>input_sequence_78353
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-------------------------------------------ATGAAATCCGCGATGCTTCCCCTCCTCCT--------
-CCTGCTCGCCGTCGCCGGCCCCGCCGCCGCGAAGCCGACGGCCTACGAGGCGCTGGCGGCCTTCGACTTCCCCCCGGGC
ATCATCCCCAAGGGGGTCGTCTCCTACACCCTCGACAACGCCACCGGCGACTTCACGGCGCACATCAACTCCTCCTCCAC
CTGCGAGTTCTCCATCCAGGGCTCCTACTCGCTCCGCTACAAGCCCGACATCAGCGGCCGCATCTCCGTCGACCGCCTCA
CCAACCTCCAGGGCGTCACCGTCAAGGTCCTCTTCTTCTGGCTCAACATCGTCGAGGTCACCCGCAGCGGCGACCAGCTC
GGCTTCTCCGTCGGCATCGCCTCCGCCGACTTCGGCCTCGACAACTTCCTCGAGAGCCCCACCTGCGGCTGCGGCTTCGA
CTGCAACGACCTGCTGCTGCCGCGGTCCACCGCCGGGTCAAGCCTGCGCCTGCGAGGTGCGTTCTAG-------------
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>chr1A_1_TraesCS1A01G231000
ACCGCCACGACAACGAGGTTGTCACGTCCACATCCGCCGTCGTTGATAGAGTAGAAGGATAGAACATGGGAGGCCACACG
TCGCCGCTGGGGTCCCAGGAATGCCACCGCCAACATCTTGTCGGGCCTCCCAGCCGATGAGCTTGCCCGAGCTTCACGGA
GGTCACTACTCTTTCACTCCCACTGAAGCTTCACTTACGGGGGCTCATGGCCGGTGGATGAGCATGTTCTCGTGGGAAAC
GGGCGCCGCCACGGCCGGCGATCATTTAGATTAGGTTAGAATAGTCTAACCCACTATAATTTAGTTAAAATATGTCGTGA
ATTTTCGTCCGGTTTAGATGAAAACCATCTTGTTTGTTCAAATCCAGTTTAAAAATTATGCGAACATGATTGGATAGCCG
GCTTCCGTATCACTATGGGCACATTCACGAACGGTTACCATGCTCGTTTTAAGAGTCGGGGTTGGAGGGGATGGGGATAT
TGAACTTTCCATCAGTTGAAGAGCTAAAACATAAGAAAACTGCGGTTCGCTACCTCCGAAAGCAATCAAAAACTAACACG
ACCACGTTTGATCTGCTTTTGCCTTACCAATTCTTGGTCTGGATTTGTGTGCGTTTGTACTTAGGAAGAAAATCCTATTT
TTGTGAACGAATATCCTAAAAGGCAAGATATGTATTTATATTTTTTGCGAGGGAAAGATATGTATTTTGTGTGTGTAAAA
AATAGGAGAGTGAGCACAGGTGCACCATAGAAAGAGAAGTGTT--TTATTCTAAAAAAATGAGTGTTTTTACACATCATA
TCATAGAAAAGACAAAAAAAAAGTCTCAACCAAAGACAAAATTTTCTTTCGACTATTTCATTTTTTGTTAGC--------
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--------------------------------------------------------------AGGGTGCACTGTCAGATT
AGCTAGCATGTGGACCCGCTGTCT-TTAACACCGGCGCATCCCCAGATCTCCT------CCCAACGACCTCAAGCAAGCT
ACC--CCCGAAGCCACCGCTGAAGAAACAAG--AAAAAGGAGAATGAAATCCGCGATGCTTCCCCTCCTCCT--------
-CCTGCTCGCCGTCGCCGGCCCCGCCGCCGCGAAGCCGACGGCCTACGAGGCGCTGGCGGCCTTCGACTTCCCCCCGGGC
ATCATCCCCAAGGGGGTCGTCTCCTACACCCTCGACAACGCCACCGGCGACTTCACGGCGCACATCAACTCCTCCTCCAC
CTGCGAGTTCTCCATCCAGGGCTCCTACTCGCTCCGCTACAAGCCCGACATCAGCGGCCGCATCTCCGTCGACCGCCTCA
CCAACCTCCAGGGCGTCACCGTCAAGGTCCTCTTCTTCTGGCTCAACATCGTCGAGGTCACCCGCAGCGGCGACCAGCTC
GGCTTCTCCGTCGGCATCGCCTCCGCCGACTTCGGCCTCGACAACTTCCTCGAGAGCCCCACCTGCGGCTGCGGCTTCGA
CTGCAACGACCTGCTGCTGCCGCGGTCCACCGCCGGGTCAAGCCTGCGCCTGCGAGGTGCGTTCTAGGATCCCCCACCGA
GCTCTCTCACAAGTC--------ACAAGCGCCCCTTCAAAATTAAGCTAGTTCTTGGATGGATTATTCATGCTCTTGTTG
CTCGAAGATACCAAGGGGCTGGTAGTATTTTCTAGTGCTGTTCCTGTTTTAGATGGACCAACAATTTCAGGACTCGATTT
CGATGGGTCCGTGTGTGAGTGCTGTACTGTTTCATCAGAAAGTTTAGAGTAAAACACTTGAGATTAATAAAAGTTTCATA
TTCCTAAATACTACCTGTGATCTATTCATGTTC---------------TGCGCAGTTCTGATTAATCAGACAGTTCCTTT
TGTGATATGGAGTTCTTCTATTGAATCTTTGCGAACATATCAAGCTGATGC----GCCCACAAAAAAATTAATTCTAGCT
CCCGGCTTCTGCATCCATGATCAATCTTCTATGTATTCATGTTCTGTGCCCTTCATTTTGTGGCATATTTTGATCAATCA
GACAGTTCTTTCTTTGACATGG--------AAGCCTCTTACTGAATCTTTGCAAGCATATCAAGCCTGATACACCCACAA
AAGAAGCGCTAGCTCCCCATCCACGATGCATACAGAATTACAGACCATGAAAGTACAGCCAGCACATACTTGGAACAAAC
CAGCTGATACAAATTCTCTGACAGAACGATGAAAG-AAAACCGAATAGCAAAATCACAGCCAATACATATACTGTGGGAA
CAAACATGCTGATACCAAAGAGCTTCCTTAAAAAAAACTGATGATACCAAAGTTCTAACAGAAAGATGAAAAATTAACTG
GAATAGCAAAATCACTCAGGATGCCATGAATCAGGCAGGCTGGAAGGCCGAAGGTGTTTCTTCTATCCTATGTATGAATA
GTGTGCTAACTACTATTTGGTCTGGCACTTGGAAGCACTACAGGGTGCAGGGTATTGTAGCTTAAGCTTGAGATTGTTTG
TTGAGATTCAATATCTT----------ATGAGAGTAGTATATTCTTCTCGTCTGCTAAGACAGAGAGCTGGAA
>chr1D_692
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---------------------------------------------------GGCAAGATGTGTATTTTTCGTGTGTAAAA
--TAGAAGTGTGAGCACAGGTGCGTCATAGAAAGAGAAGTGTTCATTATTCTAAAAAAGA-AGTGTTTTTACACATCGTA
TCATAGAGAAGACAAAAAGAATTCTT-AACCAAAGACAAAATTTTCTTTCGACTATTTCATGTTTTGTTAGAGCAACTCT
AGCAGACCCCGCAAAAACTTGACCTGCAAAACGCGTTTGCAGTTTCACGAAGATCGCATTTGCGGGTCGAAAACTAGCGC
AGCCGAACAGACACCGTAAAACAAACTGTAAAACTGGAATAAAGAGCTCCTTCCTCCAGTCCGGCCGTTGCCGCCCCTTC
CTCCAGCCGGCCGTGCCCAACCCCGTCGGCCGCGCCCCGTCGCCAGCAGGCCATGCCCCGTCGCCTGTCGGCCGCGCCTC
ATTGCCCATCGGTCGCGCCCAGTCCCTGCCGGTCGCGCCCCATCACCGTGCCGGTCGCGCCCAGCCTCGCCGGCCACGCC
CCGTCGCCTCCGTCGTCCGCGCCTTGCTCTATTGCCAGGCGAGCTGTGCCCCTTTGCCTGCCGCGTCGGGAGGATTCCGG
CGGCCAGGCTGAGGTCATGGGAGGCCACGACGATGTCGAGCTCGTCCAATTCGAACCGGCGGCGATCGATTGCGGCGTCT
ACCGGCCTTTTCCGATGTACGGTGATGAATTCCGGCGAGTTTAGGGCGGATTCCGGTAAACTCCGCGGCGGCGTGTTTGC
TCCGACGAGGTTTGACCGGTATACGGGGCCCCCTATATTCGGCCTTCCAACCTCCAAAGATAAGGGTTTCAGGTGTGCAT
TTGTGGTGGCCCTTAAAATTTTTACAGGTTGGACTACTTTTACTGTTTCTATTCTGCACATTTTTTTGCCTAAAATTGTA
AAACGCAAAAATTATGTGGGTTTGACCACTTATGCGGGGTCTGCTAGAGATGCTGTTAAGCAA-GGTGCACTGTCAGATT
AGCTAGCATGTGGACCCGCTGTCTTTTAACACCGGCGCATCTCCAGATCTCCT------CCCAACGACCTCAAGCAAGCT
ACC--CCCGAAGCCACCGCTCAAGACCAAGGAAAAAAAGGAGAATGAAATCCGCGATGCTTCCCCTGCTCCT--------
-CCTGCTCGCCGTGGCCGGCCCCGCCGCCGCGAAGCCGACGGCCTACGAGGCGCTCGCGGCCTTCGACTTCCCCCCGGGC
ATCATCCCCAAGGGGGTCGTCTCCTACACCCTCGACAACGCCACCGGCGACTTCACGGCGCACATCAACTCCTCCTCCAC
CTGCGAGTTCTCCATCCAGGGCTCCTACTCGCTCCGGTACAAGCCCGACATCAGCGGCCGCATCTCCGTCGACCGCCTCA
CCAACCTCCAGGGCGTCACCGTCAAGGTCCTCTTCTTCTGGCTCAACATCGTCGAGGTCACCCGCAGCGGCGACCAGCTC
GGCTTCTCCGTCGGCATCGCCTCCGCCGACTTCGGCCTCGACAACTTCCTCGAGAGCCCCACCTGCGGCTGCGGCTTCGA
CTGCAACGACCTCCTGCTGCCGCAGTCCACCGCCGAGCCGAGCCTGCGCCTGCGAGGTGCGTTCTAGGATCCCC-ACCGA
GCTCTCTCACAAGTC--------ACAACGGCCCCTTCAAAATTCAGCTAGTTCGTGGATGGATTATTCATGCTCTTGTTG
CTGGAAGATACCAAGGGGCTGGTAGTATTTTCTAGTGCTGTTCCTGTTTTAGATGGACCAACAATTTCAGGACTCGATTT
CGATGGGTCCGTGTATGAGTGGTGTACTGTTTCATCAGGAAGTTTAGAGTAAAACACTTGAGATCAATAAAAGTTTCATG
TTCCTAAATAC---CTGTGATCTATTTCATGTTTTGCGCCTTCCATTTTGCGGCATACTGATTGATCAGGCAGTT-CTTT
TGTGAAATGGAATTCTTCTATTGAATCTTTGCAAACATATCAAGCTGATGT----GCCCAACAAAGAAG---TTCTAACT
CCTGGCTTCTGCATCCATGATTAATCTTCTATATATTCATGTTCTGTGCCCTTCATTTTGTGGCATATT--GATCAATCA
GACAGTTCTTTCTTTGAAATGG--------AGGCCTCTTACTGAATCTTTGCAAGCGTATCAAGC-TGATGCACCCACAA
AAGAAGTGCTAGCTCCCCATCCACGATGCGTACAGAATTACAAACCATAAAAGTACGGCCAACACATACTTGGAACAAAC
CAGCTGATACAAATTCTCTGACAGAACGATGAAAGAAAAACCGAATAGCAAAATCACAGCCAATACATATACTGTGGGAA
CCAACATGCTGATACCAAAGAGTTATT---AAAAAAACTGCTGATACCAAAGTGCTAACAGAAAGATGAAAAATCAACTG
GAATAGCAAAATCACTCAGGATGCCATGAATCAAGCAGGCTGGAAGGTCGAAGCTGTTTCTTCGATCCTACGTATGAATA
GTGTGCTAACTA---TTTGGTCTGGCACTTGGAAGCACTACAGGGTGCAAGGTAT-------------------------
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>chr1B_860
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-------------------------------------------------------------TTCTTGTTAGC--------
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--------------------------------------------------------------A-GGTGCGCCATCAGATT
AGCTAGCATGTGGACCCTCTGTC--TTAACACCGTCGCATCTCCAGATCTCTTGTGAAACCCAACGACCTCAAGCTAACC
CCGAACCCGAAGCCACCGCTCAAGAG------AAAAAACAACAATGAAATCCGCGATGCTTCCCCTCCTCCTTGTGCTCC
CCCTGCTCGCCGTCGCCGGCCCCGCCGCCGCGAAGCCGACGGCCTACGAGGCGCTCGCGGCCTTCGACTTCCCCCCGGGC
ATCATCCCCGAGGGGGTCGTCTCCTACACCCTCGACAACGCCACCGGCGACTTCACGGCGCACATCAACTCCTCCTCCAC
CTGCGAGTTCTCCATCCAGGGCTCCTACTCGCTCCGCTACAAGCCCGACATCAGCGGCCGCATCTCTGTCGACCGCCTCA
CCAACCTCCAGGGCGTCACCGTCAAGGTCCTCTTCTTCTGGCTCAACATCGTCGAGGTCACCCGCAGCGGCGACCAGCTC
GGCTTCTCCGTCGGCATCGCCTCCGCCGACTTCGGCCTCGACAACTTCCTCGAGAGCCCCACCTGCGGCTGTGGCTTCGA
CTGCAACGACCTCCTGCTGCCGCAGTCCGCCGCCGAGTCGAGCCTGCGCCTGCGAGGTGCGTTCTAGGATCCCC-ACCGA
GCTCTCTCACAAAGTCACAAGTGACAAGCGCCCCTTCAAAATTCAGCTAGTTCTTGGATGGA-TATTCTTGCTCTTGTTG
CTGGAAGATACGAAGGGGCTAGTAGTATTTTCTAGTGATGTTCCTGTTTTAGATGGACCAACAATTTCAGGACTCGATTT
CGATGGGTCCGTGTGTGAGTGCTGTACTGTTTCA---GAAAGTTTAGAGTAAAACACTTGAGATCAATAAAAGTTTCATA
TTCCTAAATAC---CTGTGATCTAGTTCATGTTCTGCGTCTTCCATTTTGTGGCATACTGATTAATCAGGCAGTT-CTTT
TGTGAAATGGAATTCTTCTATTGAATCTTTGCAAACATATCAAGCTGATACATACGCCCAACGAAGAAG---TTCTAGCT
CCTGGCTTCTGCATCCATGATTAATCTTCTATGTATTCATGTTCTGTGCCCTTCATTTTGTGGCATATT--GATCAATCA
GGCAGTTCTTTCTTTGAAATGGAGGCCTCTAGGCCTCTTACTGAATCTTTGCAAGCATATCAAGC-TGATACATCCACAA
ATCAAGTGCTAGCCCCCCATCCACGATGCATACAGAATTACAGACCATAAAAGTACAGCCAACACATACTTGGAACAAAC
CAGCTGATACAAATTCGCTGACAGAATGATGAAAGAAAAACCGAATGGCAAAATCACACCCAGTACATATACTGTGAGAA
CAAACCTGCTGATGAAGAGTTG---------------CTGCTGATATCAAAGTGCTAACAGAAAGATGAAAAATTAACTG
AAATAGCAAAATCACTCAGGATGCCATGAATCAGGCAGGCTGGAAGGTCGAAGCTGTTTCTTCGATCCTATGTATAAATA
GTGTGCTAACTACTACTATTTGGT-----------CACTACAGGGTGCAAGGTATTGTAGCTTAAGCTTGAGATTGTTTG
TTGAGGCTCAATAACTTCCATTTTCTTATGAGAGTAGTATATTCTTCTCGTCTGCTAAGACAGAGAGCTGGAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----S--------SS----------
SS---S--S--------------SS---------------------------------SSS----------------S--
-------S----------S--SSSS-S-----------------------------------------------------
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---------------------------------------------------------------S----------------
-----------------------------------------S--------------------------------------
--------------------S----SSS-S--------------------------------------------------
-------------------------------------------------------S------------------------
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------------S----------S-----------S---S----------------------------------S-----
-------------------------------------------S------------------------------------
--S-----------------------------------------------------------------------------
----------------------------------------------------------------S---------------
-----------SSS------------SSSSS-S-------------------SSS-S------------S-----S----
-----S-----S--------------------S---------------------------SS---S--SSSS--------
--S------------------S-----------------------------------------------SS---------
-----------------S-------------S---------------------------------S--------------
------S-----------------------------------------S------------S------------------
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----------------------S-SSSSSS----------S------------S--------------------------
-----------------------------------------------S-----S---------S----------------
-------------------------------------------------S------------------------------
-----SS------S-----------------------------------------------------------
>forward_50
------------------------------CATCCGCCGTCGTTGATAGA------------------------------
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>reverse_2403
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--CGAAGATACCAAGGGGCTGG----------------------------------------------------------
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