>input_sequence_78377
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-----------------------ATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGGCGGCGCTGCAGCACCTG
CTGGACATTCCCGACGGCGAGGCCGGCGGGCCCGGCAACGCCGCCGGCGAGAAGCAGGGCCCGACGCCGACGCGTGCCTA
CGTCCGAGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGTGGACA
TGCCGGGGCTGGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTGATCAGCGGCGAGCGGCGGAGG
GAGGAGGAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCCGACAA
CGCCGACATGGAGAAGGTCTCCGCCGTTTGCCGCGACGGCGTGCTCACCGTCTCCGTGCAGAAGCTGCCGCCGCCAGAGC
CCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGA------------------------------------------
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-------------------------------
>chr3A_1_TraesCS3A01G112900
AAGGGGAGTCACACTGTCGAGAAGGTCACCAAAGGTCGCCGTCAAGGACACAACTTCGACCAGAAAGCGGTCGTCGACCA
AGAGCCAGCCATCTTCGTCCAGAAAGCACTCGCCGTCTAAGAACCCGCCGAAGGCCAGGCCGGCAGAGGCCAGAAAGGCC
AAGCCGGTGAGAGCTGGGAGCAGCAAGGGCGGCGAGAAGGCCGGGAAGAGCAGCAGAGCCAGGCCGGAGGGTGGGAAGGG
GGATGCTCTGAATAAGGTGGGAAGTAAGCTGAGCGTGGTTGGGTTCAGAGGGCGCAGCACCGGGAAGTCGGCGCAGGCTT
CATGATGGTCGAT---CTGAGATATTTGATCCTGTAA-CCTGTAAATATCAGTGACTTGGTTTCTGCCATTTTTTGTGCT
TTTCGGCTTACAATTTTGATAAACTTTTTTAAAAGAGAAAGAAACAATTGAGATCTTACCACGGCATCCGGAATAAAAAA
AAATTGTTTGTGCTTTTATTATTTGTATATACACGAAGAGTGTGGAGCATTGTCTTGCC------CTAAATCTTTGTTAC
TACACATCTTCGTTATTTTGAGGTGACTGACATTTATCCGAGTTTGTTCCTGACCATGTTGCGATGCTCCTAGTCCCTGA
ATTCGACACAAACCAGCAGTGATCGCAGATATGCACGGGAGGATTGGAGAAGTTTCTGGAGAACGGATCATCTTTCCAAA
AATAAAAGTGAAAGGAAAA--------------------TGTCTCTGC--------------------------------
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--------------------------------------------------------TCCTAAAGAAAGACCGTGAT----
---------GGAGCTCTGGAACTTTCCGCGTCGCCGCATCCCGCGCGTTCCACCAAGTTTCAGAAGCTTCCGTCACCTTC
CAGAATCCGGACTCCCCGCCCCACGTCAT-----CACCGATATAAACTCCCTCCTCCTCCCGTCCGTCGCATCATCACCA
AGGCATTCCACAAAAAAAAAAAAT-CAGCAGACAATCCAACGC-A-GTCCAATCCGAGGAGA--CCGACCGATCGAGCTC
GGAGGTCAG-CAGCGAG-CGAGAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGGCGGCGCTGCAGCACCTG
CTGGACATTCCCGACGGCGAGGCCGGCGGGCCCGGCAACGCCGCCGGCGAGAAGCAGGGCCCGACGCCGACGCGTGCCTA
CGTCCGAGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGTGGACA
TGCCGGGGCTGGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTGATCAGCGGCGAGCGGCGGAGG
GAGGAGGAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCCGACAA
CGCCGACATGGAGAAGGTCTCCGCCGTTTGCCGCGACGGCGTGCTCACCGTCTCCGTGCAGAAGCTGCCGCCGCCAGAGC
CCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA--------GATGCATGGATGGGACGACCGAACCAGAGAGA
-GGTCCTTTGCCTGCACGCCGGATCGAAGCTGCCGAGTGGGTAGTGAACTAGTGATCGATGCTTAGGGAGTGAGTTTCCT
GAGATGCGTGATGTGTCTTGTGTGTTTTCTATCTCTGCTCGTATGGTGTTCGAGAGTGTTGTGTGACTAGTTTTCGCTTT
CAGTGCACAATTTCAATGAAATTTCTGAAATATCATCAACTTTGT---------------------TTCAAACTTACCAG
CTCAAAATAAGTGACTCAAGTTTGTACTAACTTGAAGTGTCTCTTTAATCTTGGGGGTGCACACAACTTCAAATAATTCT
AAATCATCTTTTTGTTTTT-TCAAAATATTTGTTTGGATCCCAAAATCAAATTTGAGTGGACA--TAAGTCCCCTGTCTG
AAATGAAAAACAGAGCCACTGGATTTCAATGGAAGTCAGTTAATTCGCCCATGGTTGAAAGGTGTCTGTTTGTGGTGGTT
TTTACTACGTATATAATCAGAATTTTAGAGTAGAAGATAGATTGGTACTCCCTCCGTCTCATACTGTAAAATGTTTTTGA
CACTAGATAATTAAGCATTACGTTTATACATACTCTCTCAGTTTCAGCGTCCAATGTTTTTGACACTAGATAATTAAGCA
TTACGTTTATACATACTCTCTCAGTTTCAGCGTCCCAAAATTCTCTTTGACTATGTTGGGGAATCCAGTAATTTTAAAAA
AAATTTACGCACACACACAAGATCATGGTGATGTGTAGCAACGAGAGGGGAGTGTATCGTCTATATATTCTTGTAGACCG
TAAGCGGAAGCGTTATGACAACGCGTTTGATGTAGTCGTACGTCTTCACGATCGACTGATCCTAGTACCGAATGTACGGC
ACCTCCGCGATCTGCACACATTCAGCTCGATGACGTCCCGCAAACTCACGATCCAGTAGAGCTTCGTGGGAGAGTTTCGT
CAGCACGACGGCGTGATGACGGTGATGATGT
>chr3D_1
AAGGGGAGTCACACTGTCGAGAAGGCCGCCAAAGGTCGCCATCAAGGACACAACTTCGACCAGGAAGCGCTCGTCGACCA
AGAGCCAGCCATCTTCGTCCAGGAAGCACTCGCCGTCTAAGAACCCGCCTAAGGCCAGGCCGGCAGAGGCCAGAAAGGCC
AAGCCGGTGAGAGCTGGTAGCAGCAAGGGTGGCGAGAAGGTCGGGAAGAGCGGCAAGGCCAGGCCGGAGGGCGGGAAGGG
GGATGCTCTGAATAAGGTGGGAAGTAAGCTGAGCGTGGTTGGATTCAGAGGGCGCAGCACCGGGAAATCGGCGCAGGCTT
CATGA--TAATCGCTCCTGAGATATTTGATCCTGTAAACCTGTAAATATCAGTGACTTGGTTTTTGCCATTTTTTGTGCT
TTTTGGCTTACAATTTTGATAATCTTTTTTAAAAGAGAAAGGAACATTTGAGATCTTACCACGGCATCTGTAATAATAAA
AAAATGTTTGTGCTTTTATTATTTGTACTT----GAAGAGTGTGGAG--TTGTCTTGCCCAGATGCTAAATCTTTGTTAC
TACACATCTTTGTTATTTGGAGGTGACTGACATTTATCCCAGTTTGTTCCTCACCATGTTGCGGTGCTCCTAGTCCCCGA
ATTCGACACAAACCAGCAGTGATCGCAGATATGCGCGGGAGGATTGGAGAAGTTTCTGGAGA------------TCCAAA
AATAAAAGTGAAAGGAAAAGCGCAGAGCTTAAAAA----TATCTCTGCTCCTATCCGCTCCAGAAGCGAGACACTTGTCA
CGACAGGTC-----------------------------------------------------------------------
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------------ACAGACCTGGCCACTCA----------TCAACATTTTCA--TTTTCCTAAAGAAAGACCGTTGATGGA
G------------CTCTGGAACTTTCCGCGGTGCCGCATCCGGCGGGTTCCACCACGTTTCAGAAGCTTCCGTCACCTTC
CAGAATCCAGACTCCCCGCCTC--------CGGCCACCGATATAAACTCCCTCCTCCTC----CCGTCGCATCATCACCG
AAGCATTCCACAAAA--------T-CAGCAAACAATCCAACGC-A-GTCCAGCCGGAGGAGA--CCGATCGATCGAGCTC
GGAGATCAG-CAGCGAG-CGAGAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGCACCTG
CTGGACGTCCCAGACGGCGAGTCCGGCGGAGCCGGTGCCACCGGCGGTGAGAAGCAGGGCCCGACGC------GCGCCTA
CGTCCGCGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGTGGACG
TGCCGGGGCTGGGCTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTCATCAGCGGCGAGCGCCGGAGG
GAGGAGAAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTGCCCGAGAA
CGCCGACACGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCTCCGTCCAGAAGCTGCCGCCGCCCGAGC
CCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA--------G----ATGGATGGGACAACCGAACCAGAGAGA
AGGTCCTTTGCCTGG-CGCCTGATCGGAGCTGAGTGGG-----------TAGTGATCGATGATTAGGGAGTGAGTTTCCT
GAGATGCGTGATGTGTC---TGTGATTTCTATCTCTGCTCGCATGGTGTCCGAGGGTGTTGTGTGGCTAGTTTTCTCTTT
CAGTGCGCAATTTCAATGAAATTTCGGAAATATCATCAATTTTGG---------------------TTCTTCCA------
----------------------------------AAATATTTCAGTAATCTTGGTGGCGCACACAACTTCAAATAATTCT
AAATCATCTTTTTGTTTTTCTCAAAATATTTGTTTGGGTCCCAAAATCAAATATTAGTGGACATTTAAGTCCCCTGGCTG
AAATGAAAAACAGAGTCACTGGATTTCAATGGAAGTCAGTTAATTCGCCCATG---------------------------
--------------------------------------------------------------------------------
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-------------------------------
>chr3B_1
AAGGGGAGTCACACTGTCGAGAAGGCCGCCAAAGGTCGCCATCAAGGACACAACTTCAACCAGAAAGCGGTCGTCGACCA
AGAGCCAGCCATCTTCGTCCAGGAAGCACTCACCGTCTAAGAACCCGCCGAAGGCCAGGCCGGCAGAGGCCAGAAAGGCC
AAGCCGGTGAGGGCTGGTAGCAGCAAGGGCGGCGAGAAGGTCGGGAAGAGCAGCAGAACCAGGCCGGAAGGCGGGAAGGG
GGATGCTCTGAATAAGGTGGGAAGTAAGTTGAGCGTGGTTGGATTCAGAGGGCGCAGCACCGCGAAGTCGGCGCAGGCTT
ACCACGGTAATCGCTCCTGAGATATTTGATCCTGTAA-CCTGTAAATATCAGTGACTTTGTTTTCACCATTTTTTGTGCT
TTTCGGCTTACAATTTTGATAATCTTTTTTAAAAGAGAAAGGAACAATTGAGATCTTACCACGGCATCTATAATAAAATA
ATTTTGTTTGTGCTTTTATTGTTTGTA--TACACGAACAGCGTGGAGCATTGTCTTGCCCAGATGCTAAATCCTTGTCAC
TGCACATCTTTGTTACT-------------------------------------------------CTCACAGCCCCTGA
AATCGCCACAAACCAG-------------TAGGCACCGGAGGATTGTAGAAGTTTCTGGAGAGCGGAT-ATCTTTCCAAA
GGAAAGAGCGAAAGGAAAAGCACAGAGCTTAATAAATACTATCTCTACTCCTATCCGCTCCAGAAGCGAGACACTTGTCA
CGACAGCTTAGGGCATCTCCAGCCGCGCCCCAGGAAGACCTTCCCAGACGTTTTTTTCGCGCCGGCGCTGAAAAAACGGC
CCAGTCGCGCCCCAGGAGCCTGATTTTCGCCGGCTTGGGCCGAAAACAGCGCCGGCGGACCCAGCCCGAACCCGGCGCGC
TGGGGGGCGACCGGGGGCGCCGGGCGAACTGTTTTGGCGCGAAAAAGCCGCGGGCCCCCCGCGTCAGCGACACGGCTCTC
TTCTCGGCCCTTCGTCGTCCTCATCGCCTCGTTTCCCGCAGCGAATCAATGCCAAAGCTGCCGCGCTGCCGCGCCGGTCA
GCCTGCACCATTGATGCCTCATGGGCGGCGCAGTGAAGACCGGACGACGCGCGTCCCTCGCCCTCCCTCGCCCCGCCACG
CGTACACACGGTGACACGCGCGCCTTGGCCTATATATGAAGCGCCCCGACGCACTCGGCGACTCACGCTCTCCCGCCGCC
GTCGTTTCCTCCCTCTCCTCTCCTCTCTTTCGCCATCCCCAGTTCACAGCCATGGCCGAGCGCTTCCCAGACGACGGCGC
GGCGGCGAACGGCTTCGGCCGCCGCCATCTTCACGAAGACGAGGCTCGCCTCCTTTACGAGGCCGAGTACCCGGTCCTGC
CGGACATGCGGGTGCCCGGGACGTGGAGGATCAGCGCGGGCGGCGTACCGGTGCCCCCGGTGCCGACCGACGCGGCACGG
CGTGCGGAGATCGCACGCATCCGCTCGAACCTGCCGCGTGCGGCGAGGTAGGCGCCACGGTACGCCCCCGACAGCCCGCT
CTGGGAACCGTACTTCCGCCGCCGTCAGGCCGAGCAGCTCGAGGCCACCAACGGCGTCGTGCCCTCCGGCAGGCTCAACG
CCACCGGCCGGCGTCTGTGGTGGGGCGTGCCCGGGCGCACGTTGGAGGCTGTCCTCGAGCACATCGAGGGCGGCAACACG
CCACGCCTGGAGTACCCCGCTCCTCCTTCCTTCTCACGCCGCCGGGGAAGCTCATGGACCCCGAGGCGCATGGAGACCGG
AGGGTCCTCTTCCTCGTCCGGCGGCTCGCCCTGCCTCCGCCCTGTCAAGCCGGAGCCCCAGGACACGCCGATCAGCGCGC
GCACCCGCAGCTCCGGCGGCGCCAACGCCTCTCCACCAACCGGCCGCTTCGTCCTCGCCGAGCCCAAGCCGGAGCCCGTC
CTCCCCGCGGAGTACGAGGAGATAGCCCGGCGCGGCTTCTCCGACGAGGACGCCATGCGGTGGGCGCGGGACGACTACCT
CCGCGACGAGATGGTCCGGCAGCACCGGGCCCTGGAGGAGATCGCCGCCCGCAAGCGTGGGCGCGAGGACGAGCACGGCG
TCGTGGTCCTCGACAGCGACGACGACGACGACGCCCCCGGACCGTCCAACCCGACGCGCCAACCGGGGGAGGAATGCAGT
AGGGACGGCGGAGGCGGTGACGACGACGACGGCGGTGACTACACGCGGTTCTACCGCCTCCTCGGCATGTAGAACCGCGT
GGGCGGGCGGCGAGGGAGACGGCGGGGATAGCCCGCGTAGTTTTTTTTTTGTAAAATATGTTTAAGTTTGAATGAACTCG
CCGATGTTTGCGTTAAATTTGAGTCATTTTTGTGCCGTGTTTGATTTTTTTGACTAACCGTGGGCGCCGCGACTGGGGGG
CATCACGCCCCTAGTGCGCGGTTTAGCGCCGGTGCGTCCTCAGGGGGCGGTTTTTTGCCTCTCCTGGAGGGCCAACGGCT
GGAGATGCCCTTACACACCTGGCCCGCCAAACCAGCCATTCAACATC--CATTTTTTCCTAAAGAAAGACCGTTGATGGA
GTCCCCACGGGAGCTCTAGAACTTTCCGCGTTGCCGCATCCCGCGCGTACCACCACGTTTCAGAAGTTTCCGTCACCTTC
CAGAATCCAGACTCCCCGCCTC--------CGGCCACCGATATAAACTCCCTCCGCCCC----CCGTCGCATCATCACCG
AGGCATTCCACAAAA--------T-CAGCAAGCGATCCAACGC-A-GTCCAATCGGAGGAGA--CCGATCGATCGAGCTC
GGAGATCAG-CAGCGAG-CGAGAATGGAGGCCAGGATGTTCGGGCTGGAGACCCCGCTGATGGCGGCGCTGCAGCACCTG
CTGGACATCCCGGACGGCGAGGCCGGCGGGGCCGGAAACGCCGGCGGCGAGAAGCAGGGCCCGACGC------GCGCCTA
CGTCCGCGACGCGCGCGCCATGGCGGCCACCCCCGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGTGGACG
TGCCGGGGCTCGCGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTCATCAGCGGCGAGCGCCGGAGG
GAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCCGAGAA
TGCTGACATGGAGAAGGTCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCTCCGTGGAGAAGCTGCCGCCGCCCGAGC
CCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA--------G----ATGGATGGGACGACCGAACCAGAGAGA
AGGTCCTTTGCCTGCACGCCTGATCGAAGTTGAGTGGG-----------TAGTGATCGATGATTAGGGAGTGAGTTTCCC
ATGATGCGTGATGTGTC---TGTTTTTTCTATCTCTGCTCGTGTGGTGTCCGAGAGTGTTGTGTGGCTAGTTTCCGCTTT
CAGTGCGCAATTTCAATGAAATTTCGGGAATATCATCAGTTTTGG---------------------TTCTTCCA------
----------------------------------AAATACTTCAGTAATCTTGGTGGCGCATACAACTTCAAATAATTCT
CTATCATCTGTTTGTTTCT-TCAAAATATTGGTTTGGATCCCAAAATCAAATATTAGTGGACATTTAAGTCCCCTGGCTG
AAATGAAAAACAGAGTCACTGGATTTCAATGGAAGTCAGTTAATTCACCCATGATT------------------------
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-------------------------------
>chr3D_548
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-----------------------------------------------------------------------------TAC
TACACATCTTTGTTATTTCGAGGTGACTGACATTTATCCCAGTTTGTTCCTCACCACCTTGCAATGCTCCTAGTCTCTGA
ATTCGACAGAAACCAGCACTGGTCGCAGATATGCACGGGAGGATTGGAGAAGTTTCTGGAGAACGGATCATCTTTCCAAA
AATAAAAGTTAACGGAAAA--------------------TATCTCTGCTCCTA--------AGAAGCGAGA---------
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--------------------------CCAAACCAGCCACTCAACATTTTCATTTGTTCCTAAAGAAAGACCGTTGATGGA
G------------CTCTAGAACTTTCCACGTTGCCGCATCCCACGGGTTCCACCAAGTTTCAGAAGTTTCCGTCACCTTC
TAGA---------------CTC--------CGGCCACCGATATAAACTCCCTCCTCCTC----CCGTCGCATCATCACCA
ACGCAGTCCACAAAAA----AAAT-CAGCAAACAATCCAACGC-A-GTCCAATCCGAGGAGA--CCGACCGATCGAGCTC
GGAGATCAG-CAGCGAC-CGAGAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGCACCTG
CTGGACATCCCCGACGGCGAGGCCGGCGGGCCCGGCAACGCCGGCGGCGAGAAGCAGGGCCCGACGC------GCGCCTA
CGTCCGCGACGCGCGCGCCATGGCGGCCACCTCCGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGTGGACG
TGCCGGGGCTGGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTGATCAGCGGCGAGCGCCGGAGG
GAGGAGAAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTGCCGGAGAA
CGCCGACACGGAGAAGATCTCCGCGGTGTGCCGCGACGGGGTGCTCACCGTGTCCGTCGAGAAGCTGCCGCCGCCCGAGC
CCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGACTCTGAGAG----ATGGATGGGACGACGGAGCCAGAGAG-
AGGTCCTTTGCTTGCACGCCTGATCGAAGCTGAGTGGG-----------TAGTGATCGATGATTAGGGAGTGAGTTTCCT
GAGATGCGTGATGTGTG---TGTGTTTTCTATCTCTGCTCGTATGGTGTCCGAGAGTGTTGTGTGACTAGTTTAAGCTTT
CAGGGCGCAATTTCAATGAAATTTCTGAAATATCATTAACTTTGGTTCATACTGAAATAATTGCCTTTCTTCCA------
----------------------------------AAATATCTCAGTAATCTTGGTGGCAGACACAACTTCAAATAATTCT
AAATCATTTTTTTGTTTTTA--AAAATATTTGTTTGGATCCCAAAATCAAATTTTAGTGGACATTTAAGTCCCCTGGCTG
AAATGAAAAACAGAGTCACTGGATTTCAGTGGAAGTCGGTTAATTCGCCCATGGTTGAAAGG----TGTTTGTGGTGGTT
TTTACTAGGTATATAATCAGAATTTTGGATGTA-----------------------------------------------
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-------------------------------
>chr7B_782
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--------------------------------GCCGCACCGCGCTCGTTCCACCACATTTCAGAAGTTTCCATCACCTTC
CAGA---------------CTCCCCGCCTACGGCGACCTATATAATCTCCTTCCCCCTC----CCGTCGCATCACAACCA
AAGCATTCCACAAAA--------T-CAAGAAGCAGAC--AAGC-AGTCCAACGCCGAGGAGA--TCAATCACA-------
--------ATCACCGAG-TGAGAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGCACCTG
CTGGACGTCCCAGACGGCGAGTCCGGCGGAGCCGGCAGTGCCGGCGGTGAGAAGCAGGGCCCGACGC------GCGCCTA
CGTCCGGGACGCGCGCGCCATGGCGGCCACCCCCGCCGACGTGAAGGAGCTGCCGGACGCGTACGCCTTCGTGGTGGACA
TGCCGGGGCTCGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTGATCAGCGGCGAGCGCCGGAGG
GAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCCGAGAA
CGCCGACATGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCTCCGTCGAGAAGCTGCCGCCGCCGGAGC
CCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA----------------------------------------
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-------------------------------
>chr4D_880
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-------------------------------------------------------CCTCCTCGCCATCGCATCGCCACCA
AAGCATTCCACAAGA--------TTCAACGAGCGATCCAACGCAA-GCCCAACCCGAGGAGAGACCGACCGAGCTCGA--
-------GATCAGCGAG-CGAGAATGGCGGGCATGGTGTTTGGCTTGGAGAACCCGATGATGACCGCCCTGCAGCACCTG
CTGGACATCCCGGACGGGGAGGCTGGTGGAGCCGGTGCCGCCGGCGGCGAGAAGCAGGGCCCGACGC------GCGCCTA
CGTCCGCGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGTGGACA
TGCCGGGGCTCGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGAGGGTGCTGGTGATCAGCGGCGAGCGGCGGAGG
GAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTACGTGCTGCCAGAGAA
CGCCGACATGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCACCGTCGAGAAGCTGCCGCCGCCCGAGC
CCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGATGCATCGA--------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>chr3B_923
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------------------AAAATT-CAACAAACAATCCAAGGC-AAGCCCAACCCGAGGAGA--TCGACCGAGCTCGA--
-------GATCAGCGAG-CCAGAATGGCGGGCATGGTGTTCGGCTTGGATGCCCCGATGATGACCGCGCTGCAGCACCTG
CTGGACATCCCGGACGGCGAGGCCGGCGGGCACGGCAACGCCGGCGGCGAGAAGCAGGGCCCGACGC------GCGCCTA
CGTCCGCGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGTGGACA
TGCCGGGGCTGGGGTCCGGCGACATCCAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTCATCAGCGGTGAGCGCAGGAGG
GAGGAGAAGGAAGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCCGACAA
CGCCGACATGGAGAAGGTCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCACCGTCGAGAAGCTGCCGCCGCCCGAGC
CCAAGAAGCCCAAGACAATCCAGGTCCAGGTCGCCTGAGATGCAT-----------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>chr3B_980
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GGAGATCGATCAGCGAGCTGAGAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGCACCTG
CTGGACGTCCCGGACGGCGAGGCCGGCGGGCCCGGCAACGCCGGCGGCGAGAAGCAGGGCCCGACGC------GCGCCTA
CGTCCGGGACGCGCGCGCCATGGCGGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGTGGACA
TGCCGGGGCTCGGGTCCGGCGACATCCAAGTGCAGGTGGAGGATGAGCGGGTGCTGGTGATCAGCGGCGAGCGCCGGAGG
GAGGAGAAGGAGGACGCCAAGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTCCCCGAGAA
CGCCGACATGGAGAAGATCTCCGCCGTGTGCCGCGACGGCGTGCTCACCGTCTCCGTCGAGAAGCTGCCGCCGCCGGAGC
CCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGA----------------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>chr4D_980
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GGAGATCGATCAGCGAT-CGAGAATGGAGGGCAGGATGTTCGGGCTGGAGACCCCGCTGATGACGGCGCTGCAGCACCTG
CTGGACGTCCCGGACAGCGAGTCCGGCGGAGCCGGCAACGCCGGCGGCGAGAGGCAGGGCCCGACGC------GTGCCTA
CGTCCGGGACGCGCGTGCCATGGCTGCCACCCCGGCCGACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGTGGACA
TGCCGGGTCTGGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGCGCTGGTGATCAGCGGCGAGCGGCGCAGG
GAGGAGAAGGAGGACGCCAGGTACCTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGCTGCCAGAGAA
CGCCGACATGGAGAAGATCTCCGCCGTTTGCCGCGACGGCGTGCTCACCGTCACCGTCGAGAAGCTGCCGCCGCCCGAGC
CCAAGAAGCCCAAGACCATCCAGGTCCAGGTCGCCTGAGAATG-------------------------------------
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-------------------------------
>SNPs
-------------------------S-S------------S---------------------------------------
----------------------S---------------------------------------------------------
-----------------S----------------------S------------------------------S--------
------------------------------------------S-------------------------------------
-----S-SSSSSS--------------------------------------------------S----------------
----------------------S------------------S--------------------------S-S---------
---------------------------SS---------------------------------------------------
----------S-------S--------------------S-----------S----------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
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-------------------------------------------------------------------------SSS----
-------------------------------S------------------------------------------------
--------S-----------S-S-SS-S--------------------------------SSS-----------------
----------------SS------------S-------------------------------------------------
----S---------------------------------------------------------------------------
--------S----------------------------------S-----------------------SSSSSS-------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-------------------------------------------------SSSS---------------------------
--------------------S-----------SSSS-SSSSSSSSSSSS------------S------------------
-----------------SSS-----------------------------S------------------------------
------S-------------------------------------S------------------------SSS-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-S----SS---------S--S----------------------
------------------------------------------------------S---------------------S---
---------------S----------------------------------------------SSSS--------------
-------S------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2782
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TAAACTCCCTCCTCCTCCCG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>reverse_4326
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CGCGATCTGCACACATTCAG-------------------------------------------------------
-------------------------------
