>input_sequence_78263
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ATGGCCGTGAGCGACGAGTGCAAGCTCAAGTTCCAGGAGCTCAAGGCGAAGCG
GAGCTTCCGGTTCATCACGTTCAAGATCAACGAGCAGTCGCAGCAGGTGGTGGTGGACCGGGTGGGGCAGCCCGGCGAGA
CCTACGCCGACTTCACCGCCACCATCCCCGCCGACGAGTGCCGCTACGCCGTCTTCGACTTCGACTTCGTCACCGACGAG
AACTGCCAGAAGAGCAAGATCTTCTTCATCTCCTGGTACGTGACGTGACCCATCCATCCATGCATGCATGGTCTCTCACA
CGCGAGTACGTAGC--------------------TAGTGAACGATCTGTGCCTGTGGTGGC-TGCATGCATGCAGGTCCC
CGGACACGTCCAGGGTGAGGAGCAAGATGCTGTACGCCAGCTCCAAGGACAGGTTCAAGAGGGAGCTGGACGGCTACCAG
GTGGAGCTGCAGGCCACCGAACCCAGCGAGATGACGTTGGACATCGTCAAGGCCAGAGCCCTCTGA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>chr2D_1_TraesCS2D01G408100
GGGAGACTACCAGGAAGACCATACTCTGCATGGTGGAGACGATCTTGAAGATGATTTCATTGATGAAGAAGAGGTGAAAA
CCACCAAAACAATTAAAGCAAAGCAACCTAGCAGCGGCGAGAAGAGTACCAGCTCAAAGTCAAAAGGAAAACAAGCTCCA
AAAGTTGTAAAATTCTTTGGTTAAACAATGCCGCCATTTTTGTAGTGTACGTCGAGAATGATCATCTTCCTGGACAATTC
TTTTTGGAGGAATCCCAGCTGTGTAACTTACAATGCAATGAGAATGTATCTGTCTACACTCCGATGTTGGAAAGATGTCA
TA------------------------------------------------------------------------------
---TAATTTGAAATCTCCGGTTGTTCATCAGTCCTCACTACGTTATGGTTACACAGAATTTGTTATATGACTTATGGCCT
CATGGGGTTCTACGAGCGGGCGATGTGCCTGTGTGTGGCTGCATTGTTGGTTTGTCATCGATTCGTCCAAATCGCAGTTG
GTGCAGCAAGCCCCGAGCAAAAAATAAAATAAAATAAAAATGCTGCTGTGCTGTCGTGGCCAGGGATGG-----------
-------------------------------------AGCTTGGTTACAGGCCAG------------AGCGATGGATGGG
TGGTGTGGA----GCGCCTCTGGATCTCCCATGGCTCTCGCGAACGGACGCGCCAAGGAGGGGACGTGCTTGGTCAACCG
CCCCTCTTCTTCCTCCTCCTAAAACGGCGGCATGCATGGCACCATGCATGCGATGCGAGCCTCAGGCTCCCCTATATTTC
GCCCGGCGCCTCCTCTCCTCCGGGCCTTGAGAATCTCGCCCGCCGCCTGACGCCACCGTCGTCGCGTCCGGCGCTCCGTC
CGTGGAAAGAAGAGAAAACCCATCGTCAGCCATGGTGAGCGCGCGCGCGAGACGCCTGCGGCGGCCCTGGATCGACGACG
ATGGTTCGATTCGATCCTTTTGGTTGGTTGATTG-TTGATAATGAGG-TGCTCTTGTTGTTGGTGTTGTTTGCGTGATTG
CGATGCAAGGCGAACTCGGCGTCGGGCATGGCCGTGAGCGACGAGTGCAAGCTCAAGTTCCAGGAGCTCAAGGCGAAGCG
GAGCTTCCGGTTCATCACGTTCAAGATCAACGAGCAGTCGCAGCAGGTGGTGGTGGACCGGGTGGGGCAGCCCGGCGAGA
CCTACGCCGACTTCACCGCCACCATCCCCGCCGACGAGTGCCGCTACGCCGTCTTCGACTTCGACTTCGTCACCGACGAG
AACTGCCAGAAGAGCAAGATCTTCTTCATCTCCTGGTACGTGACGTGACCCATCCATCCATGCATGCATGGTCTCTCACA
CGCGAGTACGTAGC--------------------TAGTGAACGATCTGTGCCTGTGGTGGC-TGCATGCATGCAGGTCCC
CGGACACGTCCAGGGTGAGGAGCAAGATGCTGTACGCCAGCTCCAAGGACAGGTTCAAGAGGGAGCTGGACGGCTACCAG
GTGGAGCTGCAGGCCACCGAACCCAGCGAGATGACGTTGGACATCGTCAAGGCCAGAGCCCTCTGAACAAATTTCTCATC
GCATCGCTCCTTCCAGGCTCCAAGGCCAGCAGCTGGATCTACACCACGCCCTACGTACCTGCGCCCCCGT---ATCGTAT
GCCGTTTCCCCTCCGTCGTCGGTGTCGGAGCCTCCCCCTCCTTGTAAACTAGACATAGATGCTCTCTCTCGTTGTCTTTC
CCGTTTCCAAGATTTTAGACGGCATGCCC-ATCTTATTT--CCCCTTGTTGCTGAGGTGCGTACTACGTAAATTTGCCCG
TGCTCGTTGTGTAAGCGACTGGCTCCACAC-GGCCGCACGGCACTTATCCACGAAAAGACAAACATTCTGGTGTGTTTTG
CTCCTGGTCTCCTTATGTGCTCCTTCCAAAAGCAGCCCTGATGCTCACACTATCCAAAAGTTTAGACGCATTTGTCTTCT
GCTAGTGATTCTTTTTTAAATATTCCAAAGTTATGGATGCGAGAGTGAAACGTTATATGAAGAAATTAA----ACTATGC
AAGGGCATCTCCAAAGCAGATACTTAAGACATGAATAATTTGCAAGTAATTAAATACAGCAGATCCGGCCCCTCTCGACC
GTGACCGCGTCGCCCCCGCAAGCGACCGGCCGCGCCTCCCCTCTTCCCCACGAGCGTTCCCCCAATCTCTTCCACCTCCC
TGCCGCCGTCGCCGGCGCCCGGCGCGGGCCTGGCCCGGGTGACGTTGGCGGCGGCGGCCCCCGGCCCTTTCCCATCTAGG
GTTTCTCCGGCGCGTGACGGAGCGGCTCCGGGCGGTGTCTTCAGGCGGCGACGGTCCTGCGCGGCGGCGGGGGTTCCTGT
CGCGGGTGGGGGCGAGCTCTGGGCGGCGGGGCGGGTTGGCGACGCCCGCCCGACCCAGATCTGGGCCCTTTGGGCCCCAT
CTAGGCTGGGACGGGCTGGTGACAGGCGTGGCGTCGGCGTGGCCCTCAGGAGGCGGTGGTGGTGCGTCGGGCTGGTGGCG
GGTGGCGGCTCGGCTGCTGGCGTGCAGCAGCGCGGTG
>chr2A_1
GGGAGATTACCAGGAAGACCATACTCTGCATGGTGGAGATGATCTTGAAGATGATTTCATTGATGAAGAAGAGGTGAAAA
CCACCAAAACA---AAAGCAAAGCAACCTAGCAGTGGCGAGAAGAATGCCAGCTCAAAGTCAAAAGGAAAACAGACTCCA
AAAGTTGTAAAATTCTTTGGTTAAACAATGCCGCCATTTTTGTAGCGTATGTCGAGAATGGTCATCTTCCTGGACAATTC
TTTTTGGAGGAATCCCAGCCTTGTAACTTACAATGCAATGAGAATGTATCTGTCTACACTGCGACGTTGGAGAAATGCCA
TA------------------------------------------------------------------------------
---TAATTTGAAATATCTGATCGTCCATCTGTCCTCATTAAGCCGTGGTTACACAGAATTTGTGATATAAT--------T
CATGGGGTTCTACGAGCGGGCGATGTGCCTGTGTCTGGCTGTATTGTTGGTTTGTCATCGATTCGTCCAAATCGCAGTTG
GTGCAGCAAGTCCCGAGCAAAAAAAG---TAAAAAAAAAATGCTGCTGTGCTGTCGTGGGCAGGGATGGAGCCTTTTTTT
TTTATTTTTTATTTTTTTGCGAATCAGGCAGGGATGGAGCTTGGTTACAGGTCAG------------AGCGACGGATGGG
TGGTGTGGAGGCAGCGCCTGTGGATCGCCCATGGCTGTCGCGAACG----CGCCAAGGAGGGGACGTGCTTGGTCAACCG
CCCCTCTTCTTCC---TCCTAAAACGGCGGCATGGCACCATGCATGCATGCGATGCGAGCCCCAGGTTCCCCTATATTTC
GCCCGGCGCCTCCTCTCCTCCGGGCCTTGAGAACCTCGCCCGCCGCCTGACGCCACCGTCGTCGCGTCCGGCGCTCCGTC
CGTGGAAAGAAGAGAAAGCCCATCGTCAGCCATGGTGAGCGCGCGCGCGAGACGCCAGCGGCGGCTTTGGGT---CGATG
ACGGTTCGGTTCGATCCTTCTGGTTGGTTGATTGGTTGATAATGAGGTTGCTCTCGTTGTTGTTGTTGTTTGTGTGATTG
CAATGCAAGGCGAACTCGGCGTCGGGCATGGCCGTGAGCGACGAGTGCAAGCTCAAGTTCCAGGAGCTCAAGGCGAAGCG
GAGCTTCCGGTTCATCACGTTCAAGATCAACGAGCAGACGCAGCAGGTGGTGGTGGACCGGGTGGGGCAGCCGGGCGAGA
CCTACGCCGACTTCACCGCCACCATCCCCGCCGACGAGTGCCGCTACGCCGTCTTCGACTTCGACTTCGTCACCGACGAG
AACTGCCAGAAGAGCAAGATCTTCTTCATCTCCTGGT-----ACGTGACCCATCCATCCATGCATGCATGGTCTCTCACG
CGTGAGCACGCAGC--------------------TAGTGAACGATCTGTGCCTGTGGCTGCATGCATGCATGCAGGTCCC
CGGACACGTCCAGGGTGAGGAGCAAGATGCTGTACGCGAGCTCCAAGGACAGGTTCAAGAGGGAGCTGGACGGCTACCAG
GTGGAGCTGCAGGCCACCGAACCCAGCGAGATGACGTTGGACATCGTCAAGGCCAGAGCCCTCTGAACAAATTTCTCATC
GCATCGCTCCTTGCAGGCTCCAAGGCCAGCAGCTGGATCTACATCACGCCCTACGTACCTGCGCCCCCGTACCATCGTAT
GCCGTTTCCCCTCCGTCGTCGGTGTCGGAGCCTCCCCCTCCTTGTAAACTAGACATAGATGGTCTCTCTCGTTGTCTTTC
CCGTTTCCAAGATTTTAGACGGCATGCCCGATCTTATTTCCCCCCTTGTTGCTGAGGTGCGTACTACGTAAATTTGTCCG
TGCTCGTTGTGTAAGCGACTCGCTCCACACGGGCCGCACGGCACTTATTCACGAAAAGACAAACATTGTGGTGTGTTTTG
CTCCAGGTCTCCTTATGTGCTCGTTCCGAAAGGAGCCCTCATGCTCGCACTATCCAAAAGTTTAGACGCGTTTGTCTTCT
GCTAGTGATTTGAAAAAGAA---TCCAAAGTTATGGATGCGAGAGTGAAACGTTATATGAAGAAATTTAACTTACAATGT
AAGGGCATCTTCAAAGTAGATCCTTAA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>chr2B_1
GGGAGACTACCAGGAAGACCATACTCTGCATGGTGGAGACGATCTTGAAGATGATTTCATTGATGAAGAAGAGGTGAAAA
CCACCAAAACA---AAAGCAAAGCAACCTAGCAGTGGCGAGAAGAATGCCAGCTCAAAGTCAAAAGGAAAACAAGCTCCA
AAAGTTATAAAATTCTTTGGTTAAACAATGCCGCCATTTTTGTAGTGTACGTCGAGAACGATCATCTTCCTGGACAATTT
TGCA---AGGAATCGCAGCTGTGTAACTTATTAAGAGA----ATTTTATCTGTCTACCATGTGATGTTGGGAAGATGTCA
TATACTCCCTTCGTCCGGAAATACTTGTCATTGAAATGGATGTATCCATTTTGATGACAACTAATTCCAGATGGAGGGAG
TACTAATTTGAAATGCCTGATCGTCCATCAATCCTCATTACGATACGGTTGCACAGAATTTGTGATCATAAA-------T
CACGGGGTTGTACGAACGGGCGATGTGCCTGTGTCTGGCTATATCGTTCGTTTGCCGTCGCTTCGTCCAAATCGCAGT-G
TTGCAGCAAGTCACGAGGG--------------AAAAAAATGTTGCTGTGCTGTCGTAGCCAGGGATGG-----------
-------------------------------------AGCTTCGTTACAGGCATTTTCGGAGGCGATAGCGATGGATGGG
TGGTGTGGA----GCGCCTCTGGGTCTCCCATGGCTCTCGCGAACG----CGACAAGGAGGGGACGTGCTTGGTCAACCG
CCCCTCTTCTTCC---TCCTAAAACGGCGGCATGGCACCATGCATGCA---------AGCCTCAGGCTCCCCTATATTTC
GCCCGGCGCCTCCTTTCCTCCGGGCCTTGAGAATCTCGCCCGCCGCCTGACGCCACCGTCGTCGCGTCCGGCGCTCCGT-
---GGAAAGAAGAGAAAACCCACCGTCAGCCATGGTGAGCGCGCGCGCGAGACGCCAGCGGCGGCCTTGGAT---CGACG
ACGGTTCGATTCGATCCTTTTGGTTGGTTGATTGATTGATAATGAGG-CGCTCTGGTTGTTGTTGTTGTTTGTGTGATTG
CAATGCAAGGCGAACTCGGCGTCGGGCATGGCCGTGAGCGACGAGTGCAAGCTCAAGTTCCAGGAGCTCAAGGCGAAGCG
GACCTTCCGGTTCATCACGTTCAAGATCAACGAGCACTCGCAGCAGGTGGTGGTGGACCGGGTGGGGCAACCGGGCGAGA
CCTACGCCGACTTCACCGCCACCATCCCCGCCGACGAGTGCCGCTACGCCGTCTTCGACTTTGACTTCGTCACCGACGAG
AACTGCCAGAAGAGCAAGATCTTCTTCATCTCCTGGT-----ACGTGACCCGTCCATCCATGCAGGCATGGTCTCTCTTT
CTGCAGCCTGCTCTGCACACGTGGCGTGGGTACGTAGTGAACGATCTGTG---GTGGCTGCGTGCGTGCATGCAGGTCCC
CGGACACGTCCAGGGTGAGGAGCAAGATGCTGTACGCGAGCTCCAAGGACAGGTTCAAGAGGGAGCTGGACGGCTACCAG
GTGGAGCTGCAGGCCACCGATCCCAGCGAGATGACATTGGACGTCGTCAAGGCCAGAGCCCTCTGAACAATTTCC-----
-CATCGCTCCTTCCAGGCTCCATGGCCAGCAGCTGGATCTGCATCATGCCCTACGTACCTGCGCCCCCGT---ATCGTAT
GCCGTTTCCCCTCCGTCGTCGGTGTCGGAGTCTCCCCCTCCTTGTAAACTAGACATAGATGGTCTCTCTCGTTGTCTTTC
CCGTTTCCAAGATTTTAGACGGCATGCCG-ATCTTATTTC-CCCCTTGTTGCTGAGGTGCGTACTACGTAAATTTGTCCG
TGCTCGTTGTGTAAGCGACTGGCTCCACACGGGCCACACGGCAATTATTCACGAAAAGACAAACATTGTGGTCTGTTTTG
CTCCTGTTCTCCTTATGTGCTTGTTCCAAAAGAAGCCCTCATGCTGACACTATCCAAAAGTTTAGACGCATTTGTCTTCT
GCTAGTGATTTAATTTTTT---TTCCAAAGTTATGAATGCTAGAGTGAAACATTATATGAAGAAATTAA----ACTATGT
AAGGGCATCTCCAAAGCAGATCCTTAA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>SNPs
--------------------------------------------------------------------------------
-----------SSS--------------------S----------S-S--------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------S--S-S-S--S------------S----S--------------------S----S-SSSSSSSSS-
----------------------------------S------S--------------------------------------
----------S-------------SSSSS-----S---------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------SSSS------------------------------
-------------SSS------------------SSSSSSSS--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S---------S-----SSS-----
-S----------------------------------------------------S-------S---------S-------
-S------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
-------------------------------------SSSSS-------------------------------------S
--S---S---S----------------------------------------------SS---------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
-------------------------------------------------------------S------------------
----------------------------------------------------------------------------S---
------------------------------------------------S------------------S------------
----------------------S---------S------S----------------------------------------
----------SSS----S--SS---------------------------------------------------------S
---------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1122
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GTGTTGTTTGCGTGATTG
CG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>reverse_2392
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CCATCTAGG
GTTTCTCCGGC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
