>input_sequence_78391
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----------------------------------------------------------------------------ATGG
CTTCCCGCCTCCTCCACCTGCGCCGCCTCCTCCCGGCCGCGCGCCCGTCCTGCGCCGCCGCGTTCTCCACCGCCGTCACC
CCGACCCCGCGGGTCTCCGGTCTCGTCGACGAGATCTGCGGCCTCAACCTCATCGAGGCATCCTCCCTCGCGGATGCCCT
GCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCCCTAGCCATCCTCATGGGTGGCGCGGCTCCGCTGGCCGGAGATGGCG
CTGGGGCCGCCGAGGAGGCGAAACCCAAGGAGGAAAAAATGGCGTTCGACGTGAAGCTGGAGGGGTTCGACGCCGCGGCG
AAGCTCAAGATTATCAAGGAGCTGAGGGCGATCACGAGTTTGGGCCTGAAGGAGGCCAAGGAGCTCGTGGAGAAGGCGCC
CGCCGTGCTCAAGGCCGGGGTGCCCAAGGAGGAGGCGGAGACCATCGCCGAGAAGATGCGGGCGTTGGGCGCCAAGATTG
TTCTCGAGTGA---------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G064700
CGCACACACGCAGGACTATAGTGAAACTACCCTGGACATGTGGCGACAACGTCGAACAAGTGTAGCAGAAAAGAAACATG
ATTGACCTAAATAGTGAATGGTTCCTTTGTCTTTTGATGATGGTTTATGCCAGCTGGATTTTAGCTTCCTACCTATGGCC
CCGACCTTGGGAAATTGGAGATTGGGGCTTCACTTTCACGTGATTAGGGGGTGATCCGTGGCGAAGCTAATCATTCGGTG
ATGATGCATACACATGGCCGCCTAATCGCTATCAAGGGGAAACATTTCATTGGGGGTGAGGGGTCTCACCCCCACTCGCC
CCTCTTGGATCCGTCCCTGCCCTTGAAGAATCCCATAATTAGGTAGGTAACAAACTATCTTATTTC-TCTTTTTGGCAAT
AATATGACTTTATTCATCAAAGGACCGGAAGATCGTTTACAATCATGGATGAAATAAAG-TCGGGGATGGAATCATCCCA
AAACGACGAAGACCTAGTATTAAAGGCAGACTTGGCTAAACAA----CCACTTCATTTGCCTCTCTAAAGCAATACTGAA
GATCATCAACATTACCAAGACTGCTAACAAGTTTTTGTCACAAAC--------------------------AAAGGTTTT
ACCTCACGTTTGAAAAGAAGTTCAAGCCATCTTTGAATCAGCTACCTAGCTTTATTGACGTACGGCGTTTTCTTCAAGGA
CCGTGGTATACAAACCAGTTGTCTTCTTCAGATAAATCGCAATACCAATTGTCTTTCTTCAGATAT----AGTCCTTCTG
TACCGAAATACTTGTAGTTGGGGAAACTATCTACAAGTATTTCGGTACACAGGGAGTAAATAGCAAAAGAACTGTCCTCC
GATAATTATCCTTCACATACGCCCTCTCCCTTTATTTACGTAGAGCTGTGAATACGTATTCAGTTCATAGCATGTGCTGT
CTCGTCTTCCTTCTCCGCCACTCCGCATCGTCAGTCCCCTGATCCCCTCTGTTTCTGCTGACCCACCAAAACCCTAATGG
CTTCCCGCCTCCTCCACCTGCGCCGCCTCCTCCCGGCCGCGCGCCCGTCCTGCGCCGCCGCGTTCTCCACCGCCGTCACC
CCGACCCCGCGGGTCTCCGGTCTCGTCGACGAGATCTGCGGCCTCAACCTCATCGAGGCATCCTCCCTCGCGGATGCCCT
GCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCCCTAGCCATCCTCATGGGTGGCGCGGCTCCGCTGGCCGGAGATGGCG
CTGGGGCCGCCGAGGAGGCGAAACCCAAGGAGGAAAAAATGGCGTTCGACGTGAAGCTGGAGGGGTTCGACGCCGCGGCG
AAGCTCAAGATTATCAAGGAGCTGAGGGCGATCACGAGTTTGGGCCTGAAGGAGGCCAAGGAGCTCGTGGAGAAGGCGCC
CGCCGTGCTCAAGGCCGGGGTGCCCAAGGAGGAGGCGGAGACCATCGCCGAGAAGATGCGGGCGTTGGGCGCCAAGATTG
TTCTCGAGTGAGAGGACGAGATCTCTGTATGCCTTTGCTTCTTGATTTCTTCCTGTTTATTGTACGAAGGAATTAGAGAA
ATTTTGGAACCAAGGAGTCAATAATTAACGAGACTGACTCTAGATATCCTCTCGTTGATAGTGGAAATGCCAGTTGAGCT
TTTGAGATCATGGTTATAGAGTTGATGATAGAGC-TTTGAGCTTTGTCTTATGACTGTTTGCTTGAGTGTGAGCAAGGGA
GAATGCATTTCTTAGAACAGAGCAATTAGTTTGAGACTGGATTTCTATCTTATCATTGCCAGTAGTGATTTGTTTTTTGC
ACAGGGTATCTAGGTAATGCATCTTTCATGT-------------------------------------------------
--------------------------------------------------------ATCTGTGTTCTGCTGTTGCTAGGT
AGTAGGATGTTGTGAAGTTTGCAGTAACAGGAAGTGAGATTTTAGAGAGGTCTTATTATGTCCGTCAGTGCTTGTTACTA
ATTCGAAGTTTCGAACTAGACCAAAAGCTTTGATCTAGATGGGAGTAATTAGTTGAAATAGTAAT--------GTGGCCT
TCTATATGTTTTGCGCTTCTGCAGTATATGGATACATATGAAATGTTTGAGCTGCTGAGATAGTCCAAGGTACATTTAAC
TGCAAACTATTTATGTTGTGGTTGAAATGAGACCTTGCTGAAGTACACTTACCGAGGGTGTTGTTGGAGATAACCACAGA
TGGTATGACTATGTGGAAATGGCTGTGCTTATTAGTTGATTATGTTTGTGAAAATTCTGCTCGGTATACTCTTAGATTTT
TTTTAATTTATAATAATTATACTCAGATGGCCTATGTTAATTGGTTTGTGGGGTCAAGCAGAAGTT-------TATCCCT
ATTAGTTGAGCGTTCTGTCAGCTATTTATA-----TAGAGATGCCATGAGTTTTCTGAAGTATACTCATGCTTAGCATAA
ACACTGGAAACAGAGAACCACTTCTCTCTATGCTTTGGGTTACTGTAACACCTGTTAGCTTAGCCTTCTCATTCA--GTG
ACACATAGATTTGTGAAAC
>chr4D_1
CGCATGCATGCAGGACTATAGTGAAACTACCCTGGACATGTGGCGACAACGTCGAACAAGTGTAGCGGAAAAGAAACATG
ATTGACCTAAACAGTAAATGGTTCCTTTGTCTTTTGATGATGGTTTATGCCTGCTGGATTTTAGCTTCCTGCCTATGGCC
CCGACCTTGGGAGATTGGAGATTGGGGCTTGACTTTCACGTGATTAGGGGGTGATCCGTGGCGAAGCTAATCATTTGGTG
ATGATGCATACACATGGCTGCCTAATCGCTATCAAGGGGAAACATTTCGTTGGGGGTGAGGGGTCTCACCCCCACTCGCC
CCTCTTGGATCCGTCCCTGCCCTTGAAGAATCCCATAATTAGCTAGGTAACAAACTATCTTGTTTC-TTTTTTTGACAAT
AATATGACTTTATTCATCAAAGGACCGGAAGATCGTTTACAATCATGGATGAAATAAAG-TCGGGGATGGAATCATCCCA
AAACGACGAAGACCTAGTATTAAAGGCAGACTTGGCTAAACAA----CCACTTCATTTGCCTCTCTAAAGCAACACTGAA
GATCA---ACATTACCAACACTGCTAACAAGTTTTTGTCACAAAC--------------------------AAAGGTTTT
ACCTCACGTTTCAAAAGAAGTTCAAGACATCTTTGAATCAGCTATCTAGATTTATTGACGTACGCCGTTTTCTTTAA-GA
CCGTGGTATACAAATCAATTGTCTTCTTCCGATAAATCGCAAAACCAATTGTCTATCTTCAGATAT----AAAC------
--------------------------------------------------------------GCAAAAGAATTGTCCTCC
GATAATTATCAGTCAGATACGCCTTCTCGTTTTATTTACGTAGAGACGTGAATACGTATTCAGTTCATAACATGTGCTGT
ATCATCTTCCTTCTCCCCCACTCCGCATCGTCAGTCCCCTGATCCCCTCTGTTTCTGCTGACCCACCAAAACCCTAATGG
CTACCCGCCTCCTCCACCTGCGCCGCCTCCTCCCGGCCGCGCGCCCGTCCTGCGCCGCCGCGTTCTCCACCGCCGTCACC
CCGACCCCGCGGGTCTCAGGCCTCGTGGACGAGATCTGCGGCCTCAACCTCATCGAGGCTTCCTCCCTCGCCGATGCCCT
GCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCCCTAGCCATCCTCATGGGCGGCGCAGCCCCGCTGGCCGGAGACGGCG
CCGGGGCCGCCGAGGAGGCGAAGCCCAAGGAGGAAAAAATGGCGTTCGACGTGAAGCTGGAGGGGTTCGACGCCGCGGCG
AAGCTTAAGATTATCAAGGAGCTGAGGGCGATCACGAGTTTGGGCCTGAAGGAGGCCAAGGAGCTCGTGGAGAAGGCGCC
GGCCGTGCTCAAGGCCGGGGTGCCCAAGGAGGAAGCGGAGAGCATCGCCGAGAAGATGCGGGCACTGGGCGCCAAGATTG
TTCTCGAGTGAGAGGATGAGATCTCTGTATGCCTTTGCTTCTTGATTTCTTCCTGTTTATTGTACGAAGGAATTAGAGAA
ATTTTGGAACTAACGAGTCAATAATTGACGAGACTGACTCTAGATATCCTCTCGTTGATAGTGGAAATGCCAGTTGAGCT
TTTGAAAGCATGGTTATAGAATTACTGATAGAGCTTTTGAGCTTTGTCTTATGACTGTTTGTTTGAGTGTGAGCAAGAGA
GAATGCTTTTCTTAGAACAGAGCAATTAGTTTAAGACTGGATTTCTATCTTATCATTACCAGTAGTGATTTGTTTTTTTC
ACATGGTATCTAGGTAATGCATCTTTCATGT-------------------------------------------------
--------------------------------------------------------ATCTGTGTTCTGCTGTTGCTAGGT
AGTAGGATGTCGTGAAGTTTGCAGTAACAGGAAGTGAGATTTTAGCGAGGTCTTATTATGTCCGTCAGTGCTTGTTACTA
ATTCGA--------ACTAGACCAAAAGCTTTGATCTAGGTGGGAGTAATTAGTTGAAATAGTAAT--------GTGCACT
TCTATATGTTTTGCGCTTCTGCAGTATATGGATACATATGAAATTTTTGAGCTGCTGAGAT-GTCCAAGGTACATTTAAC
TGCAAGCTATTTATGTTGTGGTTGAAATGAGACCTTGCTGAAGTACACTTACCGAGGGTGTTGTTGGAGATAACCGCACA
TGGTATGACTATGTGGAAATGGCTGTGCTTATTAGTTGATTATGTTTGTGAAAATTCTGCCCGGTATCCTTTTAGA--TT
TTTTAATTTCTAACAATTATACTCAGATGGCCTATGTTAATTGGTTTGTGGGGTCAAGGAGAAGTTCCGAAACTATCCCT
ATTAGTTGAGCGTTCTGTCAGCTATTTATA-----TAGAGATGCCATGAGTTTTCTGAAGTATACTCATGCTTAGCATAG
ACACTGGAAACATAGAACCACTTCTTTGTATGCTTTGGGTTACTGTAACACCTGTTAGCTTAGCCTTCTCATTCACAGTG
ACACATAGATTTGTGAAAC
>chr4A_1
CGCACGCATGCTGGACTATAGTGAGACTACCCTATACATGCGGCGACAACGTCGAACAAGTGTAGCGGAAAAGAAACATG
ATTGACCTAAACAGTGAATGGTTGCTTTGTCTTTTGCTGGTGGTCTACGCGTGCTGGATTTTAGCTTCCTACCTATGGCC
CCGACCTTGG-AGAATGAAGATTGGGGCTTCATTTTCACGTGATTAGGGG-TGATCGGTGACGAAGCTAATCATTCGGTG
ATGCTGCATACGCATGGCCGCCTAATCACTATCAAGGGGAAACATTTCCTTGGGGGTGAGGGGTCTCGCCCCCACTCGCC
CCCCTTGGATCCGTCCCCGCCTTTGAAGAATCCCATAATTAGCTGGGTAACAAACTATATATTTTTATTTTTTTGACAAT
AATATGACTTTATTCATCAAAGGACCGAAAGATCGTTTACAATCATGGATGAAATAAAAATCAAGGATGAGATCATTCCA
AAATGACAAAGATCTAGTAGTAAAGCCAGACTTAGCTAAACAATCCACCACTTCATTTTGCCTCTC--AGCAATGATGAA
AATCA---ATACTACCAAAACTACTAACAAGTTTTTGCCACAAACCATATTTTTGTTAATCAATGGAACATAATGTTTTC
GCCTCACATTTCGAAAGAAGTGCA----ATCTTTGAATCAGCTACCTAGCTTTATTGACGTATGCCGTTTTCTTTAAGGA
CCGTGGTATACAAACCAATTGTCTTCTTCAGATAAATCGCAAAACCAATTGTCTTTCTTCAGATAGAGTAAACC------
--------------------------------------------------------------GCAAAAGAATTGCCCTC-
GATAATCATCATTCAGACACGCCTTCTCGTTTTATTTACGTAGTTCTGTAAATACGTATTCAGTTCATAACATGTGTTGT
CTCGTCTTCCTTCTCCCCCACTCCGCATCGTCAGTCCCCTGATCCCCTCTGTTTCTGCTGACCCACCAAAACCCTAATGG
CTTCCCGCCTCCTCCACCTGCGCCGCCTCCTCCCGGCCGCGCGCCCGTCATGCGCCGCCGCGTTCTCCACCGCCGTCACC
CCGACCCCGCAGGTCTCCGGTCTCGTCGACGAGATCTGCGGCCTCAACCTCATCGAGGCCTCCTCCCTCGCCGATGCGCT
GCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCCCTAGCCATCCTCATGGGCGGCGCAGCCCCGCTGGCCGGAGATGCTG
CCGGGGCCGGCGAGGAGGCGAAACCCAAGGAGGAAAAAATGGCGTTCGACGTGAAGCTGGAGGGGTTCGACGCCGCGGCG
AAGCTCAAGATTATCAAGGAGCTGAGGGCGATCACGAGTTTGGGCCTGAAGGAGGCCAAGGAGCTCGTGGAGAAGGCGCC
GGCCGTGCTCAAGGCCGGGGTTCCCAAGGAGGAGGCGGAGAGCATCGCCGAGAAGATGCGGGCACTGGGCGCCAAGATTG
TTCTCGAGTGAGAGGACGAGATCTCTGTATGCCTTTGCTTCTTGATTTCTTCCTGTTTATTGTACGAAGGAATTAGAGAA
ATTTTGGTACTAAGGAGTCAATAATTGACGAGACTGACTCTAGATATCCTCTCGTTGATAGTGGAAATGGCAGTTGAGCT
TTTGAAAGCATGGTTATAGAATTAACGATAGAGC-TTTGAGCTTTGTCTTATGACTGTTTGTTTGAGTGTGAGCAAGGGA
GAATGCATTTCTTAGAATAGAGCAATTAGTTTATGACTGGATTTCTGTCATACCATTTCCAGTAGTGATTTGTTTTTTGC
ACAGGGTATCTAGGTAATGCATCTTTCATGTACTCCCTCCTTTCTATTTTATAAGACGTTTTGTACAGCTGACATTGAAC
TGTTTTGTGCTCTGTCTGAATTGCCTAAACGTCTTATAAAAGAGAACAGAGGGAGTATCGGTGTTCTGCTGTTGCTAGGT
AGTACAATGTTGTGAAATTTGCAGTAACAGGAAGTGAGATTTTGGAGAGGTCTTATTATGTCCTTCAGTGCTTGTTACTA
ATTCGA--------ACTAGACCAAAAGCTTCGATCTAGATGGTAGTAATTAGTTGAAATGGTAATGTGCGGTTGTGCACT
TCTCTATGTTTTGCGCTTCTGCAGTATATGGATACATATGAAATGTTTAAGCTGCTGACATAGTCCAAGGTACATTTAAC
TGCAAACTATTTATGTTGTGGTTGAAATGAGACCTTGCTGAAGTACACTTACCGAGGGTGTTGTTGGAGATCACGACAAA
TGATATGACTATGTGGAAATGACTATGCTTATTAGTTGATTACGTTTATGAAAACTCTGTATAGTATACTTTTAGATTTT
TTT-AATTTCTAATAATTATTCTTAGATGGCCTATGTTAATTGGCTTGTGGGGTTGAGCAGAAGTTCCGAAACTATCCC-
--------AGCGTTCTGTCAGCTATTTATAATATATAGAGATGGCATGAGTTTTCTGAAGTATACTCACGCTTAGGATAG
ACACTGGAAACAGAGAACCATTTCTTTGTATGCTTTGGGCTATTGTAGCATCTGTTAGCTTGGCCTTCTCATTCA-----
-------------------
>SNPs
-----S--S---------------------------------------------------------S-------------
-----------S---------------------------------------S----------------------------
------------S-------------------------------------------------------------------
------------------------------------------------S-------------------------------
------------------------------------------S------------------S------S------S----
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-----SSS----------S-------------------------------------------------------------
-----------S--------------S-------------------------------------S---------S-----
-----------------S------------------------S----------------------------SS-SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--------
----------S----S-------S----SS---------------------------------------S----------
----------------S---------------------------------------------------------------
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-----------------------------------------------------------S-----------S--------
---------------------------------------------------S-----S--S-------------------
-S------------------------------------------------------------------------------
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S----------------------------------------S---------------------SS---------------
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----------S---------------S-----------------------------------------------------
-----S-S------------S--S-------------------------------------S------------------
--------------------------------S------------------------S----------------------
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------SSSSSSSS--------------------------------------------------------------SS--
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------------------------------------------------------------------------------S-
------------------------------------------------------------S---------S---------
---------S----------------------------------------------------------------------
-------------------------------------------------------------------------------S
-------------------------S-S----------------------------------------------------
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>forward_909
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---------CCTTCACATACGCCCTCTCC---------------------------------------------------
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>reverse_1742
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-------------------------------------------------------------CTTGAGTGTGAGCAAGGGA
GA------------------------------------------------------------------------------
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