>input_sequence_78255
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---------------ATGGCTTATAAGCTTCCACTGGCAGGAGTTAGGACTTCCAATTTCGAGCGTAGAGAGCTTCCATC
AAACAGCTACCTGGATCTGGGTGGGCCTTATGGAAAATTTGTGCCTTTCATAATCGCGGGAGAAGGGGGCTTTGGGGAGC
ATAAGCAGCTCAACTGGACAAACTTGTTTTTACTAAAC---AAGCTTGGCAGTGACATAGACAGCGATCATGTAGAGGTG
ATCAATCAGATCAAAGTAGAGAGAGATGTTGAAAAGGTAAAAGAGTTGATAAAGCTACTGCCTCGTGAAATTTCTGAGCA
ATTGGAAGGCCACGAGACCCATGAGCAGGTTGAAATCCTGAGATATCTGAGCAGGAACATGGATCAGAGGATGTCCTATC
TCAG----------------------------------------------------------------------------
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------------CACAGAGATCCGGCGTCTAAGGAGTGACCTGGGAGAGGTGATGAAAGGTATCGGAGAGATACGCGGAG
CATTGGATAGGATGGAGCGACAAAATCCTTGCTACCGTCCATGA------------------------------------
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>chr2B_1_TraesCS2B01G066200
CAACGTATATGGTGATAATCATAGGGGGAACGATGTTCCACTGCCATCACTCCCTGCCCGGCAAAGCTTGATATGGTGCT
TGATAATGTTAGTTGCCTCCAAGGTACATTCCACTTTTCTGATGTATGAGATATAGAAAATTATGAAACCCATTGAACTT
AGCATGATTTTGGAAATCCATGTAATTCGGTAAAGGATAAATATACTATTTCTGAGCTTTTATTTTATAATGCCCAAC--
-TTTTAAAAAACTGGATATTAAAAAAAGCAAAGTTTTACAAGACCCGGCGTAAACTGAAAAAGAAAATAAGGTGTAGATT
AACATCTACTAGTTTTAAATCATCTCTGTTGGTCTTATTTCATTCATCAAGTATGGACATTTTAACCGGACAGAGATTGA
TGCCAGCGGTAAAAACCAATAGCCTTGCATGATTCACGTATGAAATTGTCCTATATCCTAGTATATTATTGCTGCGCATG
CTGGTACTGTAGACAAGTTTTT--CCCATGAGATACATGGTTTCTGCCCAGATGCAAGTAAGTTGAAAGTAATGGGGCAC
GTGTTCAGTGTTCTAGCAGC---------------------TTTCCTTTTCTTTAAAGGAAATTTTGACGCCAACGA---
----GCAGTAATATCCTTGCGTGATTCCCGTATGATCTTTGTCCTCTATTGTACAGTACATTATTGCTGCCCATACTGAT
AGTGTACA----------------------ATGCAAGTACGTACAGAGTGAACGTCCACACGTCCTTAGTGTTCTAGCAG
CTTCACCCGTGACTGCCACTTCAATCTGAGCCACGATGACACGATTGTGAGCACTTCTAGCAACTTCACATGTGCCTTGC
ACTCTATAAATAGGAAACCAAGTTCATCCATCCAAGCAGGCCTCAGAAAATAGAAATTCAAATTCCAGCAACATAGACAG
CATCAACATTAGAGGGCGGGTGCAGCAGCAGGAGTTGAGGGTTCTCTTCTCCGAAGGCGCCGAAGTTCTTCAGCTTGGCA
AGTAAGTGATAATCAATGGCTTATAAGCTTCCACTGGCAGGAGTTAGGACTTCCAATTTCGAGCGTAGAGAGCTTCCATC
AAACAGCTACCTGGATCTGGGTGGGCCTTATGGAAAATTTGTGCCTTTCATAATCGCGGGAGAAGGGGGCTTTGGGGAGC
ATAAGCAGCTCAACTGGACAAACTTGTTTTTACTAAAC---AAGCTTGGCAGTGACATAGACAGCGATCATGTAGAGGTG
ATCAATCAGATCAAAGTAGAGAGAGATGTTGAAAAGGTAAAAGAGTTGATAAAGCTACTGCCTCGTGAAATTTCTGAGCA
ATTGGAAGGCCACGAGACCCATGAGCAGGTTGAAATCCTGAGATATCTGAGCAGGAACATGGATCAGAGGATGTCCTATC
TCAG----------------------------------------------------------------------------
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------------CACAGAGATCCGGCGTCTAAGGAGTGACCTGGGAGAGGTGATGAAAGGTATCGGAGAGATACGCGGAG
CATTGGATAGGATGGAGCGACAAAATCCTTGCTACCGTCCATGAACAAACGCAACAAGCCCTGGAGTTAGTGCTCCTAGC
TGCTACGTATTTGCATTTCATACTTTTCTATATTGTACTGTAATGAATAAAATTATGCGCTGCTAGCAGCGTATAATGTT
GTACGAGTCTTGGTCGGCCGAGTTATTGTAGCAACAGGTGCATGTCTGTCC-----GCAGTTTGTTGATCTTGTCAAGTG
TTTGTAATGAATAAAATTATGTGCTTCTTGCTACACGTCATGTTGTCCGAGTCCTCGTCGATCGAGATATTGTAGGAAAC
TGGTAT-GTGTCTGTCTGAAATTACCTGTAACGTGTCATTTATGTAAAGTGTTTGCATTGAAGAGTTATGGATATTGTAT
TGC-GTTATTGTTGTTGCTTCATTTCTCAATGTTCATGTCCTGATGGGGTGAATACAATTCCTTCTTGTTTCCACTAAAA
AATATATGTTTGCATTAAACAGCTATGCATATTGTGAGTTGTTCTCATTTTTATTTCTTTATCGTTGTTCTTGTTCTCAT
GGGGTGAATCTAAATCTAATTTTATCATCCTGTTCTCATTGTTTTTGTGCTGATGGGAAGAATTTAAATCATCCTGTTCG
CCCTAAACAAATATGTTTGCATTGAATATCCATGCATATCATGAGTGTGTTCTCATTTTTATTTCTTTTAAAGTTCTTCT
CGTTCCGATGGGCTGAATGTTACTTCATCCTGTAAAATGGAATCTTGTTTCATTACTTGCTATAGATCTCCACTACTCTG
TGAGATTTTTTAAATAGGAGCCTTAGACCCACTCCGTTAATTAAACATAAGAGAATTACCCTGTTAATTAGTTGAAAACT
AGGTGAAAACCTTGTAAGAGACTACTGGCCCGGCTACCATAACTACTGGAAACGCCCTATACATCGAGTGCCACGGACAC
TCGGCAAAGCGCCAATAACCACTGGCAACACCTTTGCCGAGAGTTGCACTCGGCAAAGGCCACCCGTCGTACACCTCTTA
GGCAAACATGA
>chr6A_45
--------------------------------------------CATCACTCCCTGCTCGGCAAAGCTTGATAAGGTGGT
TAATAATGTTACTTGTGTCGAACGTACATTCCTGTTTTTTTATCTATTAGATACAGAAAATTTTGGAATCCATTAAACTT
AGCATGATTGTGG-AACCCATGTTATTCGGTGAAGGATAAATATA-TATTTCTGACCTTTTGTTTTATAATGCCCATTTT
TTTTTGAAAATCTGGATATTCAAACACAGTTATTAATG---GACCCGGTGTAAACTGAATGAG-AAATAAGGTGTAAATT
AACATCTACTAGTTTTAAACCATCTCTGTAGGTCTTATTCCATTCATCAAGTATCGACATTCTAACCGGCCAGAGATTGA
TGCCAACAGGCAAAACCAATAGCCTTGCGTGATTCACGTATGAAATTGTCCTATATCA---TACATTAATGCTGCCCATA
CTGCTATTGTAGATGAGTGTTTTGCCCATAAGATACATGGTTGCTGCCCAGATGCAAGTAAGTACAAAGTGATGGTGCAC
GTGTTCAGTTTTCTAGCAGCTTACCGTGTGACGTGGCGCGTTTTCCTTTTCTTTAAATGAAAATTTGACGCCAACGTGTA
ATACATACCAATAGCCTTGCGTGATTCACGTATGACCATGTCCCCTATT------GTACATTATTGCTGCCCATACTGAT
ACTGTACACGATTGTTGCCCATAATAATACATGCAAGTACGTACAAAATGATGGTGCACACGTACTCAGTGTTCCAGCAG
CTTCACCCGTGACTGCCACCTCAACCAGAGCCATGATGGCACGATTGCGAGGATAAGGGCCTT----------------C
ACTCTATAAATAGGACATCAAGTTGATCTATCCAAGCATGCGTCAGCAAATAGAAGTTCCAGTTCCAACTCAACAGACAC
------CATTAGAGGGAGGGTGCAGCAGCAGGAGTTGAGGGTCCAAAGGCA--------CCGGATTTCTTCAGCTTCGAA
AGTAAGTGATAATCAATGTCT---AGGCTTCCACTGGCAGGAGTTAGGACTTCCAATTTCGAGCCTAGAGAGCTTCCATC
AAACAGCTACCTGAATCTGGGCGGGCCTTATGGAAAATTTGTGCCTTTCATAATCGCGGGAGAAGGGGGCTTTGGGGAGC
ATAAGCAGCTCAACTGGACAAACTTGTTTTTACTGAAC---AAGCTTGGCAGTGACATAGACAGGGATCATCAAGAGGTG
ATCGATCAGATAAAGGCAGAGAAAGATGTTGAAAAGATAAAAGAGTTGATAGAGCGACTGCCTCGTGAAATTGCTGAGCA
CTTGGAAGGCCATGAGACCCATGAACAGGTTGAAATCCTGGCAGATCTGAGCAGGAACATGGATCAGAAGATGTCTTATC
TCAG----------------------------------------------------------------------------
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------------CAGAGAGATCCGGCATCTAAGGAGTGACCTGGGACAGATGATGCAAGGTATCGGAGAGATACGCGAAG
CATTGGCTAGGATGGAGCGCCAGAATCCTTGCTTCCGTCCATGAACAAATGCAACAAGCCCTGGAGCAACTGCACCTGGC
AGTTTCGTATTTGCATTTCGTACTTGTCTATATTGTGTTGTAATGAATAAAATTATGCGCTCTTTGCAGCGTATAATGTT
GTACGAGTCTGAGTCGATCGAGTTTTATTAGCAACATGTGCATGTCTGTACTGTCTGCAGTTGGTTGTTCTTGTCAAGGG
TTTGTAATGAATAAAATTA-------------------------------------------------------------
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>chr6D_323
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-----CTACTAGTTTTAAGCCATCTGTGTTGATCTTATTCCATTCATCAAGTATCAACATTCTAACCGGCTAGAGATTGA
CGCCAGCAGGAAAAACCAATAGGCTTGCGTGATTCATGTATGAAATTGTCCTATATCGGAGTATATTATTGTTGCGCATA
CTGGTACTGTAGATTAGTTCTG--CCCATGACATACATGGTTGCTGCCCAGATGCAAGCAAGTACAAAGTAATGGGGCGC
GTGTTCAATGTTCTAGCAGCATGCCGTGTGACGTGGTGCGTTTTCCTTTTCTCTAAAGGATAATTTGATGCCAAC-----
--ACGTAGTAATATCCTTGTGTAAATTATTGAT-------------------------CATTATTGCTGCCCATACTGAT
AGTGTACATGGTTCTTGCGCAATAT-ATACATGCAAGTACGTACAAAGTGAAGGTGCACACGTCCTTAGTGTTCTAGCAG
CTTCACCCGTGACTGCCACTTCAATCAGAGCCATGATGGCTCGATTGTGAGCACTTCTAGCAACTTCACATGTGGCTTGC
ACTCTATAAATAGGACATCAAGTTCATCCATCCAAGCATGCCTCAGAAAATAGAAATTCCAATTCGAGCTCCATAGACAC
CATTAGCATTAGAGGGAGGGTGCAGCAGCAGGAGTTGAGGGTTCTCTTCTCCAAAGGCGCCGAAGTTCTTCAGCTTGGCA
AGTAAGTGATAATCAATGGCTTACAGGCTTCCACTGGCAGGAGTTAGGACTTCCAATTATGAGGCTAGAGAGCTTCCATC
AAACAGCTACCTGGATCTGGGTGGGCCTTATGGAAAATTTGTGCCTTTCATAATCGCGGGAGAAGGGGGCTTTGGGGAGC
ATAAGCAGCTCAACTGGACAAACTTGTTTTTACTGAAC---AAGCTTGGCAGTGACATAGACAGGGATCATCAAGAGGTG
ATCGATCAGATAAAGGCAGAGAAAGATGTTGAAAAGATAAAAGAGTTGATAGAGCGACTGCCTCGTGAAATTGCTGAGCA
TTTGGAAGGCCATGAGACCCATGAACAGGTCGAAATCCTGGCAGATCTGAGCAGGAACATGGATCAGACGATGTCTTATC
TCAG----------------------------------------------------------------------------
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------------CAGAGAGATCCGGCATCTAAGGAGTGACCTGGGACAGGTGATGCAAGGTATCGGAGAGATACGCGAAG
CATTGGCTAGGATGGAGCGCCAGAATCCTTGCTTCCGTCCATGAACAAATGCAACAAGCCCTGGAGCAAGTGCACCTGGC
AGTTTCGTATTTGCATTTCGTACTTTTCTATATTGTGTTGTAATGAATAAAATTATGCGCTCCTTGCAGCGTATAATGTT
GTACGAGTCTGAGTCGATCGAGTTTTATTAGCTACATGTGCATGTCTGTACTATCTGCAGTTGGTTGTTCTTGTCAAGGG
TTTGTAATGAATAAAATTATGTGCAGCTGGCTGCACATAATGTTGTCTAAGTC---------------------------
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>chr6D_686
ATA-----------------------------------------------------------------------------
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-----------------------AT-ATACATGCAAGTACGTACAGAGTGAAGGTGCACACGCCATTAGTGCTCTAGCAG
CTTCACCGGTGACTGCCATTTCAATCAGAGCCATGCTGGCACGATTGTGAGCACTTCTAGCAACTTCACATGTGGCTTGC
ACTCTATAAATAAGACACCAAGTTCATCCATCCAAGCATGCCTCAGAAAATATAAATTCAAATTTCAGCTCCATAGACAC
CATTAGCA----------------------GGAGTTGAGGGTTCTCTTCTCCAAAGGCGCCGAAGTTCTTCAGCTTGGCA
AGTAAGTGATAATCAATGGCTTACAGGCTTCCACTGGCAGGAGTTAGGACTTCCAATTATGAGGCTAGAGAGCTTCCATC
AAACAGCTACCTGGATCTGGGTGGGCCTTATGGAAAATTTGTGCCTTTCATAATCGCGGGAGAAGGGGGCTTTGGGGAGC
ATAAGCAGCTCAACTGGACAAACTTGTTTTTACTAATTAAAAAGCTTGGCAGTGACATAGACAGCGATCATGTAGAGGTG
ATCAATCTGATCAAACTTGTTTTTACTAATC--AAGATAAAAGAGTTGATAAAGCGACTGCCCCGTGAAATTTCCGAGCA
ATTGGAAGGCCTCGAGACCCATGAACAGGTTGAAATCCTGACAGGTATGAGTAGGAACATGGATCGGAGGATGTCCTATC
TCACCCAATGTTTAAATAGCGGGCTATGGCATATAGCGGCAACCCTTAAAAACAGCTATAGCTGGGCTATAGCGAGGCTA
TGGCGGCAAATTGTACATGAAATCATTTAGCGGTAACATGCTCAAACAGCTATAGTGGGGCTATAGCTGGATATTTGAAA
ATATGATCTCACCACAGAGATCCGGCGTCTAAGAAGTGACCTGGGAGAGGTGATGAAAGGTATCGGAGAAATACGCGGAG
CATTGGATAGGATGGAGCGACAAAATCCTTGCTACCATCCATGAACAAATGCAACAAGCCCCGGAGTTTGTGCTCCTGGC
AGCTACGTATTTGGGTATCGTACTTTTCTATATTGTATTGTAATGACTAAAATTATGCGCTCCCTGCAGCGTATAATGTT
GTACGAGTCTGCGTCGGTCGAGTT--------------------------------------------------------
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>chr6A_740
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--------------------------------------------------------------------------TAGCAT
CTTCACCCGTGACTGCCACCTCAATCAGAGCCATGCTGGCACGATTGTGAGCACTTCTAGCAACTTCACATGTGGCTTGC
ACTCTATAAATAGGACATCAAGTTCATCCATCCAAGTATGCCTCAGAAAATAGAAATTCCAATTCGAGCTCCATAGACAC
CATTAGCATTAGAGGGAGGGTGCAGCAGCAGGATTCGAGGGTTCTCTTCTCCAAAGGCGCCGAAGTTCTTCAGCTTGGCA
AGTAAGTGATAATCAATGGCTTACAGGCTTCCACTGGCAGGAGTTAGGACTTCCAATTATGAGGCTAGAGAGCTTCCATC
AAACAGCTACCTGAATCTGGGTGGGCCTTATGGAAAATTTGTGCCTTTCATAATCGCGGGAGAAGGTGGCTTTGGGGAGC
ATAAGCAGCTCAACTGGACAAACTTGTTTTTACTAAAC---AAGCTTGGCAGTGACATAGACAGCGATCATGTAGAGGTG
ATCAATCAGATCAAAGTAGAGAAAGATGTTGAAAAGATAAAAGAGTTGATAAAGCGACTGCCCCGTGAAATTTCCGAGCA
ATTGGAAGGCCACGAGACCCATGAACAGGTTAAAATCCTGACAGGTCTGAGTAGGAACATGGATCAGAGGATGTCCTG--
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------TCTCACAACAGAGATGCGGCGTCTAAGAAGTGATCTGGGAGAGGTGATGAAAGGTATCGGAGAGATACGCGGAG
CATTGGATAGGATGGAGCGACAAAATCCTTGCTACCGTCCAGGAACAAATGCAACAAGCCCTGGAGTTTGTACTCCAGGC
AGCTACGTATTTGGGTATCGTATTTTTCTATATTGTATTGTAATGAATAAAATTATGCGCTCCTTGCAGCGTATAATGTT
GTACGAGTCTGCGTCGGTCGAGTTTTTTTAGCAATAAGTGCATGTCTGTCC-----GCAGTTTGTTGTTCTTGTCAAGTG
TTTGTAATGAATAAAATTATGTGCTTCTTGCCGCACATAATGTTGTCCAAGTCCTAGTCGATCGAGTTATTGTAGGCAAC
TTGGTTCGTGGCTGTCTGCAATTACCCGTAACGTCTCATTTATGTGAAGTGTTTGCACTGAAGAGTTATGGATGTTGTGA
GTGTGTTATTGTTGTTGCTTCATTTCTCATTGTTCTTGTCCTGATGGGATGAATAC-ATTCCATCTTGTTTGCACTAAAA
AATATATGTTTGCATTGAAGAGCTATGCATATTGAGTG-TGTTCTCATTTTTATTTCTTTACCGTTGTTCTTGTTCTCAT
GGGCTGAATCTAAATCTAATTT----------------------------------------------------------
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--------------------TACCTCATCCTG------------------------------------------------
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>chr2B_1732
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------------------------------------------TTGTCCGAGTCCTCGTCGATCGAGATATTGTAGGAAAC
TGGTAT-GTGTCTGTCTGAAATTACCTGTAACGTGTCATTTATGTAAAGTGTTTGCATTGAAGAGTTATGGATATTGTAT
TGC-GTTATTGTTGTTGCTTCATTTCTCAATGTTCATGTCCTGATGGGGTGAATACAATTCCTTCTTGTTTCCACTAAAA
AATATATGTTTGCATTAAACAGCTATGCATATTGTGAGTTGTTCTCATTTTTATTTCTTTATCGTTGTTCTTGTTCTCAT
GGGGTGAATCTAAATCTAATTTTATCATCCTGTTCTCATTGTTTTTGTGCTGATGGGAAGAATTTAAATCATCCTGTTTG
CCCTAAACAAATATGTTTGCATTGAATATCCATGCATATCATGAGTGTGTTCTCATTTTTATTTCTTTTAAAGTTCTTCT
CGTTCCGATGGGCTGAATGTTACTTCATCCTGTAAAATGGAATCTTGTTTCATTACTTGCTATAGATCTCCACTACTCTG
TGAGATTTTTTAAATAGGAGCCTTAGACCCACTCCGTTAATTAAACATAAGAGAATTACCCTGTTAATTAGTTGAAAACT
AGGTGAAAACCTTGTAAGAGACTACTGGCCCGGCTACCATAACTACTGGAAACGCCCTATACATCGAGTGCCACGGACAC
TCGGCAAAGCGCCAATAACCACTGGCAACACCTTTGCCGAGAGTTGCACTCGGCAAAGGCCACCCGTCGTACACCTCTTA
GGCAAACATGA
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S---------------S----S-
-S---------S---SS--S--S---------SS----S-S--S---S-----S--------S--S--S-----S-----
---------S---S--S------S-------S-------------S---------S-----S--------------SS--
-----S----S---------S---S-SSSSS-S-SS-SSSS-------S----------SS--S------------S---
-------------------S-------------------S--------------S------S-------S----------
-------S-S------------------S----------------------------SS--------------------S
-------------SS---------------------------S--------------------SS---------------
--------------------------------------------------------------S-------------S---
-----S---------------------S-------S-S-SSS--SSSS-SSSSSS-------------------------
----------------------------------------------------S--S------------------------
--------------------------S------S----S-----------------------------------S-----
---------------S----------------------S------------------------------SS--------S
---S-S----------S-----------------------------------S---------------------------
-----------------------S-S--------------------------------------S---------------
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----------------------S-------------S------------------S------------------------
------------------------S----------------S-S------------------------------------
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-------------------------------------------------S---------------------------S--
S------------------S-----------------S-----------------------S--S---------------
----------SS-----S------S--S--------S------------------------------S------------
--------------------------------S---S-S-----------------------------------------
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>forward_300
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----------------------------------------AGACCCGGCGTAAACTGAAA--------------------
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>reverse_1953
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--------------------------------ACACGTCATGTTGTCCGAGT----------------------------
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