>input_sequence_78345
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-------------------------------------------------ATGAGATCCCTGATCTCGGTGTCCGCGGCCG
CGCTGGTCCTCGCCGCCGTCCTCGCCGCCGCGCCGCGGCTCGCGGGGGGGCAGGACGAGTGCGGCGCCACCCCGCCGGAC
CAGGAGGCCCTGAAGCTGGTGCCGTGCGTGGCGGCGGGGAAGGACCCGGACTCCAAGCCTTCGGACCGCTGCTGCGCAGC
GGTGAAGGAGATCGGGGAGAGGAGCCCCGCGTGCCTCTGCGCGGTGCTGCTCTCCAAGATCGTGCGCCGGGTCGGGGTCA
AGCCGGAGGTGGCCATCACCATCCCCAAGCGCTGCGACCTGGCCGACCGCCCCATCGGCTACAAGTGCGGCGGTACGTTA
CGTGCTGTTTCATTCATTGCTGGCTTGGTTCTTGGCCTAGGAATTCGTTGGATTATGAAACAGTCGACGACGCGTTGGGT
GAGTAATCACGTGTGATTTTTC----TTTTGCAGACTACACCATGCCCAGCCTGCAGCTGAAGGACTGA-----------
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>chr2D_1_TraesCS2D01G295100
GGTTTGTGTGTGCTTTTTGCTGAATTTTTAGTTCACCATGTGTTGTACTTCCTCTGTTCCTAAATATAAATCTTTTTAAA
CATTTCAAATAGACTGCAACATATTGATGTATGTAGACATATTTTGAATGTAGATTCACTCATTTTGCTTCGTATGTAGT
CACTTGTTAAAATCTTTAGAAAGACTTATATTTGCGAATGGAGAGAGTTTTGTATGGTTTTTGGGCGGTTTCCCTCGTTT
AACTGGACCAACTTGAGTAGTTGGCGTTTCTAAAAGGGAACTCTAATTGGTTGCCATCACTAATGGTTCTGCGTTCACAA
GCCGTAGTATCAACCCTTCATGCCATCACAAACGTGTATGATATTCCCTCCGTTTTTAAATGTAAGTTTTTGTAGAGATT
CCACTAAATAAACTACATACGGAACAAAATGAATGAATTCATACTTAAAATGCATCTATATACATCCGTATGTAGTTTAT
AGTGGAATCTCTATAAAGATTTATATTTAAGAACGAAGGAAGTACAGTACTAGATTGCAGCACGCTACGAAGGAAGTTGT
GCCACACATTTATCGTGAGAAGAAAAAAAGGACGGCGCCACACACGTATCTTGTTCCCTCGAGCGTGCTATGCCTGTGCT
TCTTAACGTAGAGCATAATTCTGACGGATGGTGCATCTGGCAGTGGGACTGCTGTGTCCATCACGAGGTTCGTGCTCCTT
GCATGGTCGGCAATCCATGACCGAAAATGCTTCACACACGACAGTGTTTGGACGATAACTGCACGATCGAGGGATCCAGC
GGCCGCTGCTGGGCTGTGCTCGACATTCTTCGGCTGGATTTAACCGTCGTGCACAAGTCGTCCAAACTTTATCGTCCCCA
TAGCACTGCTCATCCATGACACTGTATATATAAGCAGAAGCTAAGCAGCCGTT------TAGCCACGACAGCGCGCGCGC
ACACAAGAGCCGAGCAAAGGGAGAG---TAAACCACCACGAGCACAACAATGAGATCCCTGATCTCGGTGTCCGCGGCCG
CGCTGGTCCTCGCCGCCGTCCTCGCCGCCGCGCCGCGGCTCGCGGGGGGGCAGGACGAGTGCGGCGCCACCCCGCCGGAC
CAGGAGGCCCTGAAGCTGGTGCCGTGCGTGGCGGCGGGGAAGGACCCGGACTCCAAGCCTTCGGACCGCTGCTGCGCAGC
GGTGAAGGAGATCGGGGAGAGGAGCCCCGCGTGCCTCTGCGCGGTGCTGCTCTCCAAGATCGTGCGCCGGGTCGGGGTCA
AGCCGGAGGTGGCCATCACCATCCCCAAGCGCTGCGACCTGGCCGACCGCCCCATCGGCTACAAGTGCGGCGGTACGTTA
CGTGCTGTTTCATTCATTGCTGGCTTGGTTCTTGGCCTAGGAATTCGTTGGATTATGAAACAGTCGACGACGCGTTGGGT
GAGTAATCACGTGTGATTTTTC----TTTTGCAGACTACACCATGCCCAGCCTGCAGCTGAAGGACTGATCGACGGTTTA
CCA-------GCACCAAAGCGGTTAAATAAGGCTAGTAAGTTCG------------------------------------
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---------------------TGTCTCCGTATGCAGACACCAGCACATTGTATGGAGTGTTAAAAAAATTTACTGTACAT
TGTATGGAGAAAATGATCCCCGTGCTTCAGTGGGCTTTGTTTGTGCCGTGAATCGAGGATGCAAAGAACGACGCCGTTGC
GCCCAACTCTGAAAATGGCAGCATTTTCTGATTGTTGATTGCGTGAAAACAGAATCGAACA---CTTATCGTGTAGCCAG
AAAAGACCATAGATTAT---------------------------------------GTCTGTATACAAACGCCAATAATC
CCGATGGTAACGTGCGGGTATCCGCTAGCAAAGGTAGAAGCTGAAACACTGTCACGCTGGTCGAGGATTGCTCCTGTGTA
TGAAATCGTTCGACAAATT-GGATAACGGACGATATTGTACTGCCCGCAAAAAAAACGGATGATATTGTACTAGTATCAT
ATATATTTCCTCTGTCCAAAATTAATTGACGGATAAATGGCTAAAAATGAATGTATCTAAACGGAGGGAGT---------
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--------TACTAGTAACAAAAGTGTAAAAGCAATGAGCTATTGGCCCTGCGCCT-------------------------
--------ACACGCACTCCGTACATACTCAATAGCACAGCGATGGCTACTTGTCACCTGCCTCCACCTCACGTTTGCATC
AGCACATCAGCCCAAGCCCGCATCGATCTCAGCCGTCCATCGCATAAAACACCCAGTAACATTGTACCACCTGGCGTCCC
CGGTTCCTATCTCTTCCTGCCCCCGCGTCCCCACCCCCTCCTTCGGCGGTCTTCGCTCTGCAGCCTCTGCTGGTTCCACT
CCATCCAATCGTCCGTGCTCCATCCATGGCCGCGCCAGCTCTCCCCCTTGCCAACCACGCCGCTCCCACGGCCACGGCCA
GGTACCTCCACCGCAACCTCCAGTTACTGCAGCCCAAGCGGCAGCTCCCGCCCGGCTTCCTCGCCGCTCGGCCTCTCCGG
CAGCCGCGCCGGGCGCTCTCCGCCGT
>chr2A_209
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------------------------------------------------TTTGTATGGTTTTTGGGCGGTTTCCCTCGTTT
AACTGGACCAACTTGAGTAGTTGGCGTTTCTAAAAGGGAACTCTAATTGGTTGCCATCACTAATGGTTCTGCGTTCACAA
GCCGTAGTATCAACCCTTCATGCCATCACAAATGTCGTGCATGTACGATAGATTGCCATGTACGA---------------
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--------------------------------------------------TAGATTGCCGCACGCTACGAAGGAAGTTGT
GC-ACACATTTATCATGAGAAGAAAAAAAGGACGGCGCCACACACGTATCTTGTTCCCTCCGGTGTGCTATGCATGTGCT
TCTTAACGTAGAGGACAATCCTGACGGATGGTGAATCTGACAGTGGGACTGCTGCGCCCATCACGAGGTTCGTGCTCCTT
ACATGGTCGGCAATCCATGGACACTGTACATAGCAAAAAAAAAAAACCATG-----------------------------
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-----------------GACACTGTGTGTATAAGCAGAAGCTATGCCGCCATTGCCATTTAGCCACGACA--TCGCGCGC
ACACAAGAGCCGAGCAAAGGGAGCG---TAAACCACCACGAGCACAACAATGAGATCCCTGGTCTCGGTGTCCGCGGCCG
CGCTGGTCCTGGCCGCCGTCCTCGCCGCCGCGCCGCGGCTCGCGGGGGGCACGGACGAGTGCGGCGCCACCCCCCCGGAG
CAGGAGGCCCTGAAGCTGATGCCGTGCATAGCGGCGGGGAAGGACCCGGACTCCCAGCCCTCGGACCGCTGCTGCGCGGC
GGTGCAGGAGATCGGGGAGAGCAGCCCCGCGTGCCTCTGCGCGGTGCTGCTCTCCAAGATCGTGCGCCGGGTCGGGGTCA
AGCCGGAGGTGGCCATCACCATCCCCAAGCGCTGCGACCTGGCCGACCGCCCCATCGGCTACAAGTGCGGCGGTACGTTA
CGCGCTGTTTGATTCATCGCTCGCGTGGTTCTTCGCCTAGGAATTCGTTGGATTATGAAACGGTCGACGACGCGTTGGGC
GAGTAATCACGTGTCATTTTTCTTTGTTTTGCAGACTACACCATGCCCAGCCTGCAGCTGAAGGACTGATCGACGGTTTA
CCA-------GCACCAAAGCGGTTAAATAAGGCTAGTAAGTTCG------------------------------------
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---------------------TGTCTCCGTATGCAGACACCAGTACAT-------------------------------T
GTATGGAGTGTT--------------------------------------------------------------------
-----------------------------------------------------------------------------CAA
AAAAGACCATAGATTCTTTTCTTTTTGTGGGATTAAATAAGGCTGAT---GATTCTGTGTGTATACAAATTCCTATAATC
CCAATGGTAACGTGCGGGTATCCGCTAGCAAAGGTAGAAGCTGAAACACTGTCACGCTGATCAAGGCTTACTCCTGTGTA
TGAAATCATTCGACAAATTTGAATAAGGAAATATATTATACTACATCTGTAAAAAAAATATAAGAACGTTTA----TAGA
TCACTAAAGAGAAATACTACA-----------------------------------------------------------
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-----TACTACTAGCAACAAAAGTGTAAAAGCAATGAGATATTGGCCCTGCGCCTGAACGCTTTGGCGACGTGTCAACAC
ACTGTGCTACACGCAGTCCGTACAT----AATGGCACAGCGATGGCTACTTGTCACCTGCCTCCACCTCACGTTTGCATC
AGCACAGCAGCCCAAGCCCGCATCGATCCCAGCCGTCCATCGTGCACAACACCCAGTAACATTGTACCACCTGGCGGCCC
CGATTCCTATCTCTTCCTGCCCCCGCGTCCCCACCCGCTCCTTCGGCGGTCTTCGCTCTGCAGCCTCTGCTGTTTCCACT
CCATCCAATCGTCCGTGCTCCATCCATGGCCGCACCAGCTCTCCCCCTTGCCAACCACGCCGCGCCCACGGCCACGGCCA
GGTACCTCCACCGCAACCACCAGTTGCTGCAGCCCAAGAGGCAGCTCCCGCCCGGCTTCCTCGCCGCTCGGCCTCTCCGG
CAGCCGCGCCGGCCGCTCTCCGCCGT
>chr2B_531
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--------------------------------------------------TAGATTGCCGCACGCTACAAAGGAACTTGT
GTCACGCATTTATCGTGACAAGAAACAAAGGACGGCGCCACACACGTACCTTGTTCCCTGGAGTGTGCTATGCCTGTGCT
TCTTAACGTAGAGCATAATTCTGACGGATGGTGCATCTGGCAGTGGGACTGCTGTGTCCATCACGAGGTTCGTGCTCCTT
GCGTGGTCGGCAATCCATGGACACC-------------------------------------------------------
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-------------------------ATACATAAGCAGAAGCTAAGCAGCCGTT------TAGGCACGACA--GCGCGCGC
ACACAAGAGTCGAGCAAAGGGAGCGTAATAAACCACCACGAGCACAACAATGAGATACCTGGTGTCGGCGTCCGCGGCCG
CGCTGGTCCTGGCCGCCGTCCTCGCCGCCGCGCCGCGGCTCGCGGGGGCCAAGGACGAGTGCGGCGCCACCCCGCCGGAC
CAGGAGGCCCTGAAGCTGGTGCCGTGCGTGGCGGCGGGGAAGGACCCGGACTCCAAGCCTTCGGACCGCTGCTGCGCGGC
GGTGAAGGAGATCGGGGAGAGGAGCCCCGCGTGCCTCTGCGCGGTGCTGCTCTCCAAGATCGTGCGTCGGGTCGGGGTCA
AGCCCGAGGTGGCCATCACCATCCCCAAGCGCTGCGACCTGACCGACCGCCCCATCGGCTACAAGTGCGGCGGTACGTTA
CGTACTGTTTGATTCATTGCTGGCGTGGTTCTTCGCCTAGGAATCCGTTAGATTATGAAACGATCGACGACGCGTTGGGT
GAGTAATCACGTGGGTTTTTTC----TCTTGCAGACTACACCATGCCCAGCCTGCAGCTGAAGGACTGATCGACGGTTCA
CCAGGATCTGGCACCAAAGCGGTTAAATAAGGCTAGTAAGTTCGGGCAAATTTGACAAATTTGACCTATAGACGCAATTA
AATCACAGAATGAACTGTCCGTAGAACTATTTCACGCGGCTGATCTGTGGCGCCTAGCTCTCAGGCGCTGCACTAGTGCA
ATGCCTAGGAGCTAGGCGCTGCACTGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACGACTTAGTAATTTTTTGAT
CACACGTGTGCGACGCTGGCCGTGTAGCGCCTGTCTGTGAGGCGTTGCACAGCGTAGTGTGGCGCCTTCGTGGCGGGCGT
CACACAAAAAGGTCAGCCGCGTGTAGTAGTTTCACTGATAATTCATTCTATGATTTGATTCCGTCTATAGGTCAAATTTG
TTAAATTTGCCAGTAAGTTCGTGTCTCCGTATGCGGACACCAGTACAT-------------------------------T
TGTATGGAGAGAATGATCCCCGTGCTTCAGTGG-CTTTGTTGGTGCCGTGAATCCAGGATGCAAATATCGACGCCGTTGC
GCCGAACTCTGAAAATGGCAGCATTT-CTGATTGTTGATCGCGTGAAAACATAATCGAGCACTCCTTATCATGTAGCCAG
AAAAGACCATAGATTATTTTCTTTTTTTGCGGGAAAAAAAAGAGACCATAGATTCTGTCTGTATACAAACGCCTATAATC
CCGATGGTAACGTGCGGGTATCCGTTACCAAAGGTAGAAGCTGAAACACTGTCACGCTGATGGAGGCTTGCTCCTGTGTA
TGAAATCATTCGACAAATT-GTATAACGGAAGAATATATATATAC------------ATATAAGAGTGTTTAGGTTTAGA
TCACGAAAGAGAAATACTAGTACTCTGGACCGATCACTGGATCCAGGAACAGTGCGTGGCCGAGTTTGCACCGGCGATCC
TTGCCCTCGTGCCCAAACGACGCCGGAAAGCCCGCTGTGTGGCGGACGGCCTGCATCTTCGCTCTTGGACCCAGGACATT
CAAGGGGCTCTTGGCCCCGTGGCGGCTCTTCAGTACTTGGAGCTTTGGCGTCGCGTCCGCGACATCCCCCTCTCCTTCGC
TCCTGACGCCATCCGCTGGCGGTGGACGGCTTCGGGCATATACTCTGCCAAGCCCTGCTATGATGCCCTCTTTCTTGGTT
CCATCTCGGCGCTGCACGCCAAACTGATATGGAAACGTGGGCTCCGCTATGCTACAAGGTCTTCATCTGGCTAGTCACCC
TTGACCGTTGCTGGACCGCGGAGCGCCGCGCCCGCCATGGGCTCTCCCACAACCCTACCTGTGTCCTCTGTGACTAGACC
CTCAAGACGATCGACCACCTCCTAGTCGGCTGCCCGTTCTCCCGCGAGATATGGCACCGCGTGCTCTCGAGCTTCAGGCT
CACTGCGGCGATTCCGACGGCACAGGATAGATTCATCGACTGGTGGAGCGCCGCCACCCTCAACACCCCGCACTCGCTTC
GCAAAGGCTTTGCCTCCCTTGTCGTCCTTACTGCTTGGAGCCTTTGGAGACACCGTAACACCGTGCTCTTCGACTCCGCC
TGCCCATCCGCCGACCTAGTGACGCAAAGCATCCTTGACGAGTCACGGACCTAGGCCCTGGCTGGGGCTAGAGGAGTAGC
CGCGATCACCCAATTTGAGCCCGCCCTAAGCGCGCCTATGCTCTGTTTCCCGGGCTGAGCATCCCGATCCCTTCCTATTC
TTTTTTTTAGACAAACCAAGCTTTTTATTCATAATCCCTTCCTATTCCTAGTTGCACGCTCTCCCGCTGGTGTTGGAGTT
TGTAATTGGGCCTCTGTAACTCTTGCTTTCTACCTATCAATGAAATGATACGCAACTTGCGTATTCGCGTAGACATACTA
GTACGTACTAGTAGCAACAAAAGTGTAAAAGCAATGAGCAACACACCGCG---CT-------------------------
--------ACACGCACTCCGTACATACTCAATGGCACAGCGATGGCTACTTGTCACCTGCCTCCACCTCACGTTTGCATC
AGCACATCAGCCCAAGCCGGCATCGATCTCAGCCGTCCATCGCATACAACACCCAGTAATATTGTACCACCTGGCGGCCC
CGATTCCTATCTCTTCCTGTCACCGCGTCCCCACCCCCTCCTTCGGCGGTCTTCGCTCTGCAGCCTCTGCTGGTTCCGCT
CCATCCAATCGTCCGTGCTCCAGCCATGGCCGCACCAGCTCTCCCCCTTGCCAACCACGCCGCGCCCACGGCCACGGCCA
GGTACCTCCACCGCAACCACCAGTGGCTGCAGCCCAAGAGGC---------CCGGCTTCCTCACCGCTCGGCCTCTCCGG
CAGCCGCGCCGGGCGCTCTCCGCCGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
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--------------------------------S--SSSSS--S-S-SS-SSS--SSS-SS-SSS-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---------------------
---------------------------------------------------------------S----------------
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-------------------SS-SSSSSSSS-SSSS-S-SS-S-SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS-----------------------------------------------------SS--------
-----------------------S-------------------------------------S------------------
----------S--------------------------------------SS-----------------------------
-----------------------------------------------------------------------------S--
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----------S-------------S--------S---------------------------S------------------
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-------------------------------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
----------S----------------------S-------S------------S----------S-S------------
---S----------------------S------------S-----------S------S-----------S---------
-------------------------------------------------------------------------S------
-----------------------------------------------------------S------S-------------
-------S-------------S--------S------S----S--SSSSS------SSS--S-S-S---SSSS--S-SSS
SS-SSSSSSSSSSS-S-S-S-SSSS-S---S---S-S---S-SS-SSSSS-SSSSSSSSSSSS-SSS-SSS---------
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--------------S-----------------------------------------------------------------
--------------------------------S-----------------------------------------------
----------------------------------------------S-----------------------------S---
--S-----------------------------------------------------------------------------
---------------------------------S-----------------------------S----------------
------------------S------S------------S-----------------------------------------
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>forward_746
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------TCGGCAATCCATGACCGAAA------------------------------------------------------
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>reverse_3859
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------------------TCCAGTTACTGCAGCCCAAG------------------------------------------
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