>input_sequence_78303
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--------------------------------------ATGCCCGGCTCCACCGTGCTGCTGATCGGCGCCTCCATGGCC
GCGCTCCTCGTCATCTCCCTCTTCACCT--TCCTCTGCTCCAACCGGCGCCAGGCGCACCGCGCGCCGCCGTCGCAGTCA
GAGCGGAGCGTCGTTGACG---TCGAGCTCGGCCACGGGTGCGGGGCCACAGGGATCGACGACGCCGTGCTGGCCGCGTA
CACGACCACGGTGTACACCTCGG---TGGCGACGCGACGGGAGGAAGATCATA------TGGCTGCTGCCGAAGCGTTGG
CCGACGGTGACCAGCCGCCCGACGACACGGACA------CG---ACGCACACGACGTGCGCGGTGTGCCTGGCGGAGTAC
GCGGACGGCGACGAGCTCCGGTGGCTGCCCGGCTGCAAGCACGCGTTCCACCGGCTGTGCGTCGACGAGTGGCTCCGGCG
GCGGCCGAGCTGCCCGCTCTGCCGCACGTCGCCTCCCGCCACGCGCGCGCCGCCTGCGGCCACCACCGATGACTCCTGA-
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---------------------------------------
>chr5D_1_TraesCS5D01G036300
TATGGAATAGAGGGAGTACTGTGCAAGGCTGTACTAAACAAGGTTTGCCCGGCTGGAGGGGCGATGAAGGCGGCGCGTCT
TCGGCTCGCTCCAGTGCTTGTAGTCGTCGCTAGGTTGTCCACGAACATGGTTGTCATTTTTATTACCTCTGTTGTTCTTT
ATACTGCCATGATTAAAGATAAATGGATTGAAAGTTTCTAAAAAAAAGGGTTAGAGAATATCCTAAAGGATACCCATTTG
CACCCGTAACAGGAATGCAAACTGACTCTTTAGTTATTCCAGACGAGGATTCTAGTCCATATCCAACTTCAAAGAGTGGA
GACTAAATTGTTAACATAAGAAATCACTTCATATAGTT------------------------------GTTAGTTATACA
TTGAGACT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TAGAAACTATGGATTCATATTGTCAAGTACAAAATTTCGTTTTGTAGCTCGAACTCCTTT
AT-CCTCTTTAATGGGATTTTCAAAAATCAGTTTTCCAAGTCTTAACAAATGCCGGGAAAAAAAGTCCAGATGTCATTTG
ACTGCTGAAAAA-------------------------ACACGTGTGTAAATTTGTATAATGAAG----------------
-------------------------------------------------------------GAGACAACACACAGA----
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-----------------------------------------GTAGTACTACTAGCACATTCCAGAGTCTACAAGGGCAGC
TAGCCAACAGGTTACGAACAGCAGAGAAACTAAGCACACGAA-GCTACGCTAGCTGCAGGC-------------------
---------------------------------------ACGCTACTGGCACGTGAATCATCGACGCATGC----AACAA
GCGATCGTAA-AAGAGTATTACTTTGACGAGAAACTGCGGGTAATTAACTAG---AGTAGTCAAGTAACGTGACGCCTAA
TTAGCTTGCCAATTAGAACGACCACGTTAATTTGGATTTGGACTGAGCTACTACAGTTCCTTGGCAG-------------
---------------TGATGCCAGAGATCTGATTTGATCTCGACCGTCTCGACCGTGACGTGGCCGGCAGCTCGACGCAC
GCACGACACGCACGAACAAATCACAAA-------CCAATCAA---------GTACATAGAAGCTGCATGGCC---AGGTT
GTAGTATATGCTCCTGTGG--------------CCACCATGCCCGGCTCCACCGTGCTGCTGATCGGCGCCTCCATGGCC
GCGCTCCTCGTCATCTCCCTCTTCACCT--TCCTCTGCTCCAACCGGCGCCAGGCGCACCGCGCGCCGCCGTCGCAGTCA
GAGCGGAGCGTCGTTGACG---TCGAGCTCGGCCACGGGTGCGGGGCCACAGGGATCGACGACGCCGTGCTGGCCGCGTA
CACGACCACGGTGTACACCTCGG---TGGCGACGCGACGGGAGGAAGATCATA------TGGCTGCTGCCGAAGCGTTGG
CCGACGGTGACCAGCCGCCCGACGACACGGACA------CG---ACGCACACGACGTGCGCGGTGTGCCTGGCGGAGTAC
GCGGACGGCGACGAGCTCCGGTGGCTGCCCGGCTGCAAGCACGCGTTCCACCGGCTGTGCGTCGACGAGTGGCTCCGGCG
GCGGCCGAGCTGCCCGCTCTGCCGCACGTCGCCTCCCGCCACGCGCGCGCCGCCTGCGGCCACCACCGATGACTCCTGAA
CCGACACGGCGCAAGGTAGCATGCCGATCGGGACCATGCATGCATGCCGTTGTCGTATGGCGGCGAAACCGAAATGCGGC
CTAGTACAATGCCATGTCTCGTACGAACCCAAATGCTGCCGTTGCCATGACAAAGACATGTAGTACGTGGCAGAAGAAAT
GTTCCGTACGAAGCCGCCATGAATGCTCTAGAGCAGAGTCCGTGGGTAGGTCGTCATGCATCGCCGCATCGGCATGTGAT
GTGCCCATGTGAGACCATGTCCCGGTCAGCTAAAACAAGCTTATTAGCTTCGGGAAAATATCTAGTGCTACCAACCTTTA
GGTGCTACCGTGATATAAGCTTCTGGGTCGTCGGATTCTCAGATCTAATGGCCTCAATAACTTTGCAACATTTGCAAAAA
AGCCTATGAGAAGTCCAAAAATTGCGCATAGGTCGAGCAGATCCAACAACTCCCGGATGCCGTCCGATTTAAAAATCTGA
CGACCTAGATGCCCGTATCACGGTAGCATTTAAGCCTCGGTAGCACTAGACATCCTGTCGTACTACCTCCATCCGGATTT
ATTAGTCTTCCTTGTATTTTGTGCCAGATTTTTTTAGAAGAACAGGGAGGCCCCTCCCCGGTTCCATTATCGAATGAAAC
CAAAAGGTTTTTACATCAGCTCACTGAGAGGAGCAGTTCAAAGGAAGACTGCGGCGAAAGGCCAACAAGTTTACATAATC
AAAGCGGCAAAGACACGGACCATAAGCGCCCACACACACTACATGCCTCAAATGCAGATCAGCTCCTGAGAGGCCTTGCG
CGACTTCAGCGGCGGTGCAGTCACCGCTTGAGGGGACCAGGCAGCCACCAGGGTCGAGGTTGGGCTCGACATCGTTGCTG
CTTCAGAGCGCTTCTTGGAGGGGGACGAAAAGCCCACTGCGTCGTCCGAGATCTTCATCTTGTTCCAAGGGGCCACCGGC
GGGGCTTCAGGGTTCTTCAGGATCAGCCACTGATCATCA
>chr5A_203
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AAATAGGGTTACAGAATACCCTAAAGGCTACCCATTTG
CACCCGTAACAGGAATGCAAATTGACTCTTTAGTTATTCCAGACGAGGATCCTGGTCGATATCCAACTTCAAGGA-TGGA
TACTAGATCGTTAACATAAGAAATCACTTCATATAGTGGTCTTTTTTGCGGGGACACTTCATATAGTGGTTAGTTATACA
TTGAGACAATAGGACTTTGCTTTTTATGTTATTATCTGACAATACCCTACCTTGGTAAAAATAATGTATTTAAAAGCATG
TCAACTAGCCAAAAATCCTGTTTGGGGAGGGGGGAACACATATTGTGTCGCAGTTTACTTTCCGATAATAATATAAACAC
ACATTTGTATGTTTAGGAAATAGGAACTACGGATACATATTGTCAAGTACATAATTTCGTTTTGTAGCTCGAACTCCATG
GAGCCTCTTTAATGGGATTTTCAACAGTCAGTTTTTCAAGTCTTAACAAAATCGGAAAAAAGAAGTCCAGATGTCATGTG
GATGTGTTCATTTTTTTGGGGAACGTGGATGAATTCTACACGTGTGTAAGTTTGTATAATGAGTCATTCAATACGTGAGC
TAAACATTCCACGGCAACCCCTTTTGAGTGCTGAAATTCTTTAGCTACGAGCAAATTCCACGAGACAACACACAGG----
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-----------------------------------------GTAGTACTACGAGCAAATTCCAAAGTCTCAA--GGCAGC
TAGCCAACAGGCTACGAACAGAAGAGAAACTACACG--------------------------------------------
---------------------AAAAGGCACCATTATACTAACTT-------CGTGAATCATCGTCGCATGTAC-TAACAA
GCAATCGTAA-GAGAGTATCACTTTGACGAGAAACTGCCAGTAATTAACTAATGTAGTAGTCAAATAACGTGATGCCTAA
TTAGCTTGCCAATTACAGCGACCGCGTTAATTTGGATTTGGACCGAGCTACTATAGTTCCTTGGCAGTGA------GTAT
TTATATGTACGGGGCTGATGCGAGAGATCTGATTTGATCTCGACCGTCTCGACCGTGACTTGGCCG--AGCTCGACGCAC
GCACGG---------ACAAATCATATA-------CC----------------TACATAGAAGCGGCACTCCC---GGGTT
GTAGTATATGCTCCTGTGCTGG------------CACCATGCCGGGCTCCACCGTGCTGCTGATCGGCGCCTCCGTGGCC
GCGCTCCTCGTCATCTCCCTCCTCACCT--TCCTCTGCTCCAACAGGCGCCAGGCGCACCGCGCGCCACCGTCGCTGTCA
CAGCGGAGCGTCGTTGACGACGTCGAGCTCGGCCACGGGTGCGCGGCCGCAGGGATCGACGAGGCCGTCCTGCCCGCGTA
CACGACCACGGTGTACTCCTTGGCGGCGGCCAGGCGACGTGGCGAAGGCCAGA------TGGCTGCTGCCGAACCGT---
---------------CGCCCGACGACACGGACA------CG---ACGCACACGACGTGCGCGGTGTGCCTGGCGGAGTAT
GCGGACGGCGACGAGCTCCGGCGGCTGCCCGGCTGCAAGCACGCGTTCCACCGGCTGTGCGTCGACGAGTGGCTCCGGCG
GCGGCCGAGCTGCCCGCTCTGCCGCACGTCGCCTCCCGCCACGCGCG---CGCCTGCGGCCACCACCGATGACCCCTGAA
CCGCCACGGCGTAAGGTAGCATGCCGATCGGGACCATGCATGCATGCCGTTGCCGTATAGCGGCGAAACCGAAATGC---
------------CATGTCTCGTACGAACCCAAATGCTGCCGTTGCCATGACAAAGGCATGTAGTACGTGGCAGTAGAAAT
GTTCCGTACGAAGCCGCCATGAATGCTCTAGAGCAGAGTCTGTGGGTAGGTCGTCATGCATCGGC-------------AT
GTGCCCATGTGAGACCATGTCCCGGTCAGCTAAAACAAGCTTATTAG---------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>chr5D_557
GCAGACGGCGACGAGCTCTGGCGGCTGCCCGGCTATAAGCACGCGTTCCACCGGCTGTGCGTCGAAGAGTGACTCCAGCG
GCGGCCAAGCTGCCCGCTCTGTCGCACGTCGCCGCCCGCCACGCGCGCCGCCTGACGCCACCACCAATGACTCCTGAACC
GCCACGGCGTTAGGTCGATCGCATGGGGACCATGCAACTTGGGGTTCGCCGCGGCCATGGCCGCCACGGCCTATTCGCTC
GCCTCGATCTGACCATCCGCCAGCCGGCACTGCTCTTGGAGGAACAGGTTGTGCAACTGTTCCTCCTACGCCTGCTGGAA
CACTGACTTGGGCTCCGGTGCAGGCTGCTCCTCCGCCATGGCAGCATTGTAGTGCGTTTGTGCCTGCTTCATGGTGAAGC
CGGCGTGCACAGGCGCAGGCTCCGATGCGGTGTCGTCGGAGCACGTCTCCATCATGGAGGTCTGCTGCAAATTCCACTGC
AAAAATGACGAACGCCTGAAGCAGAAGAGTGATGTTATTGTGCGCAAGATCATTGATACAAGTGTCATTGGTGAAAGTTG
CAGCCACCGATTTATGCAATGGAAATGGCTCCGATGATCTCGATGCTCACGGGTTGTCCAGATCTACAAGCCCCGTTGAT
ATGGGAGAGTTCCGAGCGAAAGCCTAGACCCTACTCTGTCGGTGCTGTCGACGATGGCGCTTTCAGCTGTTGCTTCCCCT
CTTGGAGGCATCGTCATGAAACTCCTCTTTCTCTACGAGGGGCTTGGGCTCTCTGGGTGAAAACATGAGCTCCAAATGGT
TTTAGGAGTGGGTAACGGTGGCGTCTTCGTCCTTTCTCCCATGGGAGACATTGCTTGGAAGAGCTAGATTGTGCTTGGTG
CACATGGTTTTCTCTTGTGTCGGCTTTGGTGAATGCCGAGGCAGCGGCGCCTGATGGCTGATGTGCACCGAGACGGCGGT
CTTGGAAAGTAATGCGTGAAACGGCTCCATGGTATGGGGCGGCGACTCGTAGTTTGCTTGGGTGGCAATCTTGGGCCACT
TGGGTGGCAGGTTTGTCGACTCGGTCGATGCTTCCCAACGGGGGCCGTTGGACGGTATGCCGGGGTGGCGTCCCCAGATG
TGTTGCAGCGTTCGTGGTCTGTGTGTGGTTGTCTTGAGCTGCTTGGGATGCGGGCATCCGTGTCTTGTGGCATTGCAACT
CGGGAGCGAGTGGTGGCCTGTCGGGGCGGCGACCCTGGATGTGGTGCGGCATTCTTGGTCTGCACGTGATTGCCTTGTGC
AGCGTGGGCTGCGGGGAATCCGGGTCGTGCGACATTGCGGCTCGAGTGCGGGCGGTGGCATGTCGGGGCAGCGTCCCCGG
AAAGTGGTGTTGGTGGGCTGCGTAGGGCATTGAATGGCGGATGAAGGTTCGGGCGGTGGACCCGAGATTTCAGCATCAAC
AAGAGCGTTTTACCTTGTGTCGACAATGATGGGGGAGCGATGTCGAAGACACGGTAATGGTTGCGGTATTCGGCTCTTCT
CCGATGTACCCGTGGGATTGCCTCCGTTGGTTTCTTGCCGCGAAGTCGAACCCGAGGTGGCGGGTTACGATGACGAGCAA
CAAGTGGTTCGTTCGGTGATCTTTTGCGGCGTCAGCTGTGCCTAATTCTTCTTCGCGGTTCTTTGTTAGAATTGGAGCTG
TGCTGTCTGGTCGCAGGTGGCCGATACATAGCTCCACGCGGCCTCTGCGGTGTGGGTTGAGTCGACGATCGCTTATGGTG
ATGTCGGAGTCGTTTGCTCAGAGTTTAGGAATGACGACGACGCCTCTAGGGGCAGAGTGCTGACAATGACGCCTGCATGC
TGTCTCGGTGAGGCCCTCTTCTGAGTGATGTGAGTGTAGTATCTTACGTGCGCTGCTCAGCAATTGTGATGGTTTTTCAT
CCGACTTTTCATAATTAACTGGTAATCTTGTTTTCGCTCGATTTTCCTTTATTAACCTATCTAAACTTTTCATTTTTAAT
GTATGTATAATTTCTGCCATTTAAAAAGAATAGTGGATTGTTTCCTACGGAAACGGGAGAAAAAGCAAGAGACCGACGAG
ATGCGAGTAAACGGTCCTTTTCTAGCCATCACATTTCCATTAGTCATACATGCCACGGCAACCCTTCTTGACTGATGAAA
TTCTTTAGCTCCTGGTTTCATTCCACGAGACAACACACGTAGTACCACG-GTAGCAAATTCCAGAGTCTCCAAGGGCAGC
TAGCCAACAGGTTACGAACAGCACATAAACTAATCACACGAAAGCTACGGTGCAGGCACGCTTTCTGGCAAACTTACTCC
TGACACGAAAATTTTGGTCGTAAAAGGCTCTATTATTATACACTACTGACACGTGAATCATCGACGCAAGC----AAGAA
GCAACGTAAATGGGAGTAGTACTTTGACGAGGAGCGGCGGT----------AA----TAGTCAA--ACCGTGATGCCTAA
TAAGCTTGCAGATG-CAACCACCGCGTTAATTTGGATTTGGACCGGGCTAA-----TTCCTTGGCAGTGACCGTGAGTAT
ATACAT-----------ATACCAGAGATCTGATTTGATCTCGACCTTCTCGACCGTGACGTCGCCGGCAGCTCGACGCAC
GCACGC---------ACGG---ACAAA-------CCAATCATAGTAC------ATATAGAAGTGGCACGGCAGCAAGGTT
GCAGTATATGCTCCTGCCG--------------CCAACATGCCAGGCTCCACCGTGCTGCTGATCAGCTGCTCCATCGCC
GCACTTCTCGTCATCTCCCTCTTCACCT--TCCTCTGCTCCAACCGGCGCCAGGCGCACCGCGCGCCGCCGTCGCAGTCA
GAGCGGAGCGTTGTTGACG---TCGAGCTCGGCCACGGGTGCGGGGCCACAGAGATCGACGACGCCGTCCTGGCCGCGTA
CACGACCACGGTGTACTCCT---CAGCGGCGAAGCGACGGGGGGAAGACCAGA------TGGCTGTTGCCGAATTGTCGG
CCGACGGTGACCAGCCGCCCGACGACACGGACA------CGGACACGCACACGACGTGCGCGGTGTGCCTGGCGGAGTAC
GCGGACGGCGACGAGCTCCGCCGGCTGCCCGGCTGCAAGCACGCGTTCCACCGGCTGTGTGTCGACGAGTGGCTCCGGCG
GCGGCCGAGCTGCCCGCTCTGCCGCACATCGCCGCCCGCCACGCGCGCACCGCCTGCGGCCACCACCGATGACTCCTGAA
CCGCCACGGCGTAAGGTAGCATGCCGATCGGGACCATGCATGCATGCCGTTGCCGTATAGCGGCGAAACCGAAATGCGGC
GTAGTACA-GGGCATGTCTAGTTCGAACCCAAATGCTGCCGTTGCCAGGACAATGACATGTAGTACGTGGCAGAAGAAAT
GTTCCGTATGAAGCCGCCATGTATGCTCTAGAGCAGAGTCCGTGCGTAGGTCGTCATGCAT-------------------
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>chrUn_557
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-------------------------------------------------------------GAGACAACAC---------
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-------------------------------------CGTAGTACCACGAGTAGCAAATTCCAGAGTCCCCAAGGGCAGC
TAGCCAACAGGTTACGAACAGCACATAAACTAATCACACGAA-GCTACGCTGCAGGCACGCTTTCTGGCAAACTTACTCC
TGACACGAAAATGTTGGTCGTAAAATGCTCTATTATTATACACCACTGACACGTGAATCATCGACGCAAGC----AACAA
GCAACGTAAATGGGAGTAGTACTTTGACGAGGAGCGGCGGT----------AA----TAGTCAAAC--------------
-------GCAGATG-AAACCACCGCGTTAATTTGGATTTGGACCGGTCTAA-----TTCCTTGGCAGTGA------GTAT
ATACAT-----------ATACCAGAGATCTGATTTGATCTCGACCTTCTCGACCGTGACGTGGCCGGCAGCTCGACGCAC
GCACGC---------ACGG---ACAAA-------CCAATCATAGTAC------ATGTAGAAGTGGCACGCAGCAAAGGTT
GCGGTATATGCTCCTGCCG--------------CCAACATGCCCGGCTCCACTGTGATGCTGATCTCCGGCTCCATGGCC
GCGCTTCTCGTCATCTCCCTCTTCACCT--TCCTCTGCTCCAACCGGCGCCAGACGCACCGCGCGCCGCCGTCGCACTCA
GAGCGGTGCGTCGTTGACG---TCGAGCTCGGCCACGGGTGCGGGGCCACAGGGATGGACGACACCGTCCTGGCCGCATA
CACAACCACGGTGTACTCCT---CCGTGGCGAAGCGACGAGGGGAAGACCAGA------TGGCTGTTGCCGAAGCGTCGG
CCGACGGTGACCAGCCGCCCGACGAC------A------CG------CAGACGACGTGCGCGGTGTGCCTGGCGGAGTAC
GCGGACGCCGACGAGCTCCGCCGGCTGCCCGGCTGCAAGCACGTGTTCCACCGGCTATGTGTCGACGAGTGGCTCCGGCG
GCGGCCGAGCTGCCCGCTCTGCCGCACGTCGCCGCC------------------TGCGGTCACCACCGCTGACTCCTGAA
CCACCATGGCGTCTGCTAACATGTCG----GGGCCGTGCATGCATGCC-------TATAGTGGCGAAACCAAAATGCGGC
ATAGTGCA-TGGCATGTCTCGTACGAACCGAAATGCTGCCGTTGCCATGACAATGACATTTAGTACGTGGCAGAAGAAAT
GTTCTGTACGAAGCCGCCTTGA--------------------------------------------------------AT
GTGCCCATGTGAGACCATGTCCCGGTCAGCTAAAACAAGCTTA-------------------------------------
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>chr5D_683
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---------------------------------------------------CGTGAATCATCGTCGCATGTACGTAACAA
GCAATCATAA-AAGATTATTACTTTGACGAGAAACTGCCGGTAATTAACTAAA----TAGTCAAATAACGTGACGCTTAA
TTAGCTTGCCAATTACAACGACCGTGTTAATTTGGATTTGGAGCGAGCTAG--TAGTTCCTTGGCAGTGA------GTAT
TCATATGTCCGGGGCTGATGCCAGCGATCTGATTTGA---------TCTCGACCGTGACGTTGCCGGCAGCTCGACGCAC
GCACGG---------ACAAATCACAAA-------CCAATCATATACTGTACGTACATAGAAGCGGCACGGCC---AGGTT
GTAGTATATGCTCCATTGG--------------CCACCATGCCCGGCTCCACCGTGCTGCTGATCGCCGCCTCCATGGCC
GCGCTCCTCGTTATCTCCCTCTTCACCT--TCCTCTGCTCCAACCAGCGCCAGGCGCACCGCACGCCGCCGTCGCTCTCA
CAGCGGAGCGTCGTCGACG---TTGAGCTCGGTCATGGGTGTGCGGCCGCAGGGATCGACGAGGCCGTCCTGGCCACGTA
CACGACCACGGTGTACTCCT---CGGCGGCGAGGCGACGGGACGAAGGCCAGA------TGGCTGCTGCCGAAGCGTCGG
CCGACGGTGACCAGCCGCCCGACGACACGGACA------CG------CACACGACGTGCGCGGTGTGCCTGGCTGAGTAC
GC------------------------------------------------------------------------------
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---------------------------------------
>chr5A_851
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---------------TGATGCCAGAGATCTGATTTGATCTCGACCGTCTCGACCGTGACGTGGCCGGCAGCTCGACGCAC
GCACGC---------ACGG---ACAAATCACAAACCAATCATATAC-GTAGGTACATAGAAGCTGCACGGCC---AGGTT
GTAGCAT----------------------------ACCATGCCGGGCTCCACCGTGCTGCTGATCGGCGCCTCCATGGCC
GCGCTCCTCGTCATCTCCCTCTTCACCT--TCCTCTGCTCCAACCGGCGCCAGGCGCACCGCGCGCCGCCGTCGCTGTCA
CAGCGGAGCGTCGTCGACG---TCGAGCTCGGCCACGGGTGCGCGGCCGCAGGCATCGACGAGGCCGTCCTAGCCGCGTA
CACGACCACGGTGTACTCCT---CGGCGGGGAGGCGACGGGACGGACGCCAGA------TGGCTGCTGCCGACGCGTCGG
CCGACGGTGACCAGCCGCCCGACGACACGGACACGGACACG------CACACGACCTGCGCGGTTTGCCTGGCGGAGTAC
GCGGACGGCGACGAGCTCCGGCGGCTGCCCGGCTGCAAGCACGCGTTCCCCCGGCTGTGCGTCGACGAGTGGCTCCGGCG
GCGGCCGAGCTGCCCGCTCTGCCGTACGTCGCCGCC------------------TGCGGCCACCACCGATGACTCCTGAA
CCGCCACGGCGTAAGGTAGCATGTCGATCGGGACCATGAATGCATGCCGTTGCCGTATAGCGGCGAGACCGAAATGCGGC
GAAGTACA-TGGCATGTCTCGTACGAACAATT-----------------------------------------TAGAAAT
GTTCCGTACGAAGCCGCCATGAATGTTGTAGAGCAGAGTCCGTGGGTAGGTCGTCATGCATTGGC-------------AT
GTACCCATGTGAGACCATGTCCCGGTCAGCTAAGACAAGCTTA-------------------------------------
--------------------------------------------------------------------------------
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>chr5D_884
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------------------------------------------------TCGACCGTGACGTGGCCGGCAGCTTGACGCAC
GCACGC---------ACGGACCAACAGCACACATAC--------------------------TGGCACGGCCCGACAGGT
TCCGTTGTACTACTACGATATTGCTGCGAGCGACCACCATGCCCGGCTCCGCCGTGGTGCTGATCGGCGCCTTCGTGGCC
GCGCTTCTTGGCGTCTCCCCTCCACCGTCGTCCTCTGCTCCAACCGGCGCCAGGCGCACCGCGCGTCGCCGTCGCCGTCA
CAGCGGAGCGTCGTCGACC---TCGAGCTCGGCCTGGGGCGGTCGCCGTGCGGGATCGACGAGGCTGTCCTGGCCGCGTA
CCCGACCGCGGTGTACGCGT---CGGCTGCGAGCCGACCGGGCGAAGGCCAGAGCCAGGTGGCTGCTGCCGCCGCGACGG
TCGAAGATGGCCAGGCGCCGGGAGACACGCGCG---------------ACACGACGTGCGCCGTGTGCCTGGCCGAGTAC
GCAGACGGCGACGAGCTCCGGTGGCTGCCGGGGTGCCGGCACGTGTTCCACCGGCCGTGCGTCGACGAATGGCTGCGGCG
GCGGCCCAGCTGCCCGCTCTGCCGCACGTAGCC-----------------------------------------------
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>chrUn_982
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-----ATATGCTCCTTTGG--------------CCACCATGCCCGGCTCCACCGTGCTACTGATCGCCGCCTCCATGGCC
GCGCTCCTCGTCATCTCCCTCTTCACCT--TCCTCTGCTCCAACAGACGCGAGGCGCACCACGCGCCACCGTCGCTATCC
CAGCGGAGCGTCGTCGATG---TCGAGCTCGGTCACGGGTGCGTGGCCACATGGATTGACGAGGCCGTCCTGGCCGCGTA
CACGACCATGGTGTACTCCT---CGGCGGCGAGGCGGCGGGACGAAGGCCAGA------TGGCTGCTGCCGAAGGGTTGG
CCGACGGTGACCAGCCGCCCGATGACACGGACACG------------CACACGACCTGCGTGGTGTGCCTGGCGGAGTAC
GCTGATGGCGACGAGCTCCGGCGGCTGCCCGGCTGTAAGCACGCGTTCCACCGGCTGTGCGTCGACGAGTGGCTCCGGCG
ACGGCCGAGCTGCCCGCTCTGCCGCACGTCGCTGCC------------------TGCGGGCACCACCGATGACTCCTGAA
CCGCCACAGCGTAAGGTAGCATGTCGATCAGGACCATGCATGCATGCCGTTGCCATAT----------------------
--------------------------------------------------------------------------------
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---------------------------------------
>SNPs
SSS-SSSSS--S-SSS-SSS-S-SSS-S-S-SSSSS--SS-S-SS-S--SSSSSSSSS-S-SSSSSS--SSSSSS-SS-S
S----SSSSSSSSSS---SSSSSS-SSSS-SSS-SSSS-----SS-SSS-SSSSSSSSSSSSSSSSS-SSS-SS-SSSSS
SSSSS-S-S-S-SSSSSSSSSS----SSSSS-S-SSS--SSS---S--------------S--------S----------
---------------------S----------------------------S--S---S--------------S--S----
S------------------------------------S------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S-------------------------S--
------------------------S-S-----------------------SS-S-------S---------------S--
SS--SS-SS-SS-------------------------------------S-------------S----------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
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--------------------------------------------------------S------------S----------
---------------------------------S-----------------SSSS---S---------------------
-----------------------------------------S------S-------------------------------
--S------------------------------------------------S------------S---------------
---------------S-------S-------------------S---------S--------------------------
--------------------------------------------------------------------------------
-----SSSSSSSSSS--------------------------S-------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
----------------S---S-----------S---------------S--S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
---S-------S----------------------------------------S-----S---------------------
S-------S--S--------------------------------------------------------------------
---------------------------------------------------------------S-SSSSSSSSSSSSS--
-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_32
------------GGAGTACTGTGCAAGGCTGT------------------------------------------------
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>reverse_3793
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--------------------------------AGCCTCGGTAGCACTAGACA----------------------------
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---------------------------------------
