>input_sequence_78259
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-----------------------------------------------------------------------------ATG
GGCGCGATGCCGATGCCGCCACCGCCGGCCGACCACGCGGCAACGAAGGCGGCGGCGCCGCACAAGATGATGGGGATGAT
GCACATGACCTTCTTCTGGGGCGACCGCGCGGTGGTCCTCTTCCCGGGCTGGCCGGGGGAGCGCGGCGCCGGGATGTACC
TCCTCTGCCTCCTCTTCGTGCTCGCCCTCGCCGCGCTCACCGAGGCCCTCGCCCTGCTCTCGCGCCGCCTCGCCCGCCGC
GGCGAGGACGGCGGCCCGGCCACGGCGGCATCTGCGGCGCTGCTGACGGCGGTGCACGCCGCCAGGATGGGGATGGCCTA
CCTGGTGATGCTGGCCGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCGGCAGTCGCCGGCCACGCCGTGGGGTTCCTCT
TCGCGCGGAGCAGAGTGCGCACCGGCGCGGCGCGCGGGAATGTCACATCCCCTGAGCTCTGTGGCGTCCCGCCGTCGCAC
GCGTCCAAGCCTTAG-----------------------------------------------------------------
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>chr2D_1_TraesCS2D01G294900
CTATAGCTCTGCAGACTGCAGTGTTTGTTGCTTGCACAGGAAAACCCATTAAATACTCCCTGGTGAGTAGATTGAGATTC
CATCAGATGAGAGAGCTTCCAGAGTTGGATCGGTGTCACT---------ACCTGCGCGCGTGACTGGCAGGTTGGGCATG
CTTTTCTCACGCCAACCTAATGCGCACCCCAGCAAAACCACCGGACACCAGTAGGA--------AATTTTGGCAGACGGA
AACCAAAACCACCGGTAGGAGTTGACAATACAGTAGCAGAACCTTAGCTCTACCAAACTATCCTCGCCGCCTCAGATCAG
ATGCTG--------------GGCCAAGCCAATCTGTAGCGGCTACGGCGTACTACAAAACG------GTCTCGATCGAGC
GCGCGCGGCTGAGCAAACGACAAGCAACCTCGACGCTGCGGGGGGTGCCGGTCCCCTCCTCGGCTGTTCAGTGCAGTCAC
GAGACGGACGCTCAGAGCTCCGTGCTCCGCTGCTCCCACCGCTCTGCCCTGCGCTTCTCCTGATTTTAGTAAGTTTCCTC
CACGCCACTGGTCACGTTATATCTGCGCTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGCCGGCGGCATG
GGCGCGATGCCGATGCCGCCACCGCCGGCCGACCACGCGGCAACGAAGGCGGCGGCGCCGCACAAGATGATGGGGATGAT
GCACATGACCTTCTTCTGGGGCGACCGCGCGGTGGTCCTCTTCCCGGGCTGGCCGGGGGAGCGCGGCGCCGGGATGTACC
TCCTCTGCCTCCTCTTCGTGCTCGCCCTCGCCGCGCTCACCGAGGCCCTCGCCCTGCTCTCGCGCCGCCTCGCCCGCCGC
GGCGAGGACGGCGGCCCGGCCACGGCGGCATCTGCGGCGCTGCTGACGGCGGTGCACGCCGCCAGGATGGGGATGGCCTA
CCTGGTGATGCTGGCCGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCGGCAGTCGCCGGCCACGCCGTGGGGTTCCTCT
TCGCGCGGAGCAGAGTGCGCACCGGCGCGGCGCGCGGGAATGTCACATCCCCTGAGCTCTGTGGCGTCCCGCCGTCGCAC
GCGTCCAAGCCTTAGTCAGATTCCTGTGAAAATTGCTTCTGTGATCTTCTTGTACTAGCCCTGCCCTATCACTATGTCAG
ATCCAATGTGTACTGGTACCACTAA-------A----TCCTACTCCTACTCCACAAGTCCAGATACTTGCTGAAACATGT
GTTTACATCTGTCTTATACAGGGCCTAACCAGCGACCAGTAGTGATCTCGTTTTACGAAGGTGTCTATTTTGTTTCTCTC
AACTATTGTCCGTGTTTAGACTCCATCCCCAAATTCCCAAACCGATAAACTCTTCAAACTAAACTTCCGATGCTCACATA
CTTTA--------GTTTTCATTATGTCCACCAGGTAGGAGAAAGAGCTTCCGATGCTCACATAC------TTTTTTTTTT
ACAAAAAAGTTGATCTATCTATTA---------------TATATATTATCTATCTATTACTATATAATTGTACACTAAAA
CTAAGATTTATCAACGGTTAATATTTTAGTAGATGTGAAAGTAATAAACGCACGTAAAAAATAGCAAGTAATGAACGCAA
AAAAAATTAACTCACGCAAAGCAACTCTGC-----------ATATTGGGCAAGGTTAGGGCATTTCCAACGGTGACCCGC
AAATTTTCTCCAGCATCCGTCTGTGGACACGG-TGCGGGAGGATGCCATCCAACCGTAGCCGCATACATCCGGCATTCCT
CATATTTTTCTTAAAGTCCGCACGATCAAATAGCCGCATGCAAAGGGTACAAACGTTCAAATAGCCGCATGCAGCACTAG
TTTAAATTTTAAAAAAAGTTCAAATATTACATTCCAACATTGTTGT----------------------------------
---------------------------------------------------------CTCCTCAAATGTGGCTGGATTCT
GGTCCGGAAGTTAGATAGGATCACCCATGTTCTCAAATTCTAGAGTTGCCGCAACATCGTCACCCTCATCCTCGACGATC
ATGTTGTGCATGATCAAACAACATGCCATCACCTCCCACAAGGTTTTCGGATCC-----------AGGTCCACGAACAAC
TGCAAAACGGGCTTGCAGAACTCCAAATGCCCTCTCGACATCCTTTCTA
>chr2A_1
CTATAGCTCTGCAGACTGCAGTGTTTGTTGCTTGCACAGGAAAACCCATTAAATACTCCCTGGTGAGTAGATTGAGATTC
CATCAAATGAGAGAGCTTCCAGAGTTGGATCGGTGTCACTAGCGACGCCACCTGCGCGCGTGACTGGCAGGTTGGGCATG
CTTTTCTCACGCCAACCTAATGCGCACCCCAGCAAAACCACCGGACACCAGTAGTCGGAGTCGGAATTTTGGCAGACGGA
AACCAATACCACCGGTAGGGGTTGACAATACAGTAGCAGAACCTTAGCTCTACCAAACTATCCTCGCCGCCTCAGATGAG
ATGCTGAGAAAATAATGCTGGGCCGAGCCAATCTGTGGCCGCTACGGCGTACGTACTACTACAAAACGTCTCGATCGAGC
GCGCGCGGCTGAGCAGACGACAAGCAACGGCGAC------------GCCGGTCCCCTCCTCGGTTGCTCAGTGCAATCAC
GAGACGGGCGCTCAGAGCTCCGTGCTCCGCTGCTCCCACCGCGCTGCCCTGCGCTTCTCCTGATTTTAGTAAGTTTCCTC
CGCGCCACCGGTCACGTTATATCTGCGCTACATCCCGCTGCCCCAGCGCCTCCCCTTCCC-TGCTCTGCCCGCCTCGCTA
GGAACCCAAGAAACATCCAGCAATGAGGGACATGAGCGGC----------------------------------------
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-----------------------------------------------------------------GACGCCGGCGGCATG
GGAGCGATGCCGATGCCGCCACCGCCGGCCGACCACGCCGCCACGAAGGCGGCGGCGCCGCACACAATGATGGGGATGAT
GCACATGACCTTCTTCTGGGGCGACCGCGCGGTGGTCCTCTTCCCGGGCTGGCCGGGGGAGCGCGGCGCCGGGATGTACC
TCCTCTGCCTCCTCTTCGTGCTCGCCCTCGCCGCGCTCACAGAGGCCCTCGCCCTGCTCTCGCGCCGCCTCGCCCGCCGC
GGCGAGGACGGCGCCCCGGCCACGGCGGCATCTGCGGCGCTGCTGACGGCGGTGCACGCCGCCAGGATGGGGATGGCCTA
CCTGGTGATGCTGGCCGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCGGCAGTCGCCGGCCACGCCGTCGGGTTCCTCT
TCGCGCGGAGCAGAGTGCGCACAGGCGCGGCGCGCGGGAATGTCACATCCCCTGAGCTCTGTGGCGTCCCGCCGTCGCAC
CCGTCCAAGCCTTAGTCAGATTCCGGTGAAAGTTGCTTCTGTGATCTTCTTGTACTAGCCCGGCCCTATCACTATGTCGG
ATCCAATGTGTACTGGTACCCCTAAATCCTACTACATTCCTACTCCTACTCCACAAGTCCAGATACTTGCTGAAACATGT
GTTTGCATCTGTCTTATACAGCGACTAACCAGCAACCACTAGTGATTTCGTTTTACGAAGGTGTCTATTTTGTTTCTCTC
AACTATTGTCCATGTTTAGACTCCATCCTCGAATTCCCAAACTGATAAACTCTTCAAACTAAACTCCTCCATCAAATTAT
GCGTGCAGTTTTT------ATTATGTCCACGATGTAGGAGGAAGAGCTTCCGATGCTCGCATACGCTA-----TTTTTTT
ACTAAAAGGTTGA-------ATCTATCTAATTTTTTTTCGGGGA--TATCTATCTAT---TATATAATTGTACACTAAAA
CTAAGGTTTATCAACGGCTAATATTTTAGTAGATGTGAAAGTAATGAAGTCAA--AAAAAAAGGCAAGTAATGCACGCAA
AAAAAAACTCAGGCAACATAACTAGCAACTGTGTGTATTTTATATTGGGCAAGGTTAGGGCATCTCCAACTGTGACCCGC
AAA-TTTCCTCCGCATTCGTCCATGGACACGGATGTGAGAGGACGTCATCCAACCGTAGCCGTATACATCCAGTCTTTCT
TAAATAAAAAATCAAGTCTGC-------------------------------ACGATCAAATAGGCGCATGCAGCACTAG
TTTAAATTT-AAAAGAAGTTCAAATATTACATCCCAACATTGTTCTCCCCTTTCGCCGCCCACTGATACTTAATCAGATT
TTCCTTCAGCTGTTCATGAGTTGGTCGATGCCGAATTTGTTGATGCATTTAAATAAACTCCTCAAATGTGGTTGGATTCT
GGTTCGAAAGTT-GATAGGATCACCCATGTTCTCAAATTCTAGAGTTGCCGCGACATCGTCACTCTCATCCTCGACGATC
ATATTGTGCATGATCAAACAACATGTCATCACCTCCCACAAGGTTTCCGGATCCCATTGTTTAGTAGGTCCACGAACAAC
TGCAAAACGGGCTTGCGGAACTCCAAATGACCTCTCGACATTCTTTCTA
>chr2B_1
CTATAGCTCTGCAGACCGCAGTGTTTGTTGCTTGCACAGGAAAACCCATTAAATACTCCCTGGTGAGTAGATTGAGATTC
CATCAGATGAGGGAGCTTCCAGAGTTGGATCGGTGTCACT---------ACCTGCGCGCGTGACTGGCAGGTTGGGCATG
CTTTTCTCACGCCAACCTAATGCGCACCCCAGCAAAACCACCGGACACCAGTAGGA--------AATTTTGGCAGACGGA
AACCAAAACCACCGGTAGGAGTTGACAATACAGTAGCAGAACCTTAGCTCTACCAAACTATCCTCGCCGCCTCAGATCAG
ATGCTG--------------GGCCAAGCCAATCTGTAGCGGCTACGGCGTACTACAAAACG-------TCTCGATCGA--
GCGCGCGGCTGAGCAGGCGACAAGCAACCGCGAC------------GCCGGTCCCCTCCTCGGTTGCCCAGTGCAGTCAC
GAGACGGACGCTCAGAGCTCCGTGCTCCGCTGCTCCCACCGCGCTGCCCTGCGCTTCTCCTGATTTTAGTAAGTTTCCTC
CGCGCCACTGGTCACGTTATATCTGCGCTACATCCCGCTGCCCCAGCGCCTCCCCTTCGCTTGCTCTGCCCGCTTCGCTA
GGAACCCAAGAAACATCTGGCAATGAGGGGCATGAGTGGC----------------------------------------
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-----------------------------------------------------------------GACGCCGGCGGCATG
GGCGCGATGCCGATGTCGCCACCGCCGGCCGACCACGCGGCAACGAAGGCGGCGGCGCCGCACAAGATGATGGGGATGAT
GCACATGACCTTCTTCTGGGGCGACCGCGCGGTGGTCCTCTTCCCGGGCTGGCCGGGGGAGCGCGGCGCCGGGATGTACC
TCCTCTGCCTCCTCTTCGTGCTCGCCCTCGCCGCGCTCACCGAGGCCCTCGCCCTGCTCTCGCGCCGCCTCGCCCGCCGC
GGCGAGGACGGCGGCCCGGCCACGGCGGCATCTGCGGCGCTGCTGACGGCGGTGCACGCCGCCAGGATGGGGATGGCCTA
CCTGGTGATGCTGGCCGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCGGCAGTCGCCGGCCACGCCGTCGGGTTCCTCT
TCGCGCGGCGCAGAGTGCGCACC------GCGCGCGCGAATATCGCATCCCCTGAGCTCTGTGGCGTCCCGCCTTCGCAC
CCGTCCAAGCCTTAGTCAGATTCCGGTGAAAATTGCTTCTGTGATCTTCTTGTACTAGCCCTGCCCTTTCACTATGTCAG
ATCCAATTTGTACTGGTACCCCTAAATCCTAAA----TCCTACTCCTGCTCCATAAGTCCAGATACTTGCTGAAACATGT
GTTTACAAATGTCTTATACAGGGACTAACCAGCAACCACTAGTGATCTCGTTTTACGAAGGTGTCTATTTTGTTTCTCTC
AACTATTGTCCGTGTTTAGACTCCATCCTCAAATTCCCAAACCGATAACCTCTTCAAACTAAACTCC---ATCAAATTAT
GCCGTGCAGTTCTGTTTTCATTATGTCCACGATGTGGGAGGAAGAGCTTCCGATGCTCACATAAGTACGTTTTTTTTCTG
ACAAAAAGGTTGATCTAGCTATCTATCTATTACTAGTACTATATATTATCTATCTAT---TATATAATTGTACACTAAAA
CTAAGATTTATCAACGGTTAATATTTTAGTGCATGTCAAAGTAATAAACGCTCGT-------------------------
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>SNPs
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---------------S-------------S----SSSSSSSSSSSS-----------------S--S-------------
------------------------------------------S-------------------------------------
-S------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
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---------------------------------------------------------------------S----------
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S-----------------------S-------------------------------------------------------
--------------------S-----------------------------------------------------------
-----------------------S---------S----S-----------------------------------------
----------------------------S------------------------------------S-SSSSS-SS-SSSS
SSS-S-------------------------S-S-------S---------------------------------------
-------S---------S----SS---------------------------------SSS--------------------
-------------------------------------------------------------SS----------S------
------SSSSSSSSSS--S-S-S-SSSSSS---------------------------------S------S---------
---S----SS-S----S----SS------------S-S-----S-S----------------S--------S-SS--S--
S-S--SSSSSS-S-----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------S---------------
---------S----S-----------------S-----------S-----------------------------------
-----------------------------------------------------------------------S--------
---S--S-----S---------------------------------------S----------S----------------
--S----------------------S--------------------S---------------------------------
----------------S------------S-----------S-------
>forward_430
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----------GAGCAAACGACAAGCAACCT--------------------------------------------------
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>reverse_2296
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-------------------------------------------------------TTCAAATAGCCGCATGCAGC-----
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