>input_sequence_78245
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------------------------------------------------------------------------ATGTCTCT
CGCCGGCTGCAGCGGCGACGGTGGCGCGGCGGCGGCGACGTGGACGCCACCGTACTGCACCATCGTGGCGGCCGACACGT
CCGACTTCTCCTACCTCTCCTGCCCGGCCTGCGGCCGCCGCACGCTCCCGGGCCACCCCGAGGGCGCACCCTGCGGGGCC
TGCGGCGGCCCCGCCCCGGCGCGCGCCTACCGGCTGCTCCTCTCCGTGGCCACCCACGACCGCGTCTTCCCCGTCGTCCT
CTTCGACCGCGCCGCGCGCGCCCTGCTCGGCTGCTCCGCCGACGAGCTCGCGCGCCTCTTCGCCGCGCACCGGGGCGCCG
CGCGCGCCGCCGCGGACGCCCTGCAGGGGGAGATGTGCCGCCTGGCGCTGCGCGAGCCCACCAAGGACGGCGCCGAGCAC
CTCCGCGCCGTCTCTGTCGTGCCGCTCCGCGACGGGTTCCGCCCGGTCGTCGACACCCTCAGGACGCTCTACTCGCGCGC
CGGCGGCTGA----------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G219400
ATCTCCTGCCTCCAAGCTCCCACCAAACTGTGAACACCACACGTCCAAACCACAAAATCACCACAACTCACCCTGCTTCC
TT----CCTCCCTTCCTTCCTGTCGACAACAAAACCACAGGCTGAAATCCAACCCCATGAGGCCAACAACCATCATCATC
CTCTACTAAGCACGCTGAATTCCAACGGTAGGCCGCACGAACTTCCCCTACTTTCCGCCACGACCATTCACGACATGCAA
GCACCG-CCCCGCATCTTGATTTCTCGTGACGCAGAGGGTTTCCTTCCCAGACAACAACATCACCCAATTCACGCCCTAC
CAATAAATTTTGTTTTACCACCTGACC-------CTACAGCCATGAACCGTCCTACAACCACCTCAAGCACGCTGGATTA
TCAACATATGAGCGCCTCAACAGTTCCACCGGGCCATGCTCCTAAGTCCTATCGGACAAAGCCCAA-GCTTCAATGAAAG
AAACCCTAGGGGCGGCGACCACATCGGGCAACAGCAAGCGGGTTCGCATCTACTCGGGCAACATACGCG----------T
A--CAGCTAAAGGCACGAAATCTCGGGGAAGACGGGCCGATTTCTGCTAACACGGCGCAAATTAGGTGAAGGTGAAGTCG
ACGAAACCGAGGCTTACCTAGGGTACGGATCTCCAGCAGGGAAGAGGACGACTGAAGAAACCCTACGAGTCCGGCGAACT
CCGGCGGAGGTCAGCGGGGGGAAGCCGCGGCGGCGACGGTGAGGGACAGAGACCCCGACTCGCGATGTTGGATTGGGATT
GGGTTGGTCCGGACACCGAAGGCACCCGGTCGGTCGGTCGGGAAGACGAC----GCAGATCCAGGCTATAAGAGGGAGCA
CGTGATTTTCCTAGCCGTCCGATCTCCAGTGGACGGCTCACAGAAAGCGAGCCACCCGTAGAAGACTAGAAGTCGTAACG
CAAAGTTTTAAAAAAGGCTGTGGCGCTTGTGGTGGGCCGGAATCGA---GCGACTCTTGGGCTTGGGCCAGGATGTCTCT
CGCCGGCTGCAGCGGCGACGGTGGCGCGGCGGCGGCGACGTGGACGCCACCGTACTGCACCATCGTGGCGGCCGACACGT
CCGACTTCTCCTACCTCTCCTGCCCGGCCTGCGGCCGCCGCACGCTCCCGGGCCACCCCGAGGGCGCACCCTGCGGGGCC
TGCGGCGGCCCCGCCCCGGCGCGCGCCTACCGGCTGCTCCTCTCCGTGGCCACCCACGACCGCGTCTTCCCCGTCGTCCT
CTTCGACCGCGCCGCGCGCGCCCTGCTCGGCTGCTCCGCCGACGAGCTCGCGCGCCTCTTCGCCGCGCACCGGGGCGCCG
CGCGCGCCGCCGCGGACGCCCTGCAGGGGGAGATGTGCCGCCTGGCGCTGCGCGAGCCCACCAAGGACGGCGCCGAGCAC
CTCCGCGCCGTCTCTGTCGTGCCGCTCCGCGACGGGTTCCGCCCGGTCGTCGACACCCTCAGGACGCTCTACTCGCGCGC
CGGCGGCTGACCGCCATGCTTA-------------------GATGGAACGCTTCTATGCGTCCTGCTCTGTAGTGCTGCG
AACTGTATCAGTCGATGATCTCTAACTGTGATGTTACAGTGTAATTGGTACTCCCTCTATAAAGAAATATAAGAGCATTT
AGATCACTAAAGTAGTGATCTGAACGCTCTTTTATTTCTTTACGGAGGGA------------------------------
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-----GTATTGATTATGATGAAAAGTAGTTGGAAAAATGTCAGCGTAATGTGCATACAAGGCATCATCCCATTTAAATCT
CTGATTTATCACAAAACTAGCAAATCATACATGTCAATGTTTCATCTCCTAAAAAATCATAGCAAATCATACATGTCTGC
TGAGGAGTACGTTGATTTGTGTACTAAGATGTGCAGTCTACTAGAGAATACTGTACAGAGGAAGACCTGTTCATGCTAGT
ACAAGAAAACTAGTGAAGCGTTACAACGAATGAAGGATCAGTGATCAGTGACTGGGTC---TCGTCTGCTACGACCTAAT
TCTGAAGACCTGCAGCTTCTCCTCGCTCAAGCACCCGAGGTACTTCTCCCCGGTGGAGCTCTCCGCAAACCTCAGGTCAA
GGATAGGTTGGCGGTGCGGCCTGAGATCAGCGAGCGGCTGAAACGAAGGCAGCCGCCACGTGCGAACTCCGCGCAGCGAC
TCGTCGCCGTAGGCAAAGAGGCGTTGGTCGGTTCCGCTGCAGGGTAAGATTGCGGACTTCGACATCCGCAGCTCACTCAC
GTTGCCGTTGCAGATCTGCTCTTTCACGAAGGATGTGCTGCTCTTCCTCCTCAGGAGAGCGTGGCACCCGAGCTTCCCAG
AACTGGAGAGAGTCGGTGATTGTGATATACCCATTTGAGATGCACTGCCATCGCCCGAAAACTCGACCCTCGGACGGAAG
GAAGCCACAATCAGATCACTTGATGGAGCGGCACATGCAAGGGATATGCAGACCCCTTGGTTTTCCATCCCGGTAAGCAA
ATTTGGCCTGGAAAAATGACCAACATT
>chr1D_1
ATCTCCTGCCTCCAAGCTCCCACCAAACTGTGAACACCACACGTCCAAACCACAAAATCACCACAACTCACCCTGCTTCC
TTCCTCCCTTCCTTCCTTCCTGTCGACAACAAAACCACAGGCTGAAATCCAACCCCATGAGGCCAACAACCATCATCATC
CTCTACTAAGCACGCTGAATTCCAACCGTAGGCCGCACGAACTTCCCCTACTTCCCGCCATGACCATTCACGACATGCAA
GCACCGCCCCCGCATCTTGATTTCTCGCGACGCA-AGGGCTTCCTTCCCAGACAATAC---CACCCAATTCGCGCCCTAA
CAATAAATTTTGTTTTACCACCTGATC-------CTACAGCCATGAACCGTCCTACAACCACCTCA-GCACGCTGGATTA
TCAACATACGAGCGCCTCAACAGCTCCACCGGGCCATGCTCCTAAGTCCTATCGTACAAAGCCCAA-GCTTCAGGGGAAG
AAACCCTAGGGGCGGCGACCACATCGGGCAACAGCAAGCGGGTTCGCATCTACTCGGGCAACATACGCG----------T
ATACAGCTAAAGGCACGAAATCTCGAGGAAGACA-GCCGATTTCTGCCTACACGACGCAAATTAGGTGCAGGTGAAGTCG
ACGAAACCGAGGCTTACCTAGGGTGCGGATCTCCAGCAGGGAAGAGGACAACTGAAGAAACCCTACGAGTCCGGCGAGCT
CCGGCGGAGGTCAGCGGGGGGAAGCCGCGGCGGCGACGGTGAGGGGCAGCGACCCCGACTCGCTATGTTGGATTGGGATT
GGGTTGGTCCGGACACCGAACGCACCCGGTCGGTCGGTCGGGAAGACGAC----GCAGATCCAGGCTATAAGAGGGAGCA
CGTGATTTTCCTAGCCGTCCGATCTCCAGTGGACGGCTCACAGAAAGCGAGCAACCCGTAGAAGACTAGAAGTCGTAACG
CAAAGTTTTAAAA-AGGCTGTGGCGCTTGTGG---GCCGGAATCGAACGGCGACTCTTGGGCTTGGGCCAGGATGTCTCT
CGCCGGCTGCAGCGGCGGCGGTGGCGCGGCGGCGGCGACGTGGACGCCGCCGTACTGCACCATCGTGGCGGCCGACACGT
CCGACTTCTCCTACCTCTCCTGCCCGGCCTGCGGCCGCCGCGCGCTCCCGGGCCACGCCGAGGGCGCAGCCTGCGGGGCC
TGCGGCGGCCCCGCCCCGGCGCGCGCCTACCGGCTGCTCCTCTCCGTGGCCACCCACGACCGCGTGTTCCCCGTCGTCCT
CTTCGACCGCGCCGCGCGCGTCCTGCTCGGCTGCCCCGCCGACGAGCTCGCGCGCCTCTTCGCCGCGCACCGGGGCGCCG
CGCGCGCCGCGGCGGACGCCCTGCAGGGGGAGATGTGCCGCCTGGCGCTGCGCGAGCCCACCAAGGACGGCGCCGAGCAC
CTCCGCGCCGTCTCCGTTGTGCCGCTCCGCGACGGGTTCCGCTCGGTCGCCGACACCCTCAGGACGCTCTACTCGCGCGC
CGGCGGCTGACCGCCATGCTTACATGGA----------------------------------------------------
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>chr1A_1
ATCTCCTGCCTCCAAGCTCCCACCAAACTGTGAACACCACACGTCCAAACCACAAAATCACCACAACTCACCCTGCTTCC
TTCCTCCCTTCCTTCCTTCCTGTCGACAACAAAACCACAGGCTGAAATCCAACCCCATGAGGCCAACAACCATCATCATC
CTCTACTAAGCACGCTGAATTCCAACCGTAGGCCGCATGAACTTCCCCTACTTTCCGCCATGACCATTCACGACATTCAA
GCACCGCCCCCGCATCTTGATTTCTCGCGACGCA-AGGGTTTCCTTCCCAGACAACACCACCACACAATTCGCGCCCTAA
CAATAAATTTTGTTTTACCACCTGACCCTACAGGCTACAGCCATGAACCGTCCTACAACCACCTCA-GCACGATGGATTA
TCAACATATGAGGGCCTCAACAGTTCCACCGGGCCATGCTCATAAGTCCTATCGTACAAAGCCCAAAGCTTCAGCGAAAG
AAACCCTAGGGGCGGCGACCACATCGGGCAACAGCAAGCGGGTTCGCATCTACTCGGGCAACATACGCCGATACGCGTAT
ATACAGCTAAAGGCACGAAATCTCGAGGAAGATA-GCCGATTTCTGCCTACACGGCGCAAATTAGGTGCAGGTGAAGTTG
ACGAAACCGAGGCTTACCTAGGGTGCGGATCTCCAGCAGGGAAGAGGACGACTGAAGAAACCCTACGAGTCCGGCGAGCT
CCGGCGGAGGTCAGCGGGTGGAAGCCGCGGCGGCGACGGTGAGGGACAGCGACCCCGACTCGCGATGTTGGATTGGGATT
GGGTAGGTCCGGACACCGAACGCACCCGGTCGGTCGGTCGGGAAGACGACGCAGGCAGATCCAGGCTATAAGAGGGAACA
CGTGATCACCCTAGCCGTCCGATCTCCAGTGGACGGCTCACAGAAAGCGAGCAACCCGTAGAAGACTAGAAGTCGTAACG
CAAAGTTTTAAAA-AGGCTGTGGCCCTTGTGG---GCCGGAATCGAACGGCGACTCTTGGGCTTGGGCCAGGATGTCTCT
CGCCGGCTGCGGCAGTGGCGGCGGC---GCGGCGGCGACGTGGACGCCACCGTACTGCACCATCGTGGCGGCCGAGACGT
CCGACTTCTCGTACCTCTCCTGCCCGACCTGCGGCCGCCGCGCGCTCCCGGGCCACCCCGAGGGCTCCCCCTGCGGCGCG
TGCGGCGGACCCGCCCCGGCGCGCGCCTACCGGCTGCTCCTCTCCGTGGCCACCCACGACCGCGTCTTCCCCGTCGTCCT
CTTCGACCGCGCCGCGCGCGCCCTGCTCGGCTGCTCCGCTGACGAGCTCGCGCGCCTCTTCGCCGCGCACCGGGGCGCCG
CGCGCGCCGCGGCGGACGCCCTGCATGGGGAAATGTGTCGCCTGGCGCTGCGCGAGCCCACCAAGGACGGTGCCGAGCAC
CTCCGCGCCGTCTCCGTCGTGCCGCTCCGTGACGGGTTCCGCCCGGTCGTCGACACCCTCAGGACGCTCTACTCGCGCGC
CGGCGGCTGACCGCCATGCTTAAGATGGAGTGTATGTGTTCGATGAAACGCTTGTATGCGTCCTGCTCTGTAGTGTTGCG
AACTGTCTCAATCGATGATCTCTAACTGTGATGTTATTACAGTGTAGTAATTGACCCAAAGACTTCCGGAGAGGCTTGTT
TTGCCCCCGCGCCGTCCTCCCCATGGCGGCTCGGGCGGCGACCCCCTCCCCTCCGGCCGAACCTCCCCTCCAGCCACCCC
CTTCCTCCCACTGCCGCCAAATGCTTCTGCCAGGCGAAGCCCGCGCGGATCTGGCGGCGGCAGGCCGTCGCTCCTCGTGC
AGACCGCTCGGGGGCCGGGGGAGCTCCGTGGGGCGGCGGGCGGCGCGGCGTGACTCCGGCGTGCGTCGCTTCTGCTGGTG
GTGGTCGGAGACAGTGGGGCGGATGCGTTCGCGGCTCCCTTCCGCTGGCCTTCCCCGAATCAGCGGCTCCCTGTTTGGCG
ACCGGTGGGCGTCGGGGATGGCTGCTGGTTTCGGCTCAGATGTGTCTAGCGGAGGTCGCTGTGAGGCGCGGGGTGGCGGT
GCTCACCCTTCCCCGAGGCGCCGCCGTCCGCTCTGGCTTGTGGTTCTGCCTTCTGGCGGCGCTGGCGTGGACGGCGTGCC
TGTCGGCTTCGGCTTGGCCCGATCCGATGGGGAGCGGCGGGGGGCAAGTTGGATCCTGTCGGATCTGGCCTGCGGCGACC
CGGATTTGGTCATGTGTGGCGATGGGGCTGCAGTGGCCCTTCTCTGTGGTGGTGCAATGAGCGGTGCTACGAGATCAATT
CGATGCTTATTGGAGGTGGTATGCTCATTTGGGCGAAAGCCCCGCTCCTGCCGGAGCCGGCGTCGACGACGCTTGTGGGT
GCCGCTAACCTCCTTGGAGGCGGTGCTGTCATGGTGACTACCCCTTCACATCCCAGGGGAAACCCATGTTCCAAGTCCGT
TTGGAACGGACGATGGCAGCGCACATTGTGTCGCATCCCTTCTTGAAGGCATCATCTGGGGGGAGGCTCGGTTGGTCTCT
GTGGTGGCTGCTCGCTGCGGGTTTGACGGTTTTGGTGGTGCGGCCGGCTTGGCGCTGATGGTGGTCTGTGCTTTGTTGGC
GAGGAGGTGGTGCTCTGTATGCGAGATCATGGCTCAGCCTTGCTCTGGATTGGTTTTGATTTTCATCCGAAGCCGGGTTA
GGGGTCGTTATCCTACTCAATGGATCACCTCGTTCCCATATGACACCTCTACCTCTGCTGGGTGTTGTTGGGTGGCGACC
AGACGGCCAACGTTCAAGGCTCTCCTTGCTTGGTCAGATGAAGATGTAAGTTGAGGTCCTCCTCCTGGTGGGTTGTGCTG
ATGAGATTTGTGATGGCGGTCGGTGGTGTTGGTGCGTCCAGTTTCGGATTGTCAAAAGACCTTCTCCCTGTGTGCCCTTT
CCTCGGCGGGTCTTCCGGTGGTTCTGCTGGATGTGTGTGTGTGTGTTTTCGGTTGCATCTCTTCTCATGTTTTCCCCGTG
TACTCTGGTTCATTTGAATCTATCTTGTATGGAGCCACGAGGCTTCTAGGCAAATTCGATTGAATATATTCAGGTGGGGA
TCCTCGTATTGATTATGATGAAAAGAAGTTGGAAAAATGTCAGCGTAATATGCATACAAGGCATCATCCCATTTGAATCT
CTCATTTATCACAAGACTAGCAAATCATACATGTCAATGTTTCATCTCCTAAAAA-------------------------
---------CGTTGATTTGTGCGCTAAGATGTGTGGT---CTAGAGAATACTGTACAGAGGAAGACCTGTTCATGCCAGT
ACAACAAAACTAGTGAAGCGTTACAACGAATGAAGGATCAGTGATCAGTGACTGGGTC---TCGTCTGCTACGACCTAAT
TCTGAAGACCTGCAGCTTCTCCTCGCTCAAGCACCCAAGGTACTTCTCCCCGGTGGTGCTCTCCGCAAACCTCAGGTCAA
GGATCGGTTGGTGGTGCGGCCTGAGATCAGCGAACAGCTGAAACGAAGGCAGCCGCCATGTGCGGACTCCGCGCAGTGAC
TCATCGCCATAGGCAAAGAGGTGTTGGCCGGTTCCGCTGCAGGGTATGATTGCAGACTTCGACATCCGCAGCTCACTCAC
GTTGGCATTGCAGATCTGCTCTTTCACGAAGGATGTGCTGCTCGTCCTCCTCAGGAGAGCGTGGCACCCGAGCTTTCCAG
AACCGGAGAGCGTTGGTGATTGTGATATACCCATTTGAGATGCACTGCCGTCGCCCGAAAACTCGACCCTTGGACGGAAG
GAAGCCACAATCAGATCACTTGATGGAGCGGCACATGCAAGGGATATGCAGACCCCTTGGTTTTCCATCCCGGTAAGCAA
ATTTGGCCTGGAAAAATGACCAAC---
>chr1D_1842
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-------TACGCTGATTTGTGCACTAAGATGTGTGTTA----AGAGAATACTGTACAGAGGAAGACCTGGTTAGGCTAGT
ACAACAAAGCTACAGATGTGCTACAATTAATGAAGGACCAGTGATCACTGACTGGCTCTCTTCGTCTGCTACGACCTAAT
TCTGAAAACCTGCAGCTTCTCCTCGCTCAAGCACCCCAGGTACTTCTCCCCGGTGGAGCTCTCCGCAAACCTCAGGTCAA
GGATCGGTTGGCGGTGCGGCCTGAGATCAGTGCACGGCTGAAAAGAAGGCAGACGCCACGTGCGGACTCCACGCAGCGAC
TCGTCACCATAGGCAAAGAGGTGTTGGCCGGCTCCACTGCAGGGTATGATCGCGGACTTCGACATCCGCAGCTCACTCAC
GTTGCCGTTGCAGATCTGCTCTTTCACGAAGGATGTGCTGCTCGTCCTCCTCAGGAGAGCGTGGCACCCGAGCTTTCCAG
AACCGGAGAGAGTCGGTGATTGTGATATACCCATTTGAGATGCACTGCCATCGCCCGAAAACTCGACCCTCGGACGAAAG
GAAGCCACAATCAGATCACTTGATGGAGCGGCACATGCAAGGGATATGCAGACCCCTTGGTTTTCCGTCCCGGTAAGCAA
ATTTGGCCTGAAAAAATGACCAACATT
>SNPs
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---------S----------------------------------------------------------------------
--------------------------S---------------------------------S-------------------
---------------------------S------S----------------------S--S----------S-------S
------------------------------------------------------------------S-------------
------------------------------------------------------S------------------SS-----
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-------------------------S-------SS------------SS-------------------S-----------
------------------------S----------------------------------------------------S--
-------------------------------------------------S------------------------------
--------------------S-----------------------------------------------------------
----------------------------------------------------S---------------------------
-------------S------------------SSS---------------------------------------------
-----------------S--------------------------------------------------------------
-----------------------------------------S--------------------------------------
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----------S---------------------------------------------------------------------
--------------S-----------------------------------------------------------------
---------------------------------------------S-------S---------------------S----
------S---S-------------------------SSSSSSSS-S-SS-S-SS-S-S-SS-SSSSSSSSS--SSSSS--
SSSS-S-SSSSSSSSSSSS-SS-SS--SSS-SSSSSSSSSSS-SSSSSSS------------------------------
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-------------------------S-----------------------S------------------------S-----
--S-----------S----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--------------S-----------SS--SSS----------------------------------------
----S---------------------------------------------------------------------------
------------------------------------S-------------------------------------------
----S----------------------------S------------------------------S---------------
--------S------------S-----S------------------S---------------------------------
-------------------------------------------S-------------------------------S----
---S----------------------------------------------------------------------------
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>forward_320
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------------------------------------------------------------TCACCCAATTCACGCCCTAC
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>reverse_3609
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--------GTAGGCAAAGAGGCGTTGGT----------------------------------------------------
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