>input_sequence_78360
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----------------------------------------------------------------ATGGCCCGCATTGCGC
CGCTCGTGCTGGTGGCGCTGCTCTCCGTGCTGTCCGTGCCCTCGTCGGCGTGCCCCAGCTGCCCGACCCCGACGACGCCT
CCCCCGCCGCCGCCGCCGAAGGTGAAGCCCCCGCCCCCGCCGTCGTCGGTGCCGTGCCCTCCGCCGCCGTACTCCCCCGC
GCCGACGCCCCCGACGCCGGCGACGCCTAGCCCTCCGGCGCCGTCGTCGCCGACGGGCAAGTGCCCCGTGGACGTGCTGA
AGCTGGTGGCGTGCGTGGACGCGCTCAACGGGCTGGTGCACGCGGTGGTGGGCGCCAACGCCAGCGAGACCTGCTGCCCG
CTGCTGTCCGGCGTGGCCGACCTCGACGCCGCGCTCTGCCTCTGCACCACCATCAAGGCCAAGGCGCTGAACGTCAAGCT
CGTGCTCCCCGTCGCCATCTCGGTGCTCGTCAACCAGTGCGGCAAGCACGTGCCGTCCTCGTTCCAGTGCCCTTCATGA-
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>chr2A_1_TraesCS2A01G424800
GCATATGGTTGGACGATGACTCTTCCTTGTCATGCCCAAGAGCAGAGCTTGGGTGGTGTAAGTTGTGCCGAGACAACAGT
TACATATGAGGGACATTGATGGGCATCATGTTGCGCAATATTTATGTTAGTATTCCGCCCTTATGATTGAATGTTTTGGC
TCATCAATTCACCAAGATGCGATGAAGTCGGAGGTGATGTGTCGAGGGGCAACAAATTAAAGTGCGGCAACGATGTCAAG
TTGCAAGTCAAGCCACCGAAACCCGAGTTGCCTCTTCATCGATGGATGCCGTGGTCCGTAGTG---TATCAGGATGCATG
GACTTGGTGCATGCCTAGAGATGATCCGCATGACGGCGCTTTGTCCGCAGTGAAGTCGGAGTCGTTGAGTCATGGTGCCA
TGGGTGCTGATAAAGCCACTTATATG---------TGAAAAATTGATCTTCTCGGTGATGCGACCTTCAAGTTTGTGCCA
CTGTCATCATGTTTTTCTCAGATTAAACGGACGGCAAATTTCTCCTTAATCAACCCAAAAATGGGAAGGTTTCATCTCTC
CTT-----TAAGAAAAAAAAAGCAGAGGCTATGTAACGACTAGCGTGCGACGGTTGAAACGGCTTGGCTCGGCAGAGTCT
GCCGATTTAACCGCGACATGCAGACGCAGGCACCACACGATCGGCGATCTTCCACACACGCATGATTCCAGGAACAAAAC
GACGG-------AGACCTTGGTCGTCAGAAGCGGCCGTCGATGGATTCATCCGAGTCCACGCCAGCCACAATCTCGCTGC
CAGTGTACGACTGGGTACTGACTACTGAGGCGTACGCGACACTTCGCCGTGTCCACCGAGCCGCGACCGACGCACACCAG
CAGTTCGTCCGTCGCACCACGACCTCACGCTCGCCTATATAAGCACGCCCCGCTTCATCTTCTTCCCTCAGACCAGCGCA
GCGCAGGCTAGCCAAGAGCAAGAAGCTAGAGCACTTCAAACTCGAAGCTAGCTAGCCAGGCACCATGGCCCGCATTGCGC
CGCTCGTGCTGGTGGCGCTGCTCTCCGTGCTGTCCGTGCCCTCGTCGGCGTGCCCCAGCTGCCCGACCCCGACGACGCCT
CCCCCGCCGCCGCCGCCGAAGGTGAAGCCCCCGCCCCCGCCGTCGTCGGTGCCGTGCCCTCCGCCGCCGTACTCCCCCGC
GCCGACGCCCCCGACGCCGGCGACGCCTAGCCCTCCGGCGCCGTCGTCGCCGACGGGCAAGTGCCCCGTGGACGTGCTGA
AGCTGGTGGCGTGCGTGGACGCGCTCAACGGGCTGGTGCACGCGGTGGTGGGCGCCAACGCCAGCGAGACCTGCTGCCCG
CTGCTGTCCGGCGTGGCCGACCTCGACGCCGCGCTCTGCCTCTGCACCACCATCAAGGCCAAGGCGCTGAACGTCAAGCT
CGTGCTCCCCGTCGCCATCTCGGTGCTCGTCAACCAGTGCGGCAAGCACGTGCCGTCCTCGTTCCAGTGCCCTTCATGAT
CGCCGGCCTCCATCGATTAGCACCTACA---TACATACCAGATACCACTGTACCACCACCTGCATCCTCATGCATGCCCG
CGTGCATGGAGCTAGCGCCTTTTCAAGGTAAGTACGTATACGGAGTGTCTGCATGTTTGGTCATACATACATGCATGACA
CATGTCATGTGTAATCTCTATAACACATACATGCATGGGCAGCTAGCTCTGACTATCTTTCAGTGTGGAGCGGCGAACAT
GCGGTTGTGTAAATGTGTATCAAGTA-------------GTATATACTGT-ATCGTGCATAAGTGCAAAT----------
----------------------------ATACATGCGAGTTGTGATGTTGGGTGTGTAGCATTCTTTTTGACAGTTATGA
ATAAT-ATATAAAGTGATTGTAATGTGTATGGAGCTTCTCGCATGTATGCATGTCTTCCTTTTTGTGGAAAATTTTACGA
CTCCAAATCGGCAATGCTACACGTACAAACAGTTTACAGGCTTTTACAGATGGGTTAGTTTTTATTGGTCAACAAGTGAG
CGGGACGGCCTACCCCCTTGAAAATCGGAGGGGAGGGGGGGAGGTTTGTGATTGGTTGTTAGATGAAAAGAGCTTGTAAA
AGCTTATAAATCTTTGTATGTCTAGCATTTTTGACTCCAAATCCTCCTCGGCATGACAAGTCATCCTCTGACTCTAGATG
ATCATATTTATACTTTTCACCACTTGATAGGCTGGTCTCATGGCCGAGTCAATGACGCTGGTATCAATATTTCTGGCGTT
CGTGCCATC-GGGGGCCTCTTTGGATTGGAACGAAAAGAAC--T----------AGAAAACATAAAATATGACCAAGTTT
GCAGTAAAAACTAAAAACAGAATAATGACAAAAGCAGGATTCAGATATCATATCCTATGGATTGCTACCGGGTAAAA---
---AGATTGGAATCCTCAAAACTTTTCGTGAATATCTTACGGCCCAAAGAGGCCCTAGACAAGAAAAATGATGACAGGAG
ACAATATGGATTCATATGCAGCTGTCACGACTCA
>chr2B_1
GCATATTGTTGGACGATGACTCTTCCTTGTCATGCCCAAGAGCAGAGCTTGGGTGGTGTAAGTTGTACCGAGACAACAAT
TATATATGAGGGACATTGATGGGCATCATGTTGCGCAAAATTTATGTTAGTATTCCACCCTTGTGATTGAATGTTTCGGC
TCATCAATTCACCAAGACGCGATGAAGTTGGAGGTGATGTGTCGAGGGGCAGCAAATTAAAGTGCGGTAACGATGTCAAG
TTGCAAGTCAAGCCGCCGAAATCTGAGTCGCCTCTTCATCGATGGATGTCATGGTCCGTTTTAGTGTATCACGGTGCATG
GACTTGGTGCATGCCTAGAGATGATCCGCATGACGGCGGCTTGTCCGCAGTGAAGTCGGAGTCGTTGAGTCATGGTGCCA
TGGGAGATGATGAAGCCACTTATATGCACGGTTTGTGACAAATTGATCTTCTCGATGACGTGACCTTCAAGTTTGTGCCA
CTGTGATCATGTTTTTCTCAGATTAAACGGACGGCAAATTTCTCCTTAATCAACCCCAAAATGGGAAGGTTTCATCTCTT
CTTCTTTTTTT--AAATAAGAAAC-AGGCTATGT---GACTAACGAGCGACGGTTGAAACGGCTTGGCTCGGCAGAGTCT
GCCGATTTAACCGCGACATGCAGACGCAGGCACCACAAGATCGGCGATCTTCCACACACGCATGATTCCATGAACGAAAC
GACAAATCTCTCAGACCTTGGTCGTCGGAAGCGGCCGTCGATGGGTTCATCCGAGTCCACGCCAGCCACAATCTCTCTGC
CAGTGTACTACCGGGTACTGACTACCGAGGCATACGCGACGCTTCGCCGTGTCCACCGAGCCGCGACCGACACACACCAG
CAGTTCGTCCGTCGCACCACGACCTCACGCTCGCCTATATAAGCACGCCCCGCTTCTTCTTCTTCCCTCAGACCAGTGCA
GCGAACGCTAGCCAAGAGCAAGAAGCTAGAGCATTTCAAGCTCGAAGCTAGCTAGCCAGGCACCATGGCCCGCATTGCGC
CGCTCGTGCTGGTGGCGCTGCTCTCGGTGCTGGTCGCGCCCTCGTCGGCATGCCCCAGCTGCCCGACCCCGACGACGCCT
CCCCCGCCGCCGCCGCCGAAGGTGAAGCCCCCGCCCCCTCCGTCGTCCGTGCCGTGCCCTCCGCCGCCGTACTCCCCCGC
GCCGACGCCCCCGACGCCGGTGACGCCGGCCCCTCCGACGCCGTCGTCGCCGACGGGAAAGTGCCCCGTGGACGTGCTGA
AGCTGGTGGCGTGCGTGGACGCGCTCAACGGGCTGGTGCACGCGGTGGTGGGCGCCAACGCCAGCGAGACCTGCTGCCCG
CTGCTGTCCGGCGTGGCCGACCTCGACGCCGCGCTCTGCCTCTGCACCACCATCAAGGCCAAGGCGCTGAACGTCAAACT
CGTGCTCCCCGTCGCCATCTCGGTGCTCGTCAACCAGTGCGGCAAGCACGTGCCGTCCTCGTTCCAGTGCCCTTCATGAT
CACCGGCCTCCGTCGATTAGCACCTACC---TACAT----------ACTGTACCACCACCTGCATCCTCATGCATGCCCG
CATGCATGGAGCTAGCACCTTTGCAAGGTAAGTACGTATACGGAGTGTTTGCATGTTTGGTCATACATACATGCATGACA
CATGTCATGTGTAATCTCTATAACACATGCATGCATGGGCAGCTAGCTCTGGCCATCTTTTGGTGTGGAGCAGCGAACAT
GCG-CTGTGCAAATGTGTATCAAGTACTCT--------AGTATATACTGT-ATCGTGCATAATTGCATATATACATGCGA
GTTGTGTCCCCCGCAAAAAAAAAAAAAAATACATGCGAGTTGTGATGTTGGCTGTGTAGCATTCTTTTTGACAGTTATGA
ATAAT-ATTAAGTGATTGTGTAATGTGTATGGAGCTTCTCGCATGTATGG-TGTCTTCCTCTTTGAGTAAAATGTTACGA
CC------------------------------------------------------------------------------
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------------------------------------CCAAATCTTCCTCGGCATAAAAAGTCATCCTC-GACTCCATATG
GTCATATTTGTACTTTTCACCCCTTAATAGGCTGGTCTCATGGCCGAGTCAATGACTCTGGTATCAATATTTCTGGCGTT
CGTGCCATC-GGA-GCCTCTTTGAATTGGAACGAAAGAACTAGT----------AGAAAACATAAAATATGACCAAGTTT
GCCGTAAAAACTAAAAACAGAATAATGACGAAAGCAGGAATCAGACATCATATCCTATGGATTGCTACTGGGTAAAATTC
TAAAGATTAGAATCCTCAAAGCTTTTCATGAATATCTTGCGGTCCAAAGAGGCCGTAGACAAGAAAAATGATGACAGGAG
AGAATATGGACTCATATGCAGCTGTCACGACTCA
>chr2D_242
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-TGCAACTCAAGCCGCCGAAATCTGAGTTGCCACTTCATTGATGGATGTCATGGTCCGTTGTGGCGTATCGGGGTGCATG
GACTTGGTGCATGCCTAGAGATGATCGGCACGGCGGGG-TTTGTCCGCAGTGAAGTCGGAGTCGTTGAGTCATGGTGCCA
TGGGTGCTGATAAAGCCACTTATATGCGCGGTTTGTGAAAAATTGATCTTCTCGGTGATGTGACCTTCAAGTTTGTGCCA
CTGTGATCATGTTTTTCTCAGATTAAACAGACGGCAAATTTCTCCTTAATCAACCCAAAAATGGGAAGGTTCCATCTCTT
TATATATATAAGAAAAAAATAAAC-AGGCTATGTAACGACTAACGTGCGACGGTTGAAACGACTTGGCTCGGCAGAGTCT
GCCGATTTAACCGCGACATGCAGACGCAGGCACCACACGATCGGCGATCTTCCACACACGCATGATTCCAGGAACAAAAC
GACAG-------AGACCTTGGTCGTCGGAAGCGGCCGTCGATGGATTCATCCGAGTCCACGCCAGCCACAATCTCTCTGC
CAGTGTACTACCGGGTACTGACTACTGAGGCGTACGCGACACTTCGCCGTGTCCACCGAGCCGCGACCGACACACGCCAT
CAGTTCGCCCGTCGCACCACGACCTCAAGCTCGCCTATATAAGCGCGCCCCACTTCATCTTCTTCCCTCAGACCAGT---
--GAACGCTAGCCAAGAGCGAGAAGCTAGAGCACTTCAAACTCGAGGTTAGCTAGCCAGGCTCCATGGCCCGCATTGCGC
CTCTCGTGCTGGCGGCGCTGCTCTCCGTGCTGGTCGCGCCCTCGTCGGCGTGCCCCAGCTGCCCGACCCCGACGACGCCT
CCCCCGCCGCCGCCGCCGAAGGTGAAGCCCCCGCCCCCGCCGTCGTCCGTGCCGTGCCCCCCGCCGCCGTACTCCCCCGC
GCCGACGCCCCCGACGCCGGCGACGCCGACCCCTCCGGCGCCGTCGTCGCCGACGGGCAAGTGCCCCGTGGACGTGCTGA
AGCTGGTGGCGTGCGTGGACGCGCTCAACGGGCTGGTGCACGCGGTGGTGGGCGCCAAGGCCAGCGAGACCTGCTGCCCG
CTGCTGTCCGGCGTGGCCGACCTCGACGCCGCGCTCTGCCTCTGCACCACCATCAAGGCCAAGGTGCTGAACGTCAAACT
CGTGCTCCCCGTCGCCATCTCGGTGCTCGTCAACCAGTGCGGCAAGCACGTGCCGTCCTCGTTCCAGTGCCCTTCATAAT
CCACTCCATCGATCGATTAGCACCTACTACATACAT----------ACTGTACCACCACCTGCATCCTCATGCATGCCCG
CGTGCATGGAGCTAGCACCTTCTCAAGGTAAGTACGCATAG--------------------------TACATGCATGCCA
CATGTCATGTGTAATCTGTATAACGCATACATGCATGGGCAGCTAGCTCTGGCTATCTTTTGGTGTGGAGCAGCGAACAT
GCG-TTGTGTAAATGTGTATCAACTATCAAGTACTAGCAGTATATACTGTAATCGTGCATAATTGCTTATATACATGTGA
CTGTGT------------------------------GAGTTGTGATGTTGGGTGTGTAGCATTCTTTTTGACAGTTATTA
TGAATAATATAAAGTGATTGTAATGTGTATGGAGCTTCTCGC-TGTATGG-TGTCTTCCTCTTTGAGGAAAATGTTACGA
CC------------------------------------------------------------------------------
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------------------------------------CCAACTCTTCCTCGGGATAAAAAGTCACCCTC-GACTCCATATG
GTCATATTTGTACTTTTCACCCCTTGATAGGCTGGTCTCACGGCC-AGTCAATGACGCTGGTACCAATATTTCTGGCGTT
CGTGCCATCGGGA-GCCTCTTTGGACCGGAACGAAAGAACTACTCCAAAGAGGAAGAAAACATAAAATATGACCAAGTTT
GCCGTAAAAACTAAAAACAGAATAATGACAAAAGCAGGATTCAGACATCATATCCTATGGATTGCTACTGGGTAAACTTC
TAAAGATTGGAATCCTCAAAGCTTTTCGTGAATATCTTACGGTCCAAGGAGGCCCTAGACAAGACAAATGATGACAGGAG
ACAATATGGACTCATATGCAGCTGTCACGACTCA
>SNPs
------S-----------------------------------------------------------S-----------S-
--S-----------------------------------S-----------------S-----S-------------S---
-----------------S----------S----------------------S---------------S------------
--------------S------S-S------------------------S-S--------S-------------S------
--------------------------------------S-----------------------------------------
------------------------------------------------------------S-------------------
----S--------------------------------------------------------------------------S
-------------------S-SSSS-----------------S-------------------------------------
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---S----------------------S------------------------------------------------S----
--------S--S-----------------------------------------------------------S--------
----------------------------------------------------------------------------S---
---S-S--------------------------------------------------------------------------
--------------------------------SS--S-------------------------------------------
-----------------------------------------------S--------------------------------
---------------------------S-S--------------------------------------------------
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-----------------------------------------------------------------------------S--
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-S-------------------------S--------SSSSSSSSSS----------------------------------
----------------S-------------------------------S-------------------------------
---------------------------------------------------S--------SS---------S--------
---S----------------------------------------------------------S----S------------
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-------------------------------------------------SS---------S----S-------S------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S----------S-S-----------S-----S-S---
S--------S-----------S----------------------------------------------------------
------------SS----------------------SS-SS---------------------------------------
--S------------------------------------------S----------------------S-----------
--------------------S---------------------S-------------------------------------
----------S-----------------------
>forward_262
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--GCAAGTCAAGCCACCGAAAC----------------------------------------------------------
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>reverse_2086
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-----CGGCCTACCCCCTTGAAAAT-------------------------------------------------------
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