>input_sequence_78287
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-------ATGAACACCGCCAGCTCCAGTTCCGCCGCGCTGAGGTGCGCGGGCAAGCCTGCTGGCTTCGGCGCCGGCTTTG
GCCGGAGGAGCGGACACTGCAACTGCAGGGTGAAGGCGGCGGCGGCCGCGAGCGCGGGTGTCCGCTCGCCGAGCAGAGGC
GACTACTACAAGGTGCTGTCCCTGGAGCACTCGGCGGACGTGGGCGCGGAGGAGGTCAAGCGCGCGTACCGCCGGCTGGC
GCTGCAGTACCACCCGGACGTGTGCCCGCCGTCGCGCCGGGCCGAGTCCACGGAGCTCTTCGTCGAGCTCCAGCGCGCCT
ACGAGACGCTGTCCGACCCTGCCACGAGGGTGCAGTACGACGCTCAGCTCAGGACGGGCCGGGCGTCGGCGAGGCCGCCG
GCAGATGGGTTCGCGAGGGACGTGTGGGAGGCGCAGCTGTCCGTGCTGCGGGCGAGGTCCGAACGGCGGCAGAATGGCAG
CAGGTGCAGCGGCCGCCGGTTCTAG-------------------------------------------------------
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>chr5A_1_TraesCS5A01G190700
TCTCTCGCTAGCTAGGTGAGTTTAATGCTATAGGACATGCACCTTGGTGTAGAAACCAACTGCTTAGTTCGCCTTGACTA
ACTCTTTTTCAGCATTATACTATAAGTTAAGCAATCATTTTTATCTTCTAGAATACGAGTTTTGTGGCTGGTAATTCGCC
TTGGGGTGACCTTTG-TTTTGAACCTGGGTGACCTAATTCTGGTTAGCTGTAGCCGTGTAGGTCGACTAA--ATACATTT
TTTTTCTTCTGAAAACGGTCGACTGAAGTCATGTTCACCGCGCCATGTGTCATGTGAATTTCACAAGATAAGACAT----
------------------------------------TGGCCGACCGTTCAACTTATACCGCCATCTCACAGCCAGTAGTT
TTATCATTTGTTGCATTGGTCCCCAAGATCCATACGGCGACGATGAAAAATCAGGCGGCGGCCGGCTCCGGCCGGCCGCG
AAGCGGAGGTTGGGGGTGAACCATCGAGGCGAAGGTAGGAAAGTCAGGCAGGGGCAGCCTC-------------------
--------GCCTCAGCCCACCTTAAATTATGGCTGGTGCACAGTGCACACGGCCGGGCGCTTCTTCGATCGTCACCATGA
CACCATGCATACAAACTGATGGCGCGCACCTTCGTCGAACTTTCCCGAAGAAACTGACGCTTAAACAGCGGCCTGAAAAA
AGAATTAACGTTTAAACCTTACCGCCCGGCCCAGCATGTCCCCCGGCCCCGCAAGGCGCCATTTCACCGGTCCACCACCA
CCTTGCAAGTTGCACTGCGGCTCCATCGCCGGCGACGGCGACGTTAATAACCGCGGGCGCCCGTGCAACAAACGCACGCG
CACAGC-AACCAACGGCACGCCTCGTTTGTCTCATCCGCGATCGGC---------------TTCCACTCGCCTATATATT
ATCGGT---ATCTCCGTTCATTCTCCAACATCACCATCCGCCACAGCGCAGCTC--------------------------
----------GCCCTGATCAAGATCACCTGACCAGCAAGACATTTCTTC--TTCTTCCTTCTCCTCTGTTTCACCGGCTA
GCCATCCATGAACACCGCCAGCTCCAGTTCCGCCGCGCTGAGGTGCGCGGGCAAGCCTGCTGGCTTCGGCGCCGGCTTTG
GCCGGAGGAGCGGACACTGCAACTGCAGGGTGAAGGCGGCGGCGGCCGCGAGCGCGGGTGTCCGCTCGCCGAGCAGAGGC
GACTACTACAAGGTGCTGTCCCTGGAGCACTCGGCGGACGTGGGCGCGGAGGAGGTCAAGCGCGCGTACCGCCGGCTGGC
GCTGCAGTACCACCCGGACGTGTGCCCGCCGTCGCGCCGGGCCGAGTCCACGGAGCTCTTCGTCGAGCTCCAGCGCGCCT
ACGAGACGCTGTCCGACCCTGCCACGAGGGTGCAGTACGACGCTCAGCTCAGGACGGGCCGGGCGTCGGCGAGGCCGCCG
GCAGATGGGTTCGCGAGGGACGTGTGGGAGGCGCAGCTGTCCGTGCTGCGGGCGAGGTCCGAACGGCGGCAGAATGGCAG
CAGGTGCAGCGGCCGCCGGTTCTAGAGTAGACTTTAACAGAGTGAACATACCCCAGTCTGGCTGTGGTTTCATTGATTCT
TTGACGGTGACATACCCCAGTCTGGGGCGTTAAAACTTGTGTATGCATGTTTATTTGGTGTAGGCTCGGATACTATGTAC
TGCTCGACTTGATTGTAAGTTGTTGTACATGCAAAAGTTGGCATTATATTTGTCAAATCAACGTATAATGTAACTTGTAG
AGTACTAGAGTGAACATACAACGCCCTATCCACTACGAGACGCATGTCGTTACTTCGTCAATTCCAATGTTGTGCCGGCT
CAATATTTCAAAGATACTCATAAAAATAAGTGTACATCGTATAAATGTAAATGCATATGTGTAAACATCTGCAATTGTGT
TCTGTTAGAAAATACAATAATTGTGAGGTGCGCTAATTGGTGAAGGGAAACACCTACCATCATCCGACGGATCACACTGG
CCACGTTCATCACCTTCCCTGCATGACACACGTCTAAATGAAAGACCGCATACCATCCTTCATCGAACGCATATCTGCAA
CAGGGCTATGTTTTTGAAACAGGGACTATGCTTCTGAAACATATGCAATATTGCAATGGTCTACAATGGGTTTATGTTTT
GCAACAAAACCTCTGTTGCAGAAATTTTCTACAATAAGACCATAGTTGCAAAAAAAGTCAACAAAACCCGAGTTGAAAAA
AAATTGCAATGAAAGAGTAGTTCAAGAAAAATCTGCAACAAGACTTGTGTTGCAGAAATAATTCTGCAATAATGCATGTG
TTGCAATGATCAAGGCGCGCTCGGCCGCTCTATGCGGCAGATCTGACGGCTTGCGATCTGGCTGATCTTTTAAAAAAATC
ACGCCCCATTGGTGAATGACTCAAGGGAGTCCACTCTATCAAAAAAAATGTCATAGTGGTTTGGACAATTTGGAATGAGC
GCAACAATAGAATATTTGGTAAAGCTCAATTGATCGTATCTTGGACAAAATCAAAGGCGACGCAC
>chr5B_130
AGAT----------------------------------------------------------------------------
-----------------------------------------------------TACAAGTTTTGTGCCTGGTAATTCGCC
TTGGGGTGACCTTTTTTTTTGAACCTGAGTGACCTAATTCTGGTTAGGTGTAACCGTGTAGGTCGAAAAACAATACA-TT
TTCTTTTTCTGAAAGCGGTCGACTGAAGATGTGTTCACCGCGCCATGTGTCATGTGAATTTCACAAGATAAGACATGAAT
CCCAACAAAACAAGGGGCTGGGGTGCCATTTGACATTGGCTGA---------TTATACTGCCATCTCACAGCTAGTCGTT
TTATT-AGAGTTGCATTGGTCCCCAAGATCCATGCGGCGACGATGAAAAATCAGGTGGCGGCCGCCCGGAGGCGGCCGCG
AAGCGGAGGTTGGGG-TGAACCATCGAGACGAGGGTAGGAAGGAAAGTC-AAATCCGTTTATCGAGCCTAAACGTCGGGC
AGGCCTGAGCCTCAGCCCACCTTAAAGTATGGGTGGTGCA---TGCACACGGCCGGGCGCTTCTTCCATCGTCACCATGA
CACCATGCATCCAAGCTGATG------ACCTTCGTCGAACTTTCCCGAAGAAACTGATTCATAAACAGCGGTCTGAAAAA
AGAATTAACGTTTAAACCTTACCGTCCGGCCCAGCATGTCCCCTGGCTCCGCAAGGCGCCACTTCACCGGTCCACCACCA
CCTTGCAAGTTGCACTGCGGCTCGATCGCCGGCGACGGCGACGTTAATAACCGCGGGCGCCCGTGCAACAAACGCACGCG
TACAGCAAACCAACGGCACGCCTCGTTTGTCTCATCCTCGATCGGT---------------TTCCAATCGCCTATATATT
ATGGGT---ATCTCCGTTCGTTCTCCAACATCGCCATCCGCCACAACACAGCTC--------------------------
----------GCTCTGATCACGATCACCTGACCAGCAAGAGGTTTCTTC--TTCCTC---CTCCGCTGTTTCATCAGCTA
GCCGTCCATGAACACCGCCAGCTCCAGTTCCGCCACGCTGAGGTGCGCGGGCAAGCCTGCTAGCTTCGGCGCCGGCTTTG
GCCGGAGGAGCGGCCACTGCAACTGCAGGGTGAAGGCGGCGGCGGCCGCGAGCGCGGGTGTCCGCTCGCCGAGCAGGGGC
GACTACTACAAGGTGCTGTCCCTGGAGCACTCGGCGGACGTGGGCGCGGAGGAGGTCAAGCGCGCGTACCGGCGGCTGGC
GCTGCAGTACCACCCAGACGTGTGCCCTCCGTCGCGCCGGGCCGAGTCCACGGAGCTCTTCGTCGAGCTCCAGCGCGCCT
ACGAGACGCTGTCCGACCCTGCCACGAGGGTGCAGTACGACGCTCAGCT---GACCGGCCGGGCGTCGACGAGGCC----
--AGATGGGTTCGCCAGGGACGTATGGGAAGCCCAGTTGTCCGTGCTGCGGGAGAGGTCCGAACGGCGGCAGAATGGAAG
GAGGTGCAGCGGCCGACGGTTCTAGAC-----TTGAACGGAGTGAACATACCCCAGTCTGGCTGTGGTTTCATTGATTCT
TTGACGGTGACATACCCCAGTCTGGGGCGTTAAATATTGTGTATGCATGTTTAT--------------------------
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>chr5D_130
AGAT----------------------------------------------------------------------------
-----------------------------------------------------TACGAGTTTTGTGCCTGGTAATTCGCC
TTGGGGTGACC--TTTTTTTGAACCCGAGTGACCTAATTCTGGTTACGTGTAACCGTGTAGGTCGAAAAA--ATACA-TT
TTCTTTTTCTGAAAACGGTCGACTGAAGACATGTTCACCGCGCCATGTGTCATGTGAATTTCACAAGATAAGACATGAAT
CCCAACAAAACAAGGGGCCGGGGTG-CATTTGACATTGGCCGACCATTCAACTTATACTGCCATCTCACAGCCAGTAGTT
TTTTTTAGAGTTGCATTGGTCCCCAAGATCCATACGGCGACGATGAAAAATCAGGTGGCGGCCGGCCGGAGGCGGCCGCG
AAGCGGGAGTTGGGTGTGAA-CATCGAGACGAGGGTAGGAAGGAAAGTCAAAATCCGTTTATCGAGCCTAAACGTCGGGC
AGGCCTGAGGCTCAGCCCACCTTAAATTATGGGTGG-------TGCACACGGCCGGGCGCTTCTTCCATGGTCACCATGA
CACCATGCATCCAAGCTGATGGCGCGCACCTTCCTCGAACTTTCCCGAAGAAACTGACTCTTAAACAGTGG--TGTAAAA
AAAATTAACGTTTAAACCTTACCGCCCGGCCCAGCATGTCCCCTGGCTCCGCAAGGCGCCATTTCACCGGTCCACCACCA
CCTTGCAAGTTGCACTGCGGCCCGATCGCCGGCGACGGCGACGTTAATAACCGCGGGCGCCCGTGCAACAAACGCACGCG
TACAGCAAACCAACGGCACGCCTCGTTTGTCTCATCCGCGATCGGCCGGGTCACCCCCAGCTTCCAATCGCCTATATATT
ATGGGTGGTATCGCCATTCATTCTC---CATCACCATCCGCCACAACACAACTCGCTCTGATCACGATCGCCTGACCCAC
AACACAACTTGCTCTGATCACGATCACCTGACCAGCAAGAGATTTCTTGATTTCTTCTTCTTCCTGTGTTTCATCGGCCA
GCCATCCATGAACACCGCCAGCTCCAGTTCCGCCACACTGAGGTGCGCGGGCAAGCCTGCTAGCTTCGGCGCCGGCTTTG
GCCGGAGGAGCGGCCACTGCAACTGCAGGGTGAAGGCGGCGGCGGCCGCGAGCGCGGGTGTCCGCTCGCCGAGCAGGGGC
GACTACTACAAGGTGCTGTCCCTGGACCACTCGGCGGACGTGGGCGCGGAGGAGGTCAAGCGCGCGTACCGCCGGCTGGC
GCTGCAGTACCACCCGGACGTGTGCCCGCCGTCGTGCCGGGCCGAGTCCACGGAGCTCTTCGTCGAGCTCCAGCGCGCCT
ACGAGACGCTGTCCGACCCTGCCACGAGGGTACAGTACGACGCTGAGCTGAGGACGGGCCGGGCGCCGACGAGGCCGACG
GCAGATGGGTTCGCGAGGGATGTGTGGGAGGCGCAGCTGTCCGTGCTGCGGGCAAGGTCCGAACGGCGGCAGAATGGCAG
CAGGTGCAGCGGCCGCCGATTCTAGAGTAGATTTGAACAGAGTGAACATGCCCCAGTCTGGCTGTGGTTTCATTGATTCT
TTGACGGTGACATACCCTACTCTGGGGCGTTAAAACCTGTGTATGCATGTTTATTTGGTGTAGGCTCGGATACTATGTAC
TGCTCGACTTGATTGTAAGTTGTTGTACATGCAAAAGTTGGCATTATATTTGTCAAATCAACGTA---------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-------------
--------------S------------S-------------------S----S-------------SS---------S--
--S--S----------------------S---------------------------------------------------
---------------------------------------------S------------S---------------------
----SSSSS----------------------------------------------S----------SSSS-S--------
----------------------------S---S--------S-SS--S--SSSS-S-SS-S-------------------
--------------------------------S-------SSS-----------------------S-------------
----------S---S-------------------------------------------S------------S--------
-------------------------------------------S---S--------------------------------
-----------------------S--------------------------------------------------------
S-----------------------------------------------------------------S-------------
--S------------------------------------------S-S--------------------------------
------------S-------S-------------------S----------------S-S-------------S------
----------------------------------S--------------------------S------------------
-------------S--------------------------------------------------------------S---
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-------------------------------------------------S------------------S--------S--
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-------------------------------S--S---------------------------------------------
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-----------------------------------------------------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_227
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-----------------------------------------------CTGTAGCCGTGTAGGTCGAC-------------
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>reverse_2051
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--------------------------------------------------CACCTACCATCATCCGACGG----------
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