----------------------------------------------------------------------------
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---------------------------TAGCGGGCGCTCGCGCAGCAGCCTCGGGTGGGCCGGCCCAGCAAGCACGCTCA
CACCTTCCCTTTCTTCCTTCGATCGCTAGCTCCTTCGTGCATGTTCATTCG---------TTTTGCTGTTCGGCCCTTTC
GTTCACAAAAACTGAAAACCACATGGATCTGAAAATTACGAATTTGAAAAACAGTTCATGAATTTGAAAAAGTTCATCAA
TTTTGAAAGCAAAAATT-GAAAAAAGTTCACCGAATTTGAA---------------------------------------
--AAAGTTCATTGGATTAAAAAAAAGTTCATCAGGTTTGAA--AAATTCATCGATTTAAAAAAAAAGCGTGCTGAATTTG
AAAGAGCGTTCGCCAAATTTGAAAAAAAACATCAAATTTGAGAAAAAGTTCACTGAATTTGAAAAAATTTCATCGACTTT
GAA-AAAAGTTCGTCGATTTCGCAAAAACGTTCATCAAATTTGAAAAAAAAACTCATCAATTTTGCAAAATATTTGT-CG
CCTTTGAAAAGGTTCACGCATTTATGGGAAAAGGAAACAAAACAAGATAGGAAAAAAGGAAAGAAAACAGAAAAACAGC-
TGGCTTTCTC-------
>chr1A_1939
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----------------------------AGCGGGCGCTCGCGAAGTAGCCGCAGGTGGGCCGGCCCAGCAAGCACGCTCA
CACCTTCCCTTTGTTCCTTCGATCGCTAGCTCCTTCGTGCATGTTTCGTTCGTTTTTTCATTTTTCTGTTCGGCCCTTTC
GTTCACAAAAACTGAAAACCACATGGATCTGAAAATTATGAATTTGAAAAACAGTTCACGAATTTGAAAAGGTTCATCAA
TTTTGGAAGCAAAAATT-G-AAAAAGTTCACCGAATTTGAA---------------------------------------
--AAAGTTCATCCAATTTAAAAAAAGTTCATCAGATTTGAA--AAAGTTCATCAACTTTGAATTTTTT-TGCTGAATTTG
AAAAAGTGTTTGCCGAATTTGAAAAAACA---------------------------------------TTCATCAAATTT
GAA-AAAAGTTCAGCGATTTCGCGAATAAGTTCATCAAATTTGAAAAAAAAT-TCATCAATTTTGCAAAAAAATTGT-CG
CCTTTGAAAAGGTTCACGCATTTATGGGAAAAGG-AAAAAAACAAGGTAGAAAAAAAGGAAA------------------
-----------------
>SNPs
----S--S--------S----SSSSSS-S------------S---------------S----------------------
S------S------------------------------------S--S-----S------------------------SS
----S----------S----------S---SSSSSSS-----S-------------------S-----S----------S
-----------------S-------------S------S-------S---S----------S------------------
-------S-------S---------------------------S--------------------------------S---
---------------------------------------------S----------------------------SSS---
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--------------------------------------------------S-----------------------------
-------------------------S-------------------S----------------------------------
----------------------------------S-----------------------------S---------------
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---------------------------------------------------------S----------------------
-------------S--------------------------------------------S--------------------S
---------------------S--------------------------------------------------------S-
---------------------------S----------------------S---------S-------------------
-------------S------------------------------------------------------------------
----------------------------------------------S------S--S-----------------------
-------------------------------------------------S--------------------------S---
-------------------------------------------------------------S-----------S-SSSS-
----------------------------------------------------------------------------S---
------------------S---S------------S--------------S------SS---------------------
--------------------------------S------------------S-------S-S----S--S----------
-S-----------------------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------S-----------------
--------S-----------S---------------S----S---------------SS-------------S-------
--------------------------------------SS----------S-----------------------------
---------------SSS------------S--S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS--------S------S---------------SS------SS------------SS---SS------------------
-------------------------------------------------------------------S------------
---S----------------SS----------------------S-----S--S----------------SS---SSS--
----------S---------------S------------------------------S-----------------SSSSS
----------SSSSSSS
>forward_302
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------------------------------------------ACCATGGGGAGAAGAGGACA------------------
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>reverse_1915
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--------------------------------------------------------------------------CCTCTT
CTTCGGCGCCTTAA------------------------------------------------------------------
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