>input_sequence_78368
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ATGGGAGCCACCGACGAGTCGGATCACGAC
ATGGAGAAACAGCAGCCGCTGCTGACCCCGGCGGCGGCGGCGGCGGACGAGATC------------------GGCTGCGG
CAACTGCAAGCCGTGCTCCTGCGCCTCGCCCACGGCGACGCGGACGCTCTCGCTGGTCGTCCTCGTTGCCGGCGCCCTGT
TCGCCGCGCAGCTGAAGGCGCGCGAGGAGTACCTCCTACTCACGGTGTTCGCGTCGCAGCTGCTCAGCTTCTGCGTCCTC
ACGTCGCTGCTGGCGCTGTGCGCGCTCCCCGAGGACGGCGCCCGGCAGCGGCTCGCGTGGGCTCGCGCCGCGGCCGCGCA
GGTGCTCCTGTGGTCGTTCGCCATGGCCCTCCTGGTGAGCATGTCGCTCTGGGTGGTCGGAAGCGCGCCGGTGGCCGTCG
GCGCGGCGCTGCTCGGGCTGGCCCTGGCCGTCGTCTTCGCCTGCTACGCCGAGCTCGTGCAGTCCCTCTGGCCTGTGGC-
--CTAG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr2D_1_TraesCS2D01G336000
AATCTCCCGCGTTGGCACGTTCGGGAAGTTCATGTCCCGACGAGACCGCCGGAGGCGCCACGCCGCCGCGTCGTACGCGT
GGGCGGCCTCGTGGGCGGTGTCGAAGGTGCTGAGGCCGAGGCGCATGTCGGAACGGATCTCCCGGGGCGGCGCAGCGGCA
TGGTGGCGCGGCGGTTGCGCGTTGACGGCGAGGCGAGAAAGCGGTAGAGGGAGCGGGGAGAGAGCGGCAGAGGGCGCGTG
GCGAGGTGGAGAGCGGTGGAAGGGCGCGTGACGGGCGCTGCATTTATAAAGCATGGCGGACGCCGCGCGCCAAAACTAGC
GCGCCAAAACTAGCGCGCGCCCGGCCAGGTTTCCGCGCGCGCGATCTTTTGCGCGCGCCTGAGTTTCCTGCCACCGCCCA
ACGCGCTAAAACCGCCTTTTACCCCGCGCGCGTTTTTTGCGGCTGCTGTTGAAGATACTCTAAGTGATGTCAAAAGCGCT
ATTATATTATGTCACGGAGGGAGTAAAAAAGCACATGCAGTCAGTACGCAGACCTCTGCCGTGGCAACCTTATTGAGCTA
AAAGAGCTGCCGTGGCAACGTTATTATTGAGCTAAAAAGAGCTGCCACTGCCATGGCACCATAACGAGACAGCACAAGTT
TACATCAACAAGCATCAGCTTGCAGAGTGTCAGCAAAGATCAAGGGGACTGCCCTTGCTCCCCGAGAGGGAAGAACATAC
ATAAGCTGTTGGATTTGGACCCACAGTTT----AAAAAAGATTGTACGAGGAGGGTTTT-GTTTTGGACTTTCTCGAGCT
ACCTAAGATACTCAGACGTACGCACATCCTTCCAATCTTGTAAATCCCGGTCGCCGTTCAAGCTTGGCCTTTTACACACA
CGTATATCTTGGTTCTGCCGCGCCCGAGCTTATCAGCAAGCGGCGCCTCCGCTTATATACCGCACCTCTGCAGTTCCGCC
TGCACGCATTCGTGG-----AGACAACCCGCGTACCATTGTGCGTGCGTGATGGGAGCCACCGACGAGTCGGATCACGAC
ATGGAGAAACAGCAGCCGCTGCTGACCCCGGCGGCGGCGGCGGCGGACGAGATC------------------GGCTGCGG
CAACTGCAAGCCGTGCTCCTGCGCCTCGCCCACGGCGACGCGGACGCTCTCGCTGGTCGTCCTCGTTGCCGGCGCCCTGT
TCGCCGCGCAGCTGAAGGCGCGCGAGGAGTACCTCCTACTCACGGTGTTCGCGTCGCAGCTGCTCAGCTTCTGCGTCCTC
ACGTCGCTGCTGGCGCTGTGCGCGCTCCCCGAGGACGGCGCCCGGCAGCGGCTCGCGTGGGCTCGCGCCGCGGCCGCGCA
GGTGCTCCTGTGGTCGTTCGCCATGGCCCTCCTGGTGAGCATGTCGCTCTGGGTGGTCGGAAGCGCGCCGGTGGCCGTCG
GCGCGGCGCTGCTCGGGCTGGCCCTGGCCGTCGTCTTCGCCTGCTACGCCGAGCTCGTGCAGTCCCTCTGGCCTGTGGC-
--CTAGCCAGTGACGGATGCCACCGAGG----AGGACCCATTTGCCAGG------------------------------A
ATTTCCTACTAGCTAGCGGGGCTTCTGCTAATACAAGCCCGTCGTCTTTTTCGGCCTTGGAT----TGGGCCAGTGTGCT
CATACAATGTCAGCCTGAATTAGTCCTGTTTGTACAAGTTGAGGCC----------------------------------
TGTTACCCTGTTCTCTCCCCTGCTCGTCGTATGGGAAATGGATTCCCTAAGAAGAACAAAATAAGAAGACTGATCTGATT
CATATGAAATTTCATGTGAGGGTCTCTTTACATGTCAGGGAATTAAAAATACAAGAACAGAGAAAACACATAATAATTAA
TATGAAATGTCGTATAAAATTCTATAAAGCATTTACAAAAAGCCACCGCTATTAGGTCAATTTAATAGAAATCACCCATT
TTTATTTTTCTGTCAAAAAGCACTGGCCATCGTAATTCTTTTTGCATAAAGCACTGATGGCTTAGTAATCAGGCGTTGAC
CTCGCTCCGCCCAGTGGGCCACCCGTTAGGCTGAGTTGGCAATATAATGCCACACGTGAGAGCAGAACCATCTGCCCCT-
-TCTCTCTCGTGCATTATGTCGAGCACCTTGGGTGCAGGTCATCACCTCCTCCAAGCCCAAGACGACCCTACGCGTCGTG
CCACCAACGGTGGATGTGGGAGTTCTTATTAGCCACGCTATGTGCTAGCGTTCGAGCCAGAGCGCACCTCCTCCCCCCTT
CCCCCGTGCAGCCCATGCGCATGGCGGCACACACCCTGTTATTTCCATTTCATTTTTTTGTTTTTTATTCTTTAAAATAA
TTTGGGATTTCAACAAAAATTCGAAAAAATCGAATTTTGAAATAAAGTTCAAGAAATCATGAAATGTTTTTGGATTAAAA
AATTGTTCATGAACTTGAACAAAATGTTCGTGAATTCAAAAAATGTTTGTAATTTTGTAAATGTTCACAAAACTCACAAG
ATGATTCTGAATTACAAAAAAGGTTCATCAATTCAAAATA
>chr2A_649
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CAAGCATCAGCTTGCAGAGTGTGAGCAATGATCACCGGGACTGCCCTTGCTCCCTGAGAGGGAAGAACATGC
ATAGGCTGTTGGATTTGGATCCACAGTTAAAGAAAAAAAGATTGTACGAGGAGGGTTTTTGTTTTGTACTTTCTCGAGCT
GCCTAAGATACTCAGACGTACGCAGGTCCTTCCAATCTTGTAAATCCCGCTAGCCATTCAAGCTTGGCCTTTTACACACA
CGTATATCTTGGTTCTCCCGCGCCCGAGCTTATCAGCAAGCGGCGTCTCCGCTTATATACCCCGCCTCCGCGGTTCCGCC
TGCTCGGATTGTGGAGACACAGACAACTCGCGTACCATTGTGCATGCGTGATGGGAGCCACCGACGAGCCGGATCCCGAC
ATGGAGAAGCAGCAGCCGCTGCTAGCC------GCGGCGGAGGCGGACGAGATCCCGCCGCCGTCCGGCGCCGGCTGCGG
CAACTGCAGGTCGTGCTCCTGCGCCTCGCCCACGGCGACGCGGACGCTCTCGCTGGTCGTCCTCGTCGCCGGCGCGCTGT
TCGCCGCGCAGCTGAAGGCGCGCGAGGAGTACCTCCTGCTCACGGTGTTCGCGTCGCAGCTGCTCAGCTTCTGCGTGCTC
ACGTCCCTGCTGGCGCTGTGCGCGCTCCCGGAGGACGGCGCCCGGCAGCGGCTCGCGTGGGCGCGGGCGGCGGCCGCGCA
GGTGCTGCTGTGGTCCTTCGCCATGGCGCTCCTGGTGAGCATGTCGCTATGGGTGGCCGGGAGCGCGCCGGTGGCCGTCG
GCGCGGCGCTGCTCGGGCTGGCCCTGGCCGTCGTCTTCGCCTGCTACGCCGAGCTCGTGCAGTCCCTCTGGCCTGTGGCG
GACTAGCCAGTGACGGATGCCACCGAGGGGCGAGGACCCATTTGCCAGG------------------------------A
ATTTCCTACTAGCTAGCCGGGCTTCTGTTA--ACAAGCCCGTCGTCTCTTTCGGCCTTGGATGAATTGGGCCAGTGTGCT
CATACAATGTCGGCCTGAATTAGTCCTGTTTGTACAAGTTGAGGCC----------------------------------
CGTTACCCTGTTCTCTCCCCTGC---TCGTATGGGAAATGGATTCCCTAAGGAAAA-AAAATAAGAAGAATGGTCTGATT
CATATGAAATTTCATGTGAATGCCTGTTTACATCGCAGGGAATTAAAAATATAG-AACAGAAACAACAC---ATAATTAA
TATGAAATGTAGTATAAATTTGTATAAAGCATT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr2B_750
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AAAAAAGATTGTACGAGGAGAGTTTTTGTTTTGGACTTTCTCGAGCT
ACCTAAGATACTCCGACGTA-GCACATTCTTCCAATCTTGTAAATCCCGGTCGCCATTCAAGCTT-GCCTTTTACACACA
CGTATATCTTGGTTCTGCCGCGCCCGAGCTTATCAGCAAGCGGCGTCTCCTCTTATATACCCCACCTCCGCAGTTCCGCC
TGCACGGATTTGCGG-----AGACAACTCGCGTGCCATTGTGCGTGCGTGATGGGAGCCACCGACGAGTCGGATCACGAC
ATGGAGAAGCAGCAGCCGCTGCTGGCC------GCGGCGGCGGCGGGCGAGATC------------------GGCTGCGG
CAACTGCAAGGCGTGCTCCTGCGCCTCGCCCACGGCGACGCGGACGCTCTCGCTGGTCGTCCTCGTCGCCGGCGCCCTGT
TCGCCGCGCAGCTCAAGGCGCGGGAGGAGTACCTCCTGCTCACGGTGTTCGCGTCGCAGCTGCTCAGCTTCTGCGTCCTC
ACATCGCTGCTGGCGCTGTGCGCGCTCCCGGAGGACGGCGCCCGGCAGCGGCTCGCGTGGGCGCGGGCGGCGGCCGCGCA
GGTGCTGCTGTGGTCGTTCGCCATGGCGCTCCTGGTGAGCATGTCGCTCTGGGTGGCCGGGACCTCGCCGGTGGCCCTCG
GCGCGGCGCTGCTGGGGGTTGCCCTGGCCGTCGTCTTCGCCTGCTACGCCGAGCTCGTGCAGTCCCTCTGGCCTGTGGC-
--CTAGCCAGTGACGAATGCCACCGAA-------GACCCATTTGGCAGGGATTTCCTTTTTTTTTAGACAATCAGCAGTA
ATTTCCTACTAGCTACCCGGGCTTCTGTTGATACAAGCCCGTCGTCTCTTTCGGCCTTGAAT----TGGGCCAGTGCGCT
CATACAACGTCAGCCTGAATTAATCCTGGTTGTACAAGTTGAGGCCTGTTACCAATGTCTCAAAAAAAAAAGTTGAGGCC
TGTTACCCTGTTCTCTCCCCTGC---TCGTATGGGAAATGGATAG-CTAAGGAAAA-ATAAGAAGAAGAATGATCTGATC
CATATGAAATTTCATGTGAGGGCTTCTTTGCACCGCAGGAAATTAAAAATATAGGAATAGAGAAAG--C---ATAATTAA
TATGAAATGTAGTATAAATTTCCAAAACCA-------------CACCGCAATTAGGTCAATTTAATAGAAATCACCGATT
TTTGTTTTTCTGTCAAAAAGCACTGGCCATCGTAATTGTTTTTGC-TAAAGCACCGATGGCGTAGTAATCACGCTTTCAC
GTCCCTCCAACCATTGGGCCCGTTCGTTAGGC----TGGTAAAATAATGCCACACGTCACATTTTGACTCCTCTTCCCCA
ATCTCCCTCGTGCATTATGTCGAGCACCTTGGGTGCATGCCATCACCTCCTCCATGCCCAA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS----------------------S-----S-----SS------------------S---------------S-
---S---------------S--------S---------------------------------------------------
-------------------------------------------------------S------------------------
---------------------------------------------S---------------S------S-----------
------S---S-S--------------S----------------------------------------------------
--------S---------------S--SSSSSS-----------------------------------------------
----------S-------------------------------------------------------S-------------
-------------------------------------S------------------------------------------
-----------------------------S--------------------------------S--S--S-----------
------S--------------------S----------------------------S---S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S---------S-------------------S--------------------------------
--------------------------------------------------------------------------------
-----------------------SSS-------------------------S-S--S------------S----------
----------------------S----------SS----------------S-S---------------SSS--------
----------S-------S--------------SSSSSSSSSS------S--------------------------S---
---S---------------------------------S-------S--------S------S---------S--S--S--
S--S----SS---S------SSSSSS-SS-SSSSSS---S--S--------------S-S-SSSSS--SSSSSSS---S-
-----S-------------------------------S-S--------------S------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_457
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------TGCGGCTGCTGTTGAAGATA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_2150
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------ATCTGCCCCTT
CTCTCTCGT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
