>input_sequence_78307
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------------------------------------------------------------ATGAACACCGCCAGCTCCAG
TTCCGCCACACTGAGGTGCGCGGGCAAGCCTGCTAGCTTCGGCGCCGGCTTTGGCCGGAGGAGCGGCCACTGCAACTGCA
GGGTGAAGGCGGCGGCGGCCGCGAGCGCGGGTGTCCGCTCGCCGAGCAGGGGCGACTACTACAAGGTGCTGTCCCTGGAC
CACTCGGCGGACGTGGGCGCGGAGGAGGTCAAGCGCGCGTACCGCCGGCTGGCGCTGCAGTACCACCCGGACGTGTGCCC
GCCGTCGTGCCGGGCCGAGTCCACGGAGCTCTTCGTCGAGCTCCAGCGCGCCTACGAGACGCTGTCCGACCCTGCCACGA
GGGTACAGTACGACGCTGAGCTGAGGACGGGCCGGGCGCCGACGAGGCCGACGGCAGATGGGTTCGCGAGGGATGTGTGG
GAGGCGCAGCTGTCCGTGCTGCGGGCAAGGTCCGAACGGCGGCAGAATGGCAGCAGGTGCAGCGGCCGCCGATTCTAG--
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>chr5D_1_TraesCS5D01G200200
AGAATACAAGTCATCATGAACAGATTACGAGTTTTGTGCCTGGTAATTCGCCTTGGGGTGACCTTT-TTTTGAACCC--G
AGTGACCTAATTCTGGTTACGTGTAACCGTGTAGGTCGA--AAAAATACA-TTTTCTTTTTCTGAAAACGGTCGACTGAA
GACATGTTCACCGCGCCATGTGTCATGTGAATTTCACAAGATAAGACATGAATCCCAACAAAACAAGGGGCCGGGGTG-C
ATTTGACATTGGCCGACCATTCAACTTATACTGCCATCTCACAGCCAGTAGTTTTTTTTAGAGTTGCATTGGTCCCCAAG
ATCCATACGGCGACGATGAAAAATCAGGTGGCGGCCGGCCGGAGGCGGCCGCGAAGCGGGAGTTGGGTGTGAA-CATCGA
GACGAGGGTAGGAAGGAAAGTCAAAATCCGTTTATCGAGCCTAAACGTCGGGCAGGCCTGAGGCTCAGCCCACCTTAAAT
TATGGGTGG-------TGCACACGGCCGGGCGCTTCTTCCATGGTCACCATGACACCATGCATCCAAGCTGATGGCGCGC
ACCTTCCTCGAACTTTCCCGAAGAAACTGACTCTTAAACAGTGG--TGTAAAAAAAATTAACGTTTAAACCTTACCGCCC
GGCCCAGCATGTCCCCTGGCTCCGCAAGGCGCCATTTCACCGGTCCACCACCACCTTGCAAGTTGCACTGCGGCCCGATC
GCCGGCGACGGCGACGTTAATAACCGCGGGCGCCCGTGCAACAAACGCACGCGTACAGCAAACCAACGGCACGCCTCGTT
TGTCTCATCCGCGATCGGCCGGGTCACCCCCAGCTTCCAATCGCCTATATATTATGGGTGGTATCGCCATTCATTCTC--
-CATCACCATCCGCCACAACACAACTCGCTCTGATCACGATCGCCTGACCCACAACACAACTTGCTCTGATCACGATCAC
CTGACCAGCAAGAGATTTCTTGATTTCTTCTTCTTCCTGTGTTTCATCGGCCAGCCATCCATGAACACCGCCAGCTCCAG
TTCCGCCACACTGAGGTGCGCGGGCAAGCCTGCTAGCTTCGGCGCCGGCTTTGGCCGGAGGAGCGGCCACTGCAACTGCA
GGGTGAAGGCGGCGGCGGCCGCGAGCGCGGGTGTCCGCTCGCCGAGCAGGGGCGACTACTACAAGGTGCTGTCCCTGGAC
CACTCGGCGGACGTGGGCGCGGAGGAGGTCAAGCGCGCGTACCGCCGGCTGGCGCTGCAGTACCACCCGGACGTGTGCCC
GCCGTCGTGCCGGGCCGAGTCCACGGAGCTCTTCGTCGAGCTCCAGCGCGCCTACGAGACGCTGTCCGACCCTGCCACGA
GGGTACAGTACGACGCTGAGCTGAGGACGGGCCGGGCGCCGACGAGGCCGACGGCAGATGGGTTCGCGAGGGATGTGTGG
GAGGCGCAGCTGTCCGTGCTGCGGGCAAGGTCCGAACGGCGGCAGAATGGCAGCAGGTGCAGCGGCCGCCGATTCTAGAG
TAGATTTGAACAGAGTGAACATGCCCCAGTCTGGCTGTGGTTTCATTGATTCTTTGACGGTGACATACCCTACTCTGGGG
CGTTAAAACCTGTGTATGCATGTTTATTTGGTGTAGGCTCGGATACTATGTACTGCTCGACTTG-ATTGTAAGTTGTTGT
ACATGCAAAAGTTGGCATTATATTTGTCAAATCAACGTACAGTA---------------TAGAGTGAACATACGACGCAC
TATCGATCAT--GAGGCGTCTAGTTACTTCGTCAATCTCAATATGTTGTGTCC-----------CAGAGGTATTCATAGA
CATATGGTGTGCATGTGTGCATG-CATTCATAGGGGTAAATGTATGTGCATCTATATAAACATCTGCAATTGTACCGTG-
TTAAAAAACACAAGAATTGTAAGGTGGGCTAATTGA--------------------------------------------
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--------TGAATAACCCAAGGGAGTCCACTCTTTTTCAAAAAGTA----------------------------------
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--TCATAGCCAAAATGTTGGCAATCATCCAAGGGAGTATTTGTTTGGATGATTGCCAACATTTTGGCATGTATCCATGCA
GACTTATCATTTCCAATTCATCTTTGTGACAATATTAACCAAATCATAGGCAAGCA-----AAACCTTGACCAAAGTTGT
TTTTTAGCCAAATATTTGATAGGGTGAACATTGGCTCAAACCAAACAGCACCGGAATGCGATCACCTTTGACGGCGCACA
ACTCAGCC--TCCAGCCTCCTTAACACGATTAGGACGGAAGTCAAGCATTGGGCGGCTGCAGGCGCGAGCGGCCTAGCTG
CGTTGCTCGCGGCTCCTAATACAGCTAGTGTTTAGTAGCGTTGTATTGTAACACCGGGTGTGCTTGTAGGTGAGCTTGTA
CAAACTCTTCTTCTATTAACGAATTGAAAGGCAAGACTTCTACGTTTTCTCAAAAAAAAGAC----CATATTATCGCCGC
C-TTCACATTTTCCACCTCTTACTTCAGATCCACTATGGAACACCACAATTCCAACAAATAAAT-----ATAGGAGAATG
GCACCAGCAGGTCG
>chr5B_7
------CAACTCATCATGGACAGATTACAAGTTTTGTGCCTGGTAATTCGCCTTGGGGTGACCTTT-TTTTTTGAACCTG
AGTGACCTAATTCTGGTTAGGTGTAACCGTGTAGGTCGAAAAACAATACA-TTTTCTTTTTCTGAAAGCGGTCGACTGAA
GATGTGTTCACCGCGCCATGTGTCATGTGAATTTCACAAGATAAGACATGAATCCCAACAAAACAAGGGGCTGGGGTGCC
ATTTGACATTGGCTGA---------TTATACTGCCATCTCACAGCTAGTCGTTTTATT-AGAGTTGCATTGGTCCCCAAG
ATCCATGCGGCGACGATGAAAAATCAGGTGGCGGCCGCCCGGAGGCGGCCGCGAAGCGGAGGTT-GGGGTGAACCATCGA
GACGAGGGTAGGAAGGAAAGTC-AAATCCGTTTATCGAGCCTAAACGTCGGGCAGGCCTGAGCCTCAGCCCACCTTAAAG
TATGGGTGGTGCA---TGCACACGGCCGGGCGCTTCTTCCATCGTCACCATGACACCATGCATCCAAGCTGATG------
ACCTTCGTCGAACTTTCCCGAAGAAACTGATTCATAAACAGCGGTCTGAAAAAAGAATTAACGTTTAAACCTTACCGTCC
GGCCCAGCATGTCCCCTGGCTCCGCAAGGCGCCACTTCACCGGTCCACCACCACCTTGCAAGTTGCACTGCGGCTCGATC
GCCGGCGACGGCGACGTTAATAACCGCGGGCGCCCGTGCAACAAACGCACGCGTACAGCAAACCAACGGCACGCCTCGTT
TGTCTCATCCTCGATCGGT---------------TTCCAATCGCCTATATATTATGGGT---ATCTCCGTTCGTTCTCCA
ACATCGCCATCCGCCACAACACAGCTC------------------------------------GCTCTGATCACGATCAC
CTGACCAGCAAGAGGTTTCTTC--TTCCTC---CTCCGCTGTTTCATCAGCTAGCCGTCCATGAACACCGCCAGCTCCAG
TTCCGCCACGCTGAGGTGCGCGGGCAAGCCTGCTAGCTTCGGCGCCGGCTTTGGCCGGAGGAGCGGCCACTGCAACTGCA
GGGTGAAGGCGGCGGCGGCCGCGAGCGCGGGTGTCCGCTCGCCGAGCAGGGGCGACTACTACAAGGTGCTGTCCCTGGAG
CACTCGGCGGACGTGGGCGCGGAGGAGGTCAAGCGCGCGTACCGGCGGCTGGCGCTGCAGTACCACCCAGACGTGTGCCC
TCCGTCGCGCCGGGCCGAGTCCACGGAGCTCTTCGTCGAGCTCCAGCGCGCCTACGAGACGCTGTCCGACCCTGCCACGA
GGGTGCAGTACGACGCTCAGCT---GACCGGCCGGGCGTCGACGAGGCC------AGATGGGTTCGCCAGGGACGTATGG
GAAGCCCAGTTGTCCGTGCTGCGGGAGAGGTCCGAACGGCGGCAGAATGGAAGGAGGTGCAGCGGCCGACGGTTCTAGAC
-----TTGAACGGAGTGAACATACCCCAGTCTGGCTGTGGTTTCATTGATTCTTTGACGGTGACATACCCCAGTCTGGGG
CGTTAAATATTGTGTATGCATGTTTAT-----------------------------------------------------
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>chr5A_22
AGAA---------------------TACGAGTTTTGTGGCTGGTAATTCGCCTTGGGGTGACCTTTGTTTTGAACCT--G
GGTGACCTAATTCTGGTTAGCTGTAGCCGTGTAGGTCGA--CTAAATACATTTTTTTTCTTCTGAAAACGGTCGACTGAA
GTCATGTTCACCGCGCCATGTGTCATGTGAATTTCACAAGATAAGACAT-------------------------------
---------TGGCCGACCGTTCAACTTATACCGCCATCTCACAGCCAGTAGTTTTATCATTTGTTGCATTGGTCCCCAAG
ATCCATACGGCGACGATGAAAAATCAGGCGGCGGCCGGCTCCGGCCGGCCGCGAAGCGGAGGTTGGGGGTGAACCATCGA
GGCGAAGGTAGGAAAGTCAGGCAGGGGCAGCCTC---------------------------GCCTCAGCCCACCTTAAAT
TATGGCTGGTGCACAGTGCACACGGCCGGGCGCTTCTTCGATCGTCACCATGACACCATGCATACAAACTGATGGCGCGC
ACCTTCGTCGAACTTTCCCGAAGAAACTGACGCTTAAACAGCGGCCTGAAAAAAGAATTAACGTTTAAACCTTACCGCCC
GGCCCAGCATGTCCCCCGGCCCCGCAAGGCGCCATTTCACCGGTCCACCACCACCTTGCAAGTTGCACTGCGGCTCCATC
GCCGGCGACGGCGACGTTAATAACCGCGGGCGCCCGTGCAACAAACGCACGCGCACAGC-AACCAACGGCACGCCTCGTT
TGTCTCATCCGCGATCGGC---------------TTCCACTCGCCTATATATTATCGGT---ATCTCCGTTCATTCTCCA
ACATCACCATCCGCCACAGCGCAGCTC------------------------------------GCCCTGATCAAGATCAC
CTGACCAGCAAGACATTTCTTC--TTCTTCCTTCTCCTCTGTTTCACCGGCTAGCCATCCATGAACACCGCCAGCTCCAG
TTCCGCCGCGCTGAGGTGCGCGGGCAAGCCTGCTGGCTTCGGCGCCGGCTTTGGCCGGAGGAGCGGACACTGCAACTGCA
GGGTGAAGGCGGCGGCGGCCGCGAGCGCGGGTGTCCGCTCGCCGAGCAGAGGCGACTACTACAAGGTGCTGTCCCTGGAG
CACTCGGCGGACGTGGGCGCGGAGGAGGTCAAGCGCGCGTACCGCCGGCTGGCGCTGCAGTACCACCCGGACGTGTGCCC
GCCGTCGCGCCGGGCCGAGTCCACGGAGCTCTTCGTCGAGCTCCAGCGCGCCTACGAGACGCTGTCCGACCCTGCCACGA
GGGTGCAGTACGACGCTCAGCTCAGGACGGGCCGGGCGTCGGCGAGGCCGCCGGCAGATGGGTTCGCGAGGGACGTGTGG
GAGGCGCAGCTGTCCGTGCTGCGGGCGAGGTCCGAACGGCGGCAGAATGGCAGCAGGTGCAGCGGCCGCCGGTTCTAGAG
TAGACTTTAACAGAGTGAACATACCCCAGTCTGGCTGTGGTTTCATTGATTCTTTGACGGTGACATACCCCAGTCTGGGG
CGTTAAAACTTGTGTATGCATGTTTATTTGGTGTAGGCTCGGATACTATGTACTGCTCGACTTG-ATTGTAAGTTGTTGT
ACATGCAAAAGTTGGCATTATATTTGTCAAATCAACGTATAATGTAACTTGTAGAGTACTAGAGTGAACATACAACGCCC
TATCCACTACGAGACGCATGTCGTTACTTCGTCAATTCCAAT--GTTGTGCCGGCTCAATATTTCAAAGATACTCATAAA
AATAAGTGTACATCGTA-------------------TAAATGTAAATGCATATGTGTAAACATCTGCAATTGTGTTCTG-
TTAGAAAATACAATAATTGTGAGGTGCGCTAATTGGTGAAGGGAAACACCTACCATCATCCGACGGATCACACTGGCCAC
GTTCATCACCTTCCCTGCATGACACACGTCTAAATGAAAGACCGCATACCATCCTTCATCGAACGCATATCTGCAACAGG
GCTATGTTTTTGAAACAGGGACTATGCTTCTGAAACATATGCAATATTGCAATGGTCTACAATGGGTTTATGTTTTGCAA
CAAAACCTCTGTTGCAGAAATTTTCTACAATAAGACCATAGTTGCAAAAAAAGTCAACAAAACCCGAGTTGAAAAAAAAT
TGCAATGAAAGAGTAGTTCAAGAAAAATCTGCAACAAGACTTGTGTTGCAGAAATAATTCTGCAATAATGCATGTGTTGC
AATGATCAAGGCGCGCTCGGCCGCTCTATGCGGCAGATCTGACGGCTTGCGATCTGGCTGATCTTTTAAAAAAATCACGC
CCCATTGGTGAATGACTCAAGGGAGTCCACTCTATCAAAAAAAATGTCATAGTGGTTTGGACAATTTGGAATGAGCGCAA
CAATAGAATATTTGGTAAAGCTCAATTGATCGTATCTTGGACAAAATCAAAGGCGACGCACTCAACTGGTCTAAAGTGGG
CGCTAAATACCTGAGGTCGTTCTTCACCTACGATCGCTTGTATCTTAGTTTTTTTGCCTTTTTCTTGTTGTTGTTGGGTC
GTCATTGTACTCTAAGACTTTGTATCTCTTTTCTTCTATATTGTCACATGCAGTTCTGTTGCATGGTTCGAAAAAAAAAT
GGTCATAGCCAAAATTTT----------------AGTACTTGTTTGGATGATTGTCAAAATTTTGGCATGTATCCATGCA
GACTTATCATGTCTAATTCGTCTTTGTGACAATATCAGCCAAATCATAGGCAAGCCAAGCCAAACCTTGACCAAAGTTCT
AGC-TAGCCAAATATTTGGTAGGCTGAACATTGGTTCAAATCAAACAGCACCGCAATGCGACCACCTTTGACGGTGCACA
ACTCAGCCTATCCAGCCTCCTTGAAACGATTAGGACGGAAGTCAAGCATTGGGCGACTGCGGGCGCGAGCGGCCTAGCTG
CGTTGCTCGCGGCTCCTGATACAGCTAGTGTTTAGTGACGTTGTGGTGTAACATCAAGTGTGCTCGTAGGTGAGCTTGTA
CAAACTCTTCTTCTATCAACGAATCGAAACGCAAGACTTTTGCGTTTTCTCAATAACAAAGACCATCATATTATCGCCGC
CGTTCACATTTTCCACCTCTTGCTTCGGATCCACTTAGGAACACCACAATTCCAACAAAAGATATAG-------------
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>chr5B_1597
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----------------TGCATGTTTATTTGGTGTAGGCTCGGATACTATGTACTGCTCGACTTGAATTGTAAGTTGTTGT
ACATGCAAAAGTTGTCATTATATTTGTCAAATCAACATATAATGTAACTTGTAGAGTACCAGAGTGAACGTACGT----C
TATCGAATGCCAGGCGTCCATAGTTACTTGGTCAATCTTAAGATGTTGTGCCCGGCCGCTC-------GGTATTCATAGA
CATGGGGTGTGCATGTGTGCATTTCATTTATAGGGGTAAATATATGTGCATACATGTAAACATC---AACTGTACCGTGT
TAAGAAACACACAGAATTGTGAGGTCGGCTAA------------------------------------------------
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----TTGGTGAATGACCCAAGGGAGTCCACTCTTTCAAAAAAAAAG----------------------------------
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------------------------------------------------------------------------------AT
TGTCATAGCAAAAAAATTTAGTAC---------GAGTATTTGTTTGGATGATTGTCAAAATTTTGGCATGTATCCATGCA
GACTTATCATGGATAATTCACCTTTGAGACAATATTAGCCAAATCATGGGCAAGCA-----AAACCTTGACCAAAGTTCT
AGC-TAGCCAAATATTTGTTAGGGTGAACATTGGCTCTAACCAAACAGCACT---ATACGATCATCTTTGATGGCGCACA
ACTCAGCCTATCCAGCCTCCTTGACACGATTAGGACGGAAGTCAAGCACTGGGCTACTGTGGGCGCGAGCGAG-TACCTG
CGTTGCTCCTGGCTGCTGATATGGCTAGTCTTTAGTGGCGTTGTGTTGTAACATCGAGTGTGCTCGTAA-TGAGCTTGTA
CAAACTCTTCTTCTATCAATGAATCAAAACACAAGACTTTTGCGTTTCTCCAAAAATAAAGACCATCATATTACCGCCGC
C-TTCACACTTTTCACCTCTTGCTTCAGA-CCACTTAGGAACACCACAATTCCAACAAGAAAAAAATAGATAGAAGAATG
GCACCAGCAGG---
>SNPs
----SS---S--------S-------------------------------------------------------------
-------------------S------------------------------------------------------------
-----------------------------------------------------------------------S--------
------------------S------------------------------------S--S---------------------
-----------------------------------------------------------SS------S------------
--------------------------------------------------------------S-----------------
------------------------------------------S-------------------------------------
------S----------------------------------S------S-----S-------------------------
--------------------------------------------------------------------------S-----
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-------------------SSSSSSSSSSSSSSS-------------------------SSS---S--S-----------
-----------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
---------------------SSS------S-SS----S------------S----------------------------
---------S----------------------------------------------------------------------
-------------------------------------------------------------------------------S
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-------S------------------------------------------------------------------------
----S------------S----S---------------S-----------S----------------------S------
--------------------------S--------------------------------------------S--------
----S-----------------S-----------------------------------------------S-S-------
---------S----------------------------------------------------------------------
---------------------------------------S-S-S----------------------------------S-
------SS-S----S--S-S------------------------------S---------------S-------------
----S-----------------S-----S----------------------S---S------------------------
---S----S-----------S--------------S--------------------------------------------
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-------------S---------------------SSS-----S-S----------------------------------
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---------------S--SSSS-SSSSSSSSSS---------------------S---S---------------------
----------S--S-----------------------S----------------------------------------S-
SSSS--------------S----------------------------------S--------------------------
----------------------S--------------------------------S----S-------------------
-----------------S------------------S-------S--------S--S-------S---------------
----------------S-------S----S---------S-S--------------S--SSS------------------
---------------------S-------------SS----------------------S---S---------S------
-----------SSS
>forward_923
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-----------------------ACTCGCTCTGATCACGATCG-------------------------------------
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>reverse_3097
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--------------------------------------------------------GGTGTGCTTGTAGGTGAGCT----
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