>input_sequence_78341
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--------------------------------------------------------------------------ATATAT
ATAACAACCAACGTTGTCCAAGTCGATCAACTGATATCCGCCTCCGCTCTCTCGCCGGCCGTTCATCAGTCATTCAGTTG
AACAGGTCAGACCGGTCGGTACATACGTAAGCTCAAGCCTCAAGGTCAACTGCAATCCTTCGATCATTCCTACGGTTTGG
TTTGGTACTACAGATATCGACTGTGCGATC----------CGCAGTGGTGCCGTGCGTGCGACGATGAGCTCCACGGGCA
ACGTCGCCGGCGGCGGCAAGAAGGTGTCGTGGCCGGAGGTGGTGGGGCTGCCGGCCGGTGAGGCCAAGGCCGTCATCCTC
AAGGACAAGCCCGACGCCGACGTGATCTTCGTGCCTTTCGGGGCGGGGGTGCAGCAGGACCTCAGCCTAAACCGCGTCCG
TGTCTTCGTCGGCACCATCGCCAGCGTGGTGACCGTCGTCCTCGCCCCAAAGGTTGGCTAGCTAAGCGACCTAGCCAGGG
AGCTATGGTTAGCTCATGAA------------------------------------------------------------
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>chr1A_1_TraesCS1A01G086700
ACTACTCCCTCTGTAAAAAAATATAAAATCATTTAGATCACTAATATAGTGATTTAAATAATCTTATATTTCTTTATAGA
GAGAGTACATTTGGTGCGGCCTTTCATCCATCAGAAGAAATCCACCGGGCACTCCGTTAACTCTGCAAAGATGGTTGTTC
AAACCATGAGCATCTTTGATTCTTATCATCGTGTTGTTACAAGGGATGAGCCTTTGATGAGTATTTCTATAAAAATTTGA
TGCATCGATAAGATTCTCGGTTCTTGACCTGCAAAAGAAAAAAAAGATTCTCGGTTCATAAAAAAAATTGCTTAGGCCAG
CGGGAGATAGTTGACCCGCGAGTGTAGCGCGTTAGTTCGTGTAGCCAGCA-TCTGGTTAGGTGAAGCATGAGTCGGAGCT
GTATACATGTATACGTTA--------------------------------------------------------------
-----------------------------------------CGAGTAGCAAAGCCCTAATTTACTGCCTAGGTTGCTTGG
TTGACTTATATTAAGCCCTAATTCGCTAATTACTTTGCTTGTTGCTCTCTAGGCGCGCAAAGAGCATGGTTAACAATATA
TCCAGCATGTTGCAATGTCATTTAAAGCCACAGCATGTATAGTAGTTGGAAGGAAATACTTCTCTCAGCTTACAAAAACA
TCTTGTATTGTGGGACGAAGGATGTACTATTATATTAGCATATGGCTCATCTTTCATTCTTACAAAGTTTTTGAAGCCCG
TGCTTGGAGCTAAATATTGTTATATTAATTCATCAAAAGCCATAAAAATTC-AAAAGCATCTATTTAGAAGTTTTTATGG
CTTTTTGACCAAAATAAAAAAGCTGTAAAAGCAGAAGCAAAAGCCCAAAGAAACAGAGCATAAGTAGCTTCAACCTTCAA
GGCCTAACTAATTGTCTAGCTTGCTTCTTGCTTGTACTTACCCAACTGCATACGCAAGATTCGACCATTCCACGAACGTC
TTATACATAC-----CACACATACATGCACCTCAGCACCACCCAC----ATCTCCCACTCCAACAAATAGAGGCATATAT
ATAACAACCAACGTTGTCCAAGTCGATCAACTGATATCCGCCTCCGCTCTCTCGCCGGCCGTTCATCAGTCATTCAGTTG
AACAGGTCAGACCGGTCGGTACATACGTAAGCTCAAGCCTCAAGGTCAACTGCAATCCTTCGATCATTCCTACGGTTTGG
TTTGGTACTACAGATATCGACTGTGCGATC----------CGCAGTGGTGCCGTGCGTGCGACGATGAGCTCCACGGGCA
ACGTCGCCGGCGGCGGCAAGAAGGTGTCGTGGCCGGAGGTGGTGGGGCTGCCGGCCGGTGAGGCCAAGGCCGTCATCCTC
AAGGACAAGCCCGACGCCGACGTGATCTTCGTGCCTTTCGGGGCGGGGGTGCAGCAGGACCTCAGCCTAAACCGCGTCCG
TGTCTTCGTCGGCACCATCGCCAGCGTGGTGACCGTCGTCCTCGCCCCAAAGGTTGGCTAGCTAAGCGACCTAGCCAGGG
AGCTATGGTTAGCTCATGAAATAAATTCATAAACTGATATCATCTTGCAAATTGATTTCATTTATGTGTGTTGTCGTATT
CTTTAATGTTCAGTTTTTGAGCTTCGGTTGTAAGACATGTAATGGTGAAACATTGAATTTGCGAGCATGTACGGCCTTGC
GAAAGAAGGCAACAAAAAGTACTCCCTCTGTAAACAATTTGCGAGCGTGTACGGCCAATGGATTCAAAAGTGTTCTTATG
CTCCCGAGCTCAAATGAGCTCGGTGAACAGAAAAATCAAAAAACAATCAAAAATCTGATTTTAGTTTTTGTGACAAACAC
TGATAAAAGTTTTAAGTGCTTGCAAAAATTCGTCATAGAATCACATTCCTGTAAAGTGTGGCAAAAAAACAAATTTAATG
CTCCAAAATGCTTTTGAAAGTAGCATTTTCAGAGAACCAATTTTTTTTTTGCCACGCCTTCTAGGAATGTGATTCCATGA
CAATTTTTTGTAAGCACTTGAAACTTTTGTCAATGTTTGTCAGAAAAAAATCAGATTTTCTTGAATTTTTTATTTATTTT
ACTATTCACTCGAGCTCATCGATAAGAAACTCTGCATCCCTATGGAGTAGCTTTTTTCGCCTATGGAGTAGCTAGCAGGC
TGCATATTTGACATTGCAACAACAGTAAAGCTGGAGTAGCACGCAAGGGCATATCATTATATTTGACCATGATTTTGGGA
AAAAGATAAAACTACTCTTTCAGTTTACATTGCACCCTCGTGTGTCCACTCCAACATTGACCACCGATTTAAATGACGAG
TCATATCGGAAATGCCAAATGGAGATCGAGCTCCATGAAAGCCTTAATTTGAAAAATTCAAATTTCAAGTTTTCAAAAAA
ATCTGAAAAAACACATATATACCTAGACATAATGTACATGTGTGTAAATTTTCAGTCAAAATAAGTTGAAATGAGAGTTA
CATGGAGGTGCTCGTACCCAGCCACTGCTAGGGTTACTTCTGCCTTCCGCCGGCACCAGC
>chr1D_346
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-------------------------AGCGCGTTAGTTCATGTAGCCAGCAATCTGGTTAGGTGAAGCATGAGTCGGAGCT
CTATATATGTACTCCCTCCGTTCGGAATTAATTGTCGCGGAAATGAATGTATCTAGACGTATTTTAGTTTTAGATACATC
CATTTCTGAGACAAGTAATTCCGAACGAAGGGAGTATACGTCGAGTAGCAAAGCCCTAATTTACTGCCTAGGTTGTTTGG
TTGACTTATATTAAGCCCTAATTCGCTAATTACCTTGCTTGTTGCTCTCTAGGCGCGCAAAGAGCATGGTTAACAATATA
TCCAGCATGTTGTAATGTCATTTAAAGCCACAACATGTATACCAGTTGGAAGGAAATACTTTTCTCAGCTTGCAAAAACA
TCTTGTATTATGGGACGAAGGATGTACTACTATATTAGCATATGGCTCATCTTTCATTCTTACAAAGTTTTTGAAGCCCA
TGCTTGAAGCTAAATATTGTTATATTGATTCATTAAAAGTCATAAAAGCCCAAAAAGCACCTATTTAGAAGCTTTTATGG
CTTTTTGACCAAAATGAAAAAGCTGCAAAAGTAGAAGCAAAAGCCCAAACAAACAGGGCCTAAGTAGCTTCA-------A
GGCCTAACTAATTGTCTAGGTTGCTTCTTGCTTGTACTTACCCAACTTCATACGCATGCTTGGATCATTCCCCGAACAAT
ACATTATAGATACCACACATATACATGCACCTCAGCACCGCCCACATCGATCTCCCACTCCTACAAATAGAGGC----AT
ATAACAACCAACGTTGTCCAAGTCCATCAACTGATATTTGCCTGTGCTCTGTCGCCGGCCGTTCATCAGT--------TG
AACAGATCAAACCGGTCGGTACGTAGGTAAG-------CTCAAGGTCAACTGCAATCCTTCGATCATTCCTACAATC---
--TGGTACTCCAGTTATCGATTTAGATCAAACCGGACGGTCGCAGAGGTGCCGTGCGTGCGACGATGAGCTCCACGGG-A
ACGTCGCCGGCGGCGGCAAGAAGGCGTCGTGGCCGGAGGTGGTCGGGCTGCCGGCCGATGAGGC-AAGGCCGTCATCCTC
AAGGACAAGCCCGACGCCGACGTGATCTTCGTGCCTTTCGGGGCGGGGGTGCAGCAGGACCTCAGGCTAAACCGCGTCCG
CGTCTTCGTCGGCACCATCGCCAGCGTGGTGACCGTCGTCCTCGCCCCCAAGGTTGGCTAGGGTG---------------
---TATGGTTAGCTCATGAAATAA----------TGATATCAACTTGCAAATTGATTTCATTTATGTGTGTTGTTGTATT
GTTTAATGTTTATTTTTGAGT-TTCGGTTTTAAGACACGTAATGGTGAAACGTTGAATTTGCGGGCATGTACGGCCCTGC
GAAAGAAGGCAACACAAAGTACTCCCTCCGTGAACAATTTGCGAGCATCTATGGCCTATGGA------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------------S-----------------------------------------
S----S-----SS-SS-S--------------------------------------------------------------
---------------------------------------------------------------------------S----
---------------------------------S----------------------------------------------
------------S-------------------S--------SS------------------S---------S--------
---------S-------------------S-------------------------------------------------S
------S-------------------S------S-----S-------SSS---------S-----------S--------
---------------S---------S-----S-----------------S------S--S------------SSSSSSS-
-------------------S---------------------------S--------S-S--S--S------S-----SSS
SS--SSSSSS---------S-------------------S---------------------S------------SSSS--
------------------------S------------SS----SS-----S-------------------SSSSSSSS--
-----S---S------------S--S-----SSSSSSS-----------------------------------SS-SSSS
SS-------S---S------S-SS-SSSSS---------------S--------------------------------S-
------------------------S------------------S-------------S------S---------------
-----------------------------------------------------------------S--------------
S-----------------------------------------------S------------SSSSSSSSSSSSSSSSSSS
SSS---------------------SSSSSSSSSS--------S-------------------------------S-----
S---------S-S----SSSSS-------S-------S-------------S-----------S------------S---
--------------S-------------S--S--------------S-S--S----S-----SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_342
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--GGAGATAGTTGACCCGCGAG----------------------------------------------------------
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>reverse_2051
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--------------------------------------------------GCCACGCCTTCTAGGAATGT----------
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