>input_sequence_78394
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----------------------------------------------------------------ATGGCTACCCGCCTCC
TCCACCTGCGCCGCCTCCTCCCGGCCGCGCGCCCGTCCTGCGCCGCCGCGTTCTCCACCGCCGTCACCCCGACCCCGCGG
GTCTCAGGCCTCGTGGACGAGATCTGCGGCCTCAACCTCATCGAGGCTTCCTCCCTCGCCGATGCCCTGCGCGGCCGCCT
CGGCGTCGACCAGCTCCCTCCCCTAGCCATCCTCATGGGCGGCGCAGCCCCGCTGGCCGGAGACGGCGCCGGGGCCGCCG
AGGAGGCGAAGCCCAAGGAGGAAAAAATGGCGTTCGACGTGAAGCTGGAGGGGTTCGACGCCGCGGCGAAGCTTAAGATT
ATCAAGGAGCTGAGGGCGATCACGAGTTTGGGCCTGAAGGAGGCCAAGGAGCTCGTGGAGAAGGCGCCGGCCGTGCTCAA
GGCCGGGGTGCCCAAGGAGGAAGCGGAGAGCATCGCCGAGAAGATGCGGGCACTGGGCGCCAAGATTGTTCTCGAGTGA-
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>chr4D_1_TraesCS4D01G063700
TAGTCGCATGCCGATGCAATCGCAAATATGGACCATTGACCCTTTCATATCTTGCATCGATTGTAAAGTGAACGCATGCA
TGCAGGACTATAGTGAAACTACCCTGGACATGTGGCGACAACGTCGAACAAGTGTAGCGGAAAAGAAACATGATTGACCT
AAACAGTAAATGGTTCCTTTGTCTTTTGATGATGGTTTATGCCTGCTGGATTTTAGCTTCCTGCCTATGGCCCCGACCTT
GGGAGATTGGAGATTGGGGCTTGACTTTCACGTGATTAGGGGGTGATCCGTGGCGAAGCTAATCATTTGGTGATGATGCA
TACACATGGCTGCCTAATCGCTATCAAGGGGAAACATTTCGTTGGGGGTGAGGGGTCTCACCCCCACTCGCCCCTCTTGG
ATCCGTCCCTGCCCTTGAAGAATCCCATAATTAGCTAGGTAACAAACTATCTTGTTTC-TTTTTTTGACAATAATATGAC
TTTATTCATCAAAGGACCGGAAGATCGTTTACAATCATGGATGAAATAAAG-TCGGGGATGGAATCATCCCAAAACGACG
AAGACCTAGTATTAAAGGCAGACTTGGCTAAACAA----CCACTTCATTTGCCTCTCTAAAGCAACACTGAAGATCA---
ACATTACCAACACTGCTAACAAGTTTTTGTCACAAAC--------------------------AAAGGTTTTACCTCACG
TTTCAAAAGAAGTTCAAGACATCTTTGAATCAGCTATCTAGATTTATTGACGTACGCCGTTTTCTTTAA-GACCGTGGTA
TACAAATCAATTGTCTTCTTCCGATAAATCGCAAAACCAATTGTCTATCTTCAGATATAAA-------------------
-------------------------------------------------CGCAAAAGAATTGTCCTCCGATAATTATCAG
TCAGATACGCCTTCTCGTTTTATTTACGTAGAGACGTGAATACGTATTCAGTTCATAACATGTGCTGTATCATCTTCCTT
CTCCCCCACTCCGCATCGTCAGTCCCCTGATCCCCTCTGTTTCTGCTGACCCACCAAAACCCTAATGGCTACCCGCCTCC
TCCACCTGCGCCGCCTCCTCCCGGCCGCGCGCCCGTCCTGCGCCGCCGCGTTCTCCACCGCCGTCACCCCGACCCCGCGG
GTCTCAGGCCTCGTGGACGAGATCTGCGGCCTCAACCTCATCGAGGCTTCCTCCCTCGCCGATGCCCTGCGCGGCCGCCT
CGGCGTCGACCAGCTCCCTCCCCTAGCCATCCTCATGGGCGGCGCAGCCCCGCTGGCCGGAGACGGCGCCGGGGCCGCCG
AGGAGGCGAAGCCCAAGGAGGAAAAAATGGCGTTCGACGTGAAGCTGGAGGGGTTCGACGCCGCGGCGAAGCTTAAGATT
ATCAAGGAGCTGAGGGCGATCACGAGTTTGGGCCTGAAGGAGGCCAAGGAGCTCGTGGAGAAGGCGCCGGCCGTGCTCAA
GGCCGGGGTGCCCAAGGAGGAAGCGGAGAGCATCGCCGAGAAGATGCGGGCACTGGGCGCCAAGATTGTTCTCGAGTGAG
AGGATGAGATCTCTGTATGCCTTTGCTTCTTGATTTCTTCCTGTTTATTGTACGAAGGAATTAGAGAAATTTTGGAACTA
ACGAGTCAATAATTGACGAGACTGACTCTAGATATCCTCTCGTTGATAGTGGAAATGCCAGTTGAGCTTTTGAAAGCATG
GTTATAGAATTACTGATAGAGCTTTTGAGCTTTGTCTTATGACTGTTTGTTTGAGTGTGAGCAAGAGAGAATGCTTTTCT
TAGAACAGAGCAATTAGTTTAAGACTGGATTTCTATCTTATCATTACCAGTAGTGATTTGTTTTTTTCACATGGTATCTA
GGTAATGCATCTTTCATGTA------------------------------------------------------------
---------------------------------------------TCTGTGTTCTGCTGTTGCTAGGTAGTAGGATGTCG
TGAAGTTTGCAGTAACAGGAAGTGAGATTTTAGCGAGGTCTTATTATGTCCGTCAGTGCTTGTTACTAATTCGA------
--ACTAGACCAAAAGCTTTGATCTAGGTGGGAGTAATTAGTTGAAATAGTAATGTG--------CACTTCTATATGTTTT
GCGCTTCTGCAGTATATGGATACATATGAAATTTTTGAGCTGCTGAGAT-GTCCAAGGTACATTTAACTGCAAGCTATTT
ATGTTGTGGTTGAAATGAGACCTTGCTGAAGTACACTTACCGAGGGTGTTGTTGGAGATAACCGCACATGGTATGACTAT
GTGGAAATGGCTGTGCTTATTAGTTGATTATGTTTGTGAAAATTCTGCCCGGTATCCTTTTAGA--TTTTTTAATTTCTA
ACAATTATACTCAGATGGCCTATGTTAATTGGTTTGTGGGGTCAAGGAGAAGTTCCGAAACTATCCCTATTAGTTGAGCG
TTCTGTCAGCTATTTATA-----TAGAGATGCCATGAGTTTTCTGAAGTATACTCATGCTTAGCATAGACACTGGAAACA
TAGAACCACTTCTTTGTATGCTTTGGGTTACTGTAACACCTGTTAGCTTAGCCTTCTCATTCACAGTGACACATAGATTT
GTGAAACT
>chr4B_1
TAGTCGCATGCCGATGCAACCACAAATGTGGACCACTGGCCCTTTCAGATCTTGCATCGATTGTAAAGTGAACGCACACA
CGCAGGACTATAGTGAAACTACCCTGGACATGTGGCGACAACGTCGAACAAGTGTAGCAGAAAAGAAACATGATTGACCT
AAATAGTGAATGGTTCCTTTGTCTTTTGATGATGGTTTATGCCAGCTGGATTTTAGCTTCCTACCTATGGCCCCGACCTT
GGGAAATTGGAGATTGGGGCTTCACTTTCACGTGATTAGGGGGTGATCCGTGGCGAAGCTAATCATTCGGTGATGATGCA
TACACATGGCCGCCTAATCGCTATCAAGGGGAAACATTTCATTGGGGGTGAGGGGTCTCACCCCCACTCGCCCCTCTTGG
ATCCGTCCCTGCCCTTGAAGAATCCCATAATTAGGTAGGTAACAAACTATCTTATTTC-TCTTTTTGGCAATAATATGAC
TTTATTCATCAAAGGACCGGAAGATCGTTTACAATCATGGATGAAATAAAG-TCGGGGATGGAATCATCCCAAAACGACG
AAGACCTAGTATTAAAGGCAGACTTGGCTAAACAA----CCACTTCATTTGCCTCTCTAAAGCAATACTGAAGATCATCA
ACATTACCAAGACTGCTAACAAGTTTTTGTCACAAAC--------------------------AAAGGTTTTACCTCACG
TTTGAAAAGAAGTTCAAGCCATCTTTGAATCAGCTACCTAGCTTTATTGACGTACGGCGTTTTCTTCAAGGACCGTGGTA
TACAAACCAGTTGTCTTCTTCAGATAAATCGCAATACCAATTGTCTTTCTTCAGATATAGTCCTTCTGTACCGAAATACT
TGTAGTTGGGGAAACTATCTACAAGTATTTCGGTACACAGGGAGTAAATAGCAAAAGAACTGTCCTCCGATAATTATCCT
TCACATACGCCCTCTCCCTTTATTTACGTAGAGCTGTGAATACGTATTCAGTTCATAGCATGTGCTGTCTCGTCTTCCTT
CTCCGCCACTCCGCATCGTCAGTCCCCTGATCCCCTCTGTTTCTGCTGACCCACCAAAACCCTAATGGCTTCCCGCCTCC
TCCACCTGCGCCGCCTCCTCCCGGCCGCGCGCCCGTCCTGCGCCGCCGCGTTCTCCACCGCCGTCACCCCGACCCCGCGG
GTCTCCGGTCTCGTCGACGAGATCTGCGGCCTCAACCTCATCGAGGCATCCTCCCTCGCGGATGCCCTGCGCGGCCGCCT
CGGCGTCGACCAGCTCCCTCCCCTAGCCATCCTCATGGGTGGCGCGGCTCCGCTGGCCGGAGATGGCGCTGGGGCCGCCG
AGGAGGCGAAACCCAAGGAGGAAAAAATGGCGTTCGACGTGAAGCTGGAGGGGTTCGACGCCGCGGCGAAGCTCAAGATT
ATCAAGGAGCTGAGGGCGATCACGAGTTTGGGCCTGAAGGAGGCCAAGGAGCTCGTGGAGAAGGCGCCCGCCGTGCTCAA
GGCCGGGGTGCCCAAGGAGGAGGCGGAGACCATCGCCGAGAAGATGCGGGCGTTGGGCGCCAAGATTGTTCTCGAGTGAG
AGGACGAGATCTCTGTATGCCTTTGCTTCTTGATTTCTTCCTGTTTATTGTACGAAGGAATTAGAGAAATTTTGGAACCA
AGGAGTCAATAATTAACGAGACTGACTCTAGATATCCTCTCGTTGATAGTGGAAATGCCAGTTGAGCTTTTGAGATCATG
GTTATAGAGTTGATGATAGAGC-TTTGAGCTTTGTCTTATGACTGTTTGCTTGAGTGTGAGCAAGGGAGAATGCATTTCT
TAGAACAGAGCAATTAGTTTGAGACTGGATTTCTATCTTATCATTGCCAGTAGTGATTTGTTTTTTGCACAGGGTATCTA
GGTAATGCATCTTTCATGTA------------------------------------------------------------
---------------------------------------------TCTGTGTTCTGCTGTTGCTAGGTAGTAGGATGTTG
TGAAGTTTGCAGTAACAGGAAGTGAGATTTTAGAGAGGTCTTATTATGTCCGTCAGTGCTTGTTACTAATTCGAAGTTTC
GAACTAGACCAAAAGCTTTGATCTAGATGGGAGTAATTAGTTGAAATAGTAATGTG--------GCCTTCTATATGTTTT
GCGCTTCTGCAGTATATGGATACATATGAAATGTTTGAGCTGCTGAGATAGTCCAAGGTACATTTAACTGCAAACTATTT
ATGTTGTGGTTGAAATGAGACCTTGCTGAAGTACACTTACCGAGGGTGTTGTTGGAGATAACCACAGATGGTATGACTAT
GTGGAAATGGCTGTGCTTATTAGTTGATTATGTTTGTGAAAATTCTGCTCGGTATACTCTTAGATTTTTTTTAATTTATA
ATAATTATACTCAGATGGCCTATGTTAATTGGTTTGTGGGGTCAAGCAGAAGTT-------TATCCCTATTAGTTGAGCG
TTCTGTCAGCTATTTATA-----TAGAGATGCCATGAGTTTTCTGAAGTATACTCATGCTTAGCATAAACACTGGAAACA
GAGAACCACTTCTCTCTATGCTTTGGGTTACTGTAACACCTGTTAGCTTAGCCTTCTCATTCA--GTGACACATAGATTT
GTGAAACT
>chr4A_14
-------------ATGCAACCGCAAATATGGATCATTGACCCATTCAGATCTTGCATCGATTGTAAAGTGAACGCACGCA
TGCTGGACTATAGTGAGACTACCCTATACATGCGGCGACAACGTCGAACAAGTGTAGCGGAAAAGAAACATGATTGACCT
AAACAGTGAATGGTTGCTTTGTCTTTTGCTGGTGGTCTACGCGTGCTGGATTTTAGCTTCCTACCTATGGCCCCGACCTT
GG-AGAATGAAGATTGGGGCTTCATTTTCACGTGATTAGGGG-TGATCGGTGACGAAGCTAATCATTCGGTGATGCTGCA
TACGCATGGCCGCCTAATCACTATCAAGGGGAAACATTTCCTTGGGGGTGAGGGGTCTCGCCCCCACTCGCCCCCCTTGG
ATCCGTCCCCGCCTTTGAAGAATCCCATAATTAGCTGGGTAACAAACTATATATTTTTATTTTTTTGACAATAATATGAC
TTTATTCATCAAAGGACCGAAAGATCGTTTACAATCATGGATGAAATAAAAATCAAGGATGAGATCATTCCAAAATGACA
AAGATCTAGTAGTAAAGCCAGACTTAGCTAAACAATCCACCACTTCATTTTGCCTCTCAGCAATGATGAAA-----ATCA
ATACTACCAAAACTACTAACAAGTTTTTGCCACAAACCATATTTTTGTTAATCAATGGAACATAATGTTTTCGCCTCACA
TTTCGAAAGAAGTGCA----ATCTTTGAATCAGCTACCTAGCTTTATTGACGTATGCCGTTTTCTTTAAGGACCGTGGTA
TACAAACCAATTGTCTTCTTCAGATAAATCGCAAAACCAATTGTCTTTCTTCAGATA-----------------------
-----------------------------------------GAGTAAACCGCAAAAGAATTGCCCTC-GATAATCATCAT
TCAGACACGCCTTCTCGTTTTATTTACGTAGTTCTGTAAATACGTATTCAGTTCATAACATGTGTTGTCTCGTCTTCCTT
CTCCCCCACTCCGCATCGTCAGTCCCCTGATCCCCTCTGTTTCTGCTGACCCACCAAAACCCTAATGGCTTCCCGCCTCC
TCCACCTGCGCCGCCTCCTCCCGGCCGCGCGCCCGTCATGCGCCGCCGCGTTCTCCACCGCCGTCACCCCGACCCCGCAG
GTCTCCGGTCTCGTCGACGAGATCTGCGGCCTCAACCTCATCGAGGCCTCCTCCCTCGCCGATGCGCTGCGCGGCCGCCT
CGGCGTCGACCAGCTCCCTCCCCTAGCCATCCTCATGGGCGGCGCAGCCCCGCTGGCCGGAGATGCTGCCGGGGCCGGCG
AGGAGGCGAAACCCAAGGAGGAAAAAATGGCGTTCGACGTGAAGCTGGAGGGGTTCGACGCCGCGGCGAAGCTCAAGATT
ATCAAGGAGCTGAGGGCGATCACGAGTTTGGGCCTGAAGGAGGCCAAGGAGCTCGTGGAGAAGGCGCCGGCCGTGCTCAA
GGCCGGGGTTCCCAAGGAGGAGGCGGAGAGCATCGCCGAGAAGATGCGGGCACTGGGCGCCAAGATTGTTCTCGAGTGAG
AGGACGAGATCTCTGTATGCCTTTGCTTCTTGATTTCTTCCTGTTTATTGTACGAAGGAATTAGAGAAATTTTGGTACTA
AGGAGTCAATAATTGACGAGACTGACTCTAGATATCCTCTCGTTGATAGTGGAAATGGCAGTTGAGCTTTTGAAAGCATG
GTTATAGAATTAACGATAGAGC-TTTGAGCTTTGTCTTATGACTGTTTGTTTGAGTGTGAGCAAGGGAGAATGCATTTCT
TAGAATAGAGCAATTAGTTTATGACTGGATTTCTGTCATACCATTTCCAGTAGTGATTTGTTTTTTGCACAGGGTATCTA
GGTAATGCATCTTTCATGTACTCCCTCCTTTCTATTTTATAAGACGTTTTGTACAGCTGACATTGAACTGTTTTGTGCTC
TGTCTGAATTGCCTAAACGTCTTATAAAAGAGAACAGAGGGAGTATCGGTGTTCTGCTGTTGCTAGGTAGTACAATGTTG
TGAAATTTGCAGTAACAGGAAGTGAGATTTTGGAGAGGTCTTATTATGTCCTTCAGTGCTTGTTACTAATTCGA------
--ACTAGACCAAAAGCTTCGATCTAGATGGTAGTAATTAGTTGAAATGGTAATGTGCGGTTGTGCACTTCTCTATGTTTT
GCGCTTCTGCAGTATATGGATACATATGAAATGTTTAAGCTGCTGACATAGTCCAAGGTACATTTAACTGCAAACTATTT
ATGTTGTGGTTGAAATGAGACCTTGCTGAAGTACACTTACCGAGGGTGTTGTTGGAGATCACGACAAATGATATGACTAT
GTGGAAATGACTATGCTTATTAGTTGATTACGTTTATGAAAACTCTGTATAGTATACTTTTAGATTTTTTT-AATTTCTA
ATAATTATTCTTAGATGGCCTATGTTAATTGGCTTGTGGGGTTGAGCAGAAGTTCCGAAACTATCCC---------AGCG
TTCTGTCAGCTATTTATAATATATAGAGATGGCATGAGTTTTCTGAAGTATACTCACGCTTAGGATAGACACTGGAAACA
GAGAACCATTTCTTTGTATGCTTTGGGCTATTGTAGCATCTGTTAGCTTGGCCTTCTCATTCACAGT-------------
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>SNPs
-------------------S---------------------------S----------------------------S---
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-------S------------------------------------------------------S-----------------
----------------------S--------------------------------------------S------------
----------S-----------------------------S---------------------------------------
-----------------------------------------------------S--------------------------
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-----------------------------------------------------------------S--------------
----------S---------------------------------------------------------------------
------------------S-----------------S----S--------------------------------------
------S--------------S------------------------S------------SS-------------------
-------------------------------------------------------------------------------S
---------------------------------SS---------------------------------S--S--------
----------------------------------------------------------------------S---------
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-----S--S-----S--------------------------------S--------------------------------
---------------------------------------------------------------S----------------
----------S--------------------------------------------------------------S------
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---------------------S----------------------------------------------------------
----S---------------------------------------------------------------------------
-S------------------------------------------------------------------------------
------------S---------S------------------------------------------S--------S-----
---------------------------------------------S--------------------S----S--------
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------------------------------------------------------------------------------S-
---------------------------------S----------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------S----------------------------------------S------
---------------------------------------------------------------S--S-------------
------------------------------------------------S------S------------------------
-S--------------------------------------------S---------------------------------
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S-------------------------------------------------------------------------------
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>forward_263
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--GAGATTGGAGATTGGGGCTTG---------------------------------------------------------
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>reverse_2273
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--------------------------------TTTTGAGCTGCTGAGATGTCCA--------------------------
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