>input_sequence_78243
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-----------------------------------ATGGCTATCATTCATGGCAATACTATGGCCACGGGTCAGTATACG
AAAGGCTCAAATGACCCCCTTGGCACCGAGT---------TGAATGAAATTTCAGATAATGACGCTTCCCCACTTGAAGA
AGGTAGCAAGTCAAGCAATGGAGGCGATTCAGTGGCTCCCAATCCCAAAAGGGCCAAAACAAAGTCTAGTGTTGATGAGG
GGCTGCAATCAACCCTTATGGCAGTGGGTGAAAGGCTTGCTATTGCCATAGAGAGGAGTGTTAGCACCGACAACAGCTCC
ACGAGCATCTCTACGAACAAGTCTACGAATAA------------CTC------------------------CATGGTGGG
CCTTTGGGAGGGCATGCAAGATATTCCCTTTTTTGGTATTGATTACCTTGCCCATTATTTTGCTTACTTGGTTGAGAATC
CGAACATTGCAATGGCGTTTCAACTCTTGGAGAAGGACCAAAAGAGTATTTGGGTTGATAGGTGTGTCAAGAACACCTTC
CCTCCAATGGATGATTGA--------------------------------------------------------------
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>chr1A_1_TraesCS1A01G349800
ATTATAGTCATGACACATCTGTGCATAACCTTATAGGAAATGGAGGCTAAACAAGTTGTATGGACAGCTCCGATGACTTC
CTTCATGCTTGAACACCTATGCAAGGTTGTGGGTGATGGAGTTAGAACATCAACTGGCTTCAAGAAGTGCCAATTAGCTC
GTTGTGCGACTGCTATGAATGAGCATTTTCAGCTCAATTCGACTCATGCCAACATTGGTAATCACAATAGGACATGGAGG
AGGAAATGGGGAACAATACTCAGACTTAGGGGGTTGAGTGGTGCATTATGGGATGATGAGCAGTCTATGATCGTTCTTGA
CCATGAGCACTACACTAACCATATTAAGGTTTTTTTTTTGGAAAAGGGGGTTTACCCCGGCCTCTGCATCAGAACTAACC
ATATTAAGGTATCTCTATATGTCAAATACTAACTCCATCAAGCTG---------GAATGTGTTTCTATGTGCCATATACT
TGTTGGAAATAGTTTCTATATGCCATTTAGTTGCTGGAAATTGTTTCTACATGTCAAATATAAGCTTAAATGAATTTTTA
--------------------------------------------------------------TATGCCATATGCTTGCTG
GAAATAGTGTCTACATCTCATGTACTTGCTGGAATTAATTTTATATGTAAAAATACATGCTGGATTTCATTTGTTTTTGC
TA------------------------------------------------------------------------------
---------------------------------------------------------------------------AATAG
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------------------------------------------------------------TTGCTGGATATAGTTTCTGT
ATGCAAT---TTATTTGCTGGAATTTGTTTCTACATGTAAAATATAACCTGAAATGAGTTTCTT----------------
----------------------------------------------TATGTCAAATACTTGCTGGATTTCATTTGTTTAT
GCT-----------------------------------------------------------------------------
------------------------------------------------AAATAGTTGCTGGATATAGTTTCTATATGCCA
TTTACTTGCTGGAATTTGTTTGCACATGTAAAATATAATCTGAAATGAGTTTCTTTGTGTCAAATACTTGTTGGATTTCA
TTTGTTTATGCTAAATACTTGCTACATGTCTACTTGTTGATGTTGTTTTC-TTTTTTCTAGGACCACAAATAGGATGAGC
CTTTTCTGAACAAGCCTCTCAAGCACTATAATGAGATGGCTATCATTCATGGCAATACTATGGCCACGGGTCAGTATACG
AAAGGCTCAAATGACCCCCTTGGCACCGAGT---------TGAATGAAATTTCAGATAATGACGCTTCCCCACTTGAAGA
AGGTAGCAAGTCAAGCAATGGAGGCGATTCAGTGGCTCCCAATCCCAAAAGGGCCAAAACAAAGTCTAGTGTTGATGAGG
GGCTGCAATCAACCCTTATGGCAGTGGGTGAAAGGCTTGCTATTGCCATAGAGAGGAGTGTTAGCACCGACAACAGCTCC
ACGAGCATCTCTACGAAC------------AAGTCTACGAATAACTC------------------------CATGGTGGG
CCTTTGGGAGGGCATGCAAGATATTCCCTTTTTTGGTATTGATTACCTTGCCCATTATTTTGCTTACTTGGTTGAGAATC
CGAACATTGCAATGGCGTTTCAACTCTTGGAGAAGGACCAAAAGAGTATTTGGGTTGATAGGTGTGTCAAGAACACCTTC
CCTCCAATGGATGATTGAAGATTGAAGGCATGTGTGGTATTTGCATGACCTCTTTTGGTATGACCCAACATTATGGACTT
TGGGTTGTATGACTTACTTTTGATGTCAACCAGACTATGAACTATGGGTTGTATAACGTAGAGATGATGTACTA-TTCAT
ATCTACATCTCATGCACTACTAGTTTATTATGTATAGTTGCTACTTGTCTAAAATGTTGGACTC----TGATTATGAAGT
TGCACTTTCCTATTTTCGAAATTATTGGTG-TTGACATGTTATGTTGGTCTGTGATGTTAAAGTTTACTTCTAAATTTCA
AAATCAAAGTTGACCCCAGATTTGATACATCTATATTGCTGAAATTACATATTGGAGGGGTAATCTCACCACCTCAAACA
AAATGGTGAGTGTCACAATCATCCACTCTTTCATCCTCTCAACCAAACACACAAATTGTTATCCCTACCCACCTGTATCC
TCCCTACCAAACAAAATAATGTGGCTATCCAACTCATCTAATCCCTCACAACCAAACAACAA-AAAAAGGCTATCCCCAG
CCACATGGTTAAGGATATCCTTAGCCAGGTATCTTTGCCAGTGAACCAAACGCCACAGGCTCACGCCGCCTACTCTCCAG
GATCGAGGTTTATCCTCCTCCGCCGACGAATATATAGGCCCATATGGCATGCGGGGCCATGTTTGCCAGACCGCGAGAAT
GAACCAGCATTATCCTCGGCACAAGCTAGATAGGTGTATTTAAAGATATGTTGGCGTTTCCAGTACGTGAAAGATATGTT
CAAGGATTCCGCGAGTTGCACACGGCCAATTGTTAGTATTACATTTCGATTGGATTCGGCGACGTGTTGGTGAACTTGTG
ATCGATCACTGGTCTAGGATATGCTCGACGTCCACTAGTAAATGCTGATGAAAGCGGCTTAATGCTGCATGTGACGAAGA
CAGTGGGAATTGATGTTAGGTGTGTTTTACTCTTGCGTGATGAGAGCATGGTACACCGTACCAAC
>chr5D_1
ATTATAGTCATGACACATCTGTGCATAACCTTATAGGAAATGGAGGCTAAACAAGTTGTATGGACAGCTCCGATGACTTC
GTTCATGCTTGAACACCTATGCAAGGTTGTGGGTGATGGAGTTAGAACATCAACTGGCTTCAAGAAATGCCAATTGGCTC
GTTGTGCGACTGCTATGAATGAGCATTTTCAGCTCAGTTTGACTCATGCCAACATTGGTAATCACAATAGGACATGGAGG
AGGAAATGGGGAACAATACTCAGACTTAGGGGGTTGAGTGGTGCATTATGGGATGATGAGCAGTCTATGATCGTTCTTGA
TCATGAGCACTAC------------------------------------------------------------ACTAACC
ATATTAAGGTATCTCTATATGTCAAGTA----------CTAACTCCATCAAGTTGAATGTGTTTCTATGTGCCATATACT
TGTTGGAAATAGTTTCTATATGCCATTTAGTTGCTGGAAATTGTTTCTACATGTCAAATATAAGCTTAAATGAATTTGTA
--------------------------------------------------------------TATGCCATATGCTTGCTG
GAAATAGTGTCTACATGTCATGTACTTGCTGGAATTAATTTTATATGTCAAA-TACATGCTGGATTTCATTTGTTTATGC
TA------------------------------------------------------------------------------
---------------------------------------------------------------------------AATAG
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------------------------------------------------------------TTGCTGGATATAGTTTCTAT
ATGCAAT---TTACTTGCTGGAATTTGTTTCTACATGTAAAATATAACCTGAAATGAGTTTCTT----------------
----------------------------------------------TATGTCAAATACTTGCTGGATTTCATTTGTTTAT
GCT-----------------------------------------------------------------------------
------------------------------------------------AAATAGTTGCTGGATATAGTTTCTATATGCCA
TTTACTTGCTGGAATTTGTTTGCACATGTAAAATATAATCTGAAATGAGTTTCTTTCTGTCAAATACTTGTTGGATTTCA
TTTGTTTATGCTAAATACTTGCTGCATGTCTACTTGTTGATGTTGTTTTC-TTTTT-CTAGGACCACAAAGAGGATGAGC
CTTTTCTGAACAAGCCTCTCAAGCACTATAATGAGATGGCTATCATTCATGGCAATACTATGGCCACGGGTCAGTATACG
AAAGGCTCAAATGACCCCCTTGGCACCGAGA---------TGAATGACATTTCAGATAATGAGGCTTCCCCACTTGAAGA
AGGTAGCAAGTCAAGCAATGGAGGCGATTCAGTGGCTCCTAATCCCAAAAGGGCCAAAACAAAGTCTAGTGTTGATGAGG
GGCTGCAATCAACCCTTATGGCAGTGGGTGAAAGGCTTGCTATTGCCATAGAGAGGAGTGTTAGCACCGACAACAGCTCC
ACGAGCATCTCTACGAAC------------AA------------CTC------------------------CATGGTGGG
CCTTTGGGAGGGCATGAAAGATATTCCCTTTTTCGGTATTGATTACCTTGCCCATTATTTTGCCTACTTGGTTGAGAATC
CGAACATTGCAATGGCGTTTCAACTCTTGGAGAAGGACCAAAAGAGTATTTGGGTTGCTAGGTATGTCAAGAACACCTTC
CCTCCAATGGATGATTGAAGATTGAAGGCATGTGTGGTATTTGCATGACCTCTTTTGGTATGACCCAACATTATGGACTT
TGGGTTGTATGACTTACTTTTGATGTCAACCAGACTATGAACTATGGGTTGTATAACTTAGAGATGATGTACTATTTCAT
ATCTACATCTCATGCACTACTAGTTTATTATGTATAGTTGCTACTTGTCTAAGATGTTGGACTA----TGATTATGAAGT
TGCACTTTCCTATTTTCGAAATTATTGGTG-TTGACATGTTATGTTGGTCTGTGATGTTAAAGTTTACTTCTAAATGTCA
AAATCAAAGTTGAGCCCAGATTTGATATTTCTATATTACTGAAATTACATATTGGAGGGGTAATCTCACCACCTCAAACA
AAATGGTGAGTGTAATAATCATCCACTCTTTCATCCTCTCAACCAAACACACAAATGGTTATCACTACCCACCTGTATCC
TCCCTACCAAACAAAATAATGTGGTTATCCAACTCACCTAATCCCTCACAACCAAACAACAA-AAAATGGCTATCCCCAG
CCACATGGTTAAGGATATCCTTAGCCAGGTATCTTTGCCCGTGAACCAAACGCCAC------------------------
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-----------------------------------------------------------------
>chr2D_2
-TTATAGTCATGACACATATGTGCATAACCTTATAGGAAATGGAGGCTAAACAAATTGTATGGACAGCTCCGATGACTTC
CTTCATGCTTGATCACCTATGCAAGGTTGTGGGTGATGGAGTTAGAACATCAACTGGCTTCAAGAAGTGCCAATTGGCTC
GTTGTGCGACTGCTATGAATGAGCATTTTTAGCTCAATTTGACTCATGCCAACATTGGTAATCACAATAGGACATGGAGG
AGGAAATGGGGAACAATACTCAGACTTAGGGGGTTGAGTGGTGCATTATGGGATGATGAGAAA--TATGATCGTTCTTGA
TCATGAGCACTAC------------------------------------------------------------ACTAACC
ATATTAAGGTATCTCTATATGTCAAGTA----------CAAGCTG---------GAATGTGTTTCTATGTGCCATATACT
TGTTGGAAATAGTCTCTATATGCCATTTACTTGCTGGAAATTGTTTCTACATGTCAAATATAAGCTGAAATGAGTTTCTT
--------------------------------------------------------------TATGTC------------
--------------------------------------------------AAATACTTGCTGGATCTCATTTGTTTATGC
TA------------------------------------------------------------------------------
---------------------------------------------------------------------------AATAC
TTGCTGGATATAGTTTTTATATGCCATTTACTTGCTGGAAATTGTTTCTACATGTCAAATATAAGCTGAAATGAGTTTCT
T-------------------------------------------------------------------------------
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-----------------TATGTCAAATATTTGCTGGATCTCATTTGTTTATGCTAAATACTTGCTGGATATAGTTTCTAT
ATGCCAT---TTACTTGCTGGAATTTGTTTCTACATGTAAAATATAACCTGAAATGAGTTCCTT----------------
----------------------------------------------TATGTCAAATACTTTCTGGATTTCATTTGTTTAT
GCT-----------------------------------------------------------------------------
------------------------------------------------AAATAGTTGCTGGATATAGTTTCTATATGCCA
TTTACTTGCTGGAATTTGTTTCTACATGTAAAATATAACCTGAAGTGAGTTTCTTTATGTG-AATACTTGCGGGATTTCA
TTTGTTTATGCTAAATACTTGCTGCTTGTCTACTTGTTGATGTTGTTTTC-CTTTTTTTAGGACCACAAAGAGGATGAAC
CTTTTTTGAACAAGCCTCTGAAGCACTATAATGAGATGGCTATCATTCATGGCAATACTATGGCCACGGGTCAATATACG
AAAGGCTCAAATGACCCCCTTGGTACAGAGG---------TTAATGAAATTTCAGATAATGAGGCTTCCCCACTTGAAGA
AGGTAGCAAGTCAAGCAATGGAGGCGATTCTGTGGCTCCCAATCCCAAAAGGGCCAAAACAAAGTCTAGTGTTGATGAGG
GGCTGCAATCAACCCTTATGGCAGTGGGTGAAAGGCTTGCTACTGCCATAGAGAGGAGTGTTAGCACCGACAACAGCTCC
ACGAGCATCTCTACGAAC------------AA------------CTC------------------------CATGGTGGG
CCTTTGGGAGGGCATGAAAGATATTCCCTTTTTCGGTATTGATTACCTTGCCCATTATTTTGCCTACTTGGTTGAGAATC
CGAACATTGCAATGGCGTTTCAACTCTTGGAGAAGGACCAAAAGAGTATTTGGGTTGCTAGGTATGTGAAGAACACCTTC
CCTCCAATGGATGGTTGAAGATTGAAGGCATGTGTGGTATTTGCATGACCTCTTTTGATATGATCCAACAATATGGAGTT
TGGGTTGTATGACTTACTTTTGATGTCAACCAGACTATGAACTATGGGTTGTATAACTTAGAGATGATGAACTATTTCAT
ATCTACATCTCATGCACTACTAGTTTATTATGTATAGTTGCTACTTGTCTAAGATGTTGGACTA----TGATTATGAAGT
TGCACTTTCCTATTTTCGAAATTATTGGTG-TTGACATGTTATGTTGGTCTGTGATGTTAAAGTTTACTTCTAAATTTCA
AAATCAAAGTTGAGCCCAGATTTGATATATCTATATTGCTGAAATTACATATTGGAGGGGTAATCTCACCACCTCATACA
AAATGGTGAGTGTAACAATCATCCACTCTTTCATCCTCTCAACCAAACACACAACTGGTTATCCCTAGCCACCTGTATCC
TCCCTACCAAACAAAATAATGTGGTTATCCAACTCACCTAATCCCTCGCAACCAAACAACAA-AAAATGGCTATCCCCAG
CCACATGGTTAAGGATATCCTTAGCCAGGTATCTTCGCTCGTGAACCAAACGCCAC------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr6B_2
-TTATAGTCATGACACATCTGTGCATAACCTTATAGGAAATGGAGGCTAAACAAATTGTATGGACAGCTCCGATGACTTC
CTTCATGCTTGATCACCAATGCAAGGTTGTGGGCGATGGAGTTAGAACATCAACTAGCTTCAAGAAGTGCCAATTGGCTC
GTTGTGTGACTGCTATGAGTGAGCATTTTCAGCTCAATTTGACTCATGCCAACATTGGTAATCACAATAGGACATGGAGG
AGGAAATGGGGAACAATACTCAGACTTAGGGGGTTGAGTGGTGCATTATGGGATGATGAGAAGTCTATGATCGTTCTTAA
TCATGAGCACTAC------------------------------------------------------------ACTAACC
ATATTAAGGTATCTCTATATGTCAAGTA----------CAAGATG---------GAATGTGTTTCTATGTGCCATATACT
TGTTAGAAATGGTTTCTATATGCCATTTACTTGATGGAAATTGTTTCTACATGTCAAATATAAGCTGAAATGAGTTTCTT
--------------------------------------------------------------TATGTC------------
--------------------------------------------------AAATACTTGCTGGATCTCATTTGTTTATGC
TA------------------------------------------------------------------------------
---------------------------------------------------------------------------AATAG
--------------------------------------------------------------------------------
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------------------------------------------------------------TTGTTGGATATAGTTTCTAT
ATGCCATTAATTACTTGCTAGAATTTGTTTCTACATGTAAAATATAACCTGAAATGAGTTTCTT----------------
----------------------------------------------TATGTCAAATACTTTCTGGATTTCATTTGTTTAT
GCT-----------------------------------------------------------------------------
------------------------------------------------AATTAGTTGCTGGATATAGTTTCTATATCCCA
TTTACTTGCTGGAGTTTGTTTCTACATGTAAAATATAACCTGAAGTGAGTTTCTTTATGTGAAATACTTGCGGGATTTCA
TTTTTTTATGCTAAATACTTGTTGCTTGTCTACTTGTTGATGTCGTTTTCTTTTTT-CTAGAACCACAAAGAGGATGAAC
CTTTTCTGAACAAGCCTCTGAAGCACTATAATGAGATGGCTATCATTCATGGCAATACTATGGCCACGGGTCAATATACG
AAAAGCTCAAATGACCCCCTTGGTACAGAGG---------TTAATGAAATTTCAGATAATGAGGCTTCCCCACTTGAAGA
AGGTAGCAAGTCAAGCAATGGAGGCGATTCAGTGGCTCCCAATCCCAAAAGGGCCAAAACAAAGTCTAGTGTTGATGAGG
GGCTGCAATCAACCCTTATGGCAGTGGGTGAAAGGCTTGCTATTGCCATAGAGAGGAGTGTTAGCACTGACAACAGCACC
ACGAGCATCTCTACGAAC------------AA------------CTC------------------------CATGATGGG
CCTTTGGGAGGGCATGAAAGATATTCCCTTTTTCGGTATTGATTACCTTGCCCTTTATTTTGCCTACTTGGTTGAGAATC
CGAACATTTCAATGGCGTTTAAACTCTTGGAGAAGGACCAAAAGAGTATTTGGGTTGCTAGGTATGTGAAGAACACCTTC
CCTCCAATGGATGGTTGAAGATTGTAGGCATGTGTGGTATTTGCATGACCTCTTTTGATATGACCCAACAATATGGACTT
TGGGTTGTATGACTTACTTTTGATGTCAACCAGACTATGAACTATGGGTTGTATAACTTAGAGATGATGTACTATTTCAT
ATCTACATCTCATGCACTACTAGTTTATTATGTATAGTTGCTACTTGTCTAAGATGTTGGACTA----TGATTATGAAGT
TACAGTTTCCTATTTTCGAAATTATTGGTG-TTGACATGTTATGTTGGTCTATGATGTTAAAGTTTATTTCTAAATTTGA
AAATTAAAGTTGAGCCCAGATTTGATATATCTATATTGCTGAAATTACATATTGGAGGGGTAATCTCACCACCTCATACA
AAATGGTGAGGATCACAATCATCCACTCTTTCATCCTCTCAACCAAACACACAACTAGTTATCCCTAGCCACTTGTATCC
TTCCTACCAAACAAAATAATGTGGTTATC-AACTCACCTAATCCGTCACAACCAAACAACAA-AAAATGGCTATCCCCAG
CCACATGGTTAAGGATATCCTTAGCCAGTTATCTTCGCTCGTGAACCAAACGCCAC------------------------
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-----------------------------------------------------------------
>chr2B_2
-TTATAATCATGAAACATCTGTGCATAACCTTATAGGAAATGGAGGCTAAACAAATTGTATGGACAGCTCCGATGACTTC
CTTCATGCTTGATCACCTATGCAAGGTTGTGGGCGATGGAGTTAGAACATCAACTGGCTTCAAGAAGTGCCAATTGGCTC
GTTGTGCGACTGCTATGAATGAGCATTTTCAGCTCAATTTGACTCATGCCAACATTGGTAATCACAATAGGACATGGAGG
AGGAAATGGGGAACAATACTCAGACTTAGGGGGTTGAGTGGTGCATTATGGGATGATGAGAAGTTTATGATCGTTCTTGA
TCATGAGCACTAC------------------------------------------------------------ACTAACC
ATATTAAGGTATCTCTATATGTCAAGTA----------CAAGCTG---------GAATGTGTTTCTATGTGCCATATACT
TGTTGGAAATAGTTTCTATATGCCATTTACTTGCTAGAAATTGTTTCTACATGTCAAATATAAGCTAAAATGAGTTTCTT
--------------------------------------------------------------TATGTC------------
--------------------------------------------------AAATACTTGCTGGATCTCATTTGTTTATGC
CA------------------------------------------------------------------------------
---------------------------------------------------------------------------AATAC
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------TTGCTGGATATAGTTTCTAT
ATGCCAT---TTACTTGCTGGAATTTGTTTCTACATGTAAAATATAACTTGAAATGAGTTTCTT----------------
----------------------------------------------TATGTCAAATACTTTCTGGATTTCATTTGTTTAT
GCT-----------------------------------------------------------------------------
------------------------------------------------AAATAGTTGCTGGATATAGTTTCTATATGCCA
TTTACTTGCTGGAATTTGTTTCTACATGTAAAATATAACCTGAAGTGAGTTTCTTTATGTGAAATACTTGCGGGATTTCA
TTTGTTTATGCTAAATACTTGCTGCTTGTCTACTTGTTGATGTCGTTTTCTTTTTT-CTAGGACCACAAAGAGGATGAAC
CTTTTCTGAACAAGCCTCTGAAGCACTATAATGAGATGGCTATCATTCATGGAAATACTATGGCCACAGGTCAATATACG
AAAGGCTCAAATGACCCCCTTGGTACAGAGG---------TTAATGAAATTTCAGATAATGAGGCTTCCCCACTTGAAGA
AGGTAGCAAGTCAAGCAATGGAGGCGATTCAGTGGCTCCCAATCCCAAAAGGGCCAAAACAAAGTCTAGTGTTGATGAGG
GGCTGCAATCAACCCTTATGGCAGTGGGTGAAAGGCTTGCTATTGCCATAGAGAGGAGTGTTAG----------------
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>chr7D_31
------------------------------TTATAGGAAATGGAGGCTAAACAAGTAGTATGCACAGCTCCGATGACTTC
CTTCATGCTTGATCACCTAGGCAAGGTTGTGGGTGATGGACTTAGAACATCAGCTGGCTTCAAGAAGTGCCAATTGGCTC
GTTGTGCGACTGCTATGAATGAGCATTTTCAGCTCAATTTGACTCATGCCAACGTTGGTAATCACAATAGGACATGGAGG
AGGAAATGGGAAACAATAATCAGACTTAGGGGGTTGAGTGGTGCATTATGGGATGATGAGAATTCTATGATCGTTCTTGA
TCATGGGCACTAT------------------------------------------------------------ACTAACC
ATATTAAGGTATCTCTATATGTCAAGTA----------CAAGCTG---------GAATGTGTTTCTATGTGCCATATACT
TGTTGGAAATAGTTTCTATAGGCCATTTACTTGCTGGAAACTGTTTCTACATGTCAAATAGAAGCTGAAATGAGTTCCTA
TATGCCATATGCTTGCTAGAAATAGTGTATATATATAACATTTACTTGTTGGAATTAATTTATATGTC------------
--------------------------------------------------AAATACTTGTTGGATATAATTTCTATATGC
CATTTAGTTGCTAGAAACTGTTTCTACATGTGAAATATAAGCTGGCATGAGTTCGTATATGCCATATGCTTGCTGGAAAT
AGTGTATGTATATAACATTTACTTGTTGGAACTAATTTATATGTCAAATACTTGTTGGATATAATTTCTATGTCAAATAC
TTGTTGGATATAATTTCTATATGCCATTTAGTTGCTGGAAACTGTTTCTACATGTCAAATATAAGCTGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATCATTTAC
TTGCTGGAATTAATTTATATGCCAAATACTTGCTGGATATAATTTATATATGC---------------------------
----AAT---TTAGTTGCTGGAAACTGTTTCTACACGTCAAATATATGTTGAAATGAGTTTGTATATGCCATATGCTTGC
TGTAAATAGTGTATATATATAACATTTACTTATTGGAATTAATTTATATGTCAAATACTTGCTGGATATTATTTCTATAT
GCCATTTAGTTGCTGGAAACTGTTTCTACATGTCAAATATATGTTGAAATGAGTTTGTATATGCCATATGCTTGCTGGAA
ATAGTGTATATATGTAACATTTACTTGCTGGAATTAATTTTAGATGTCAAATAATTGCTTGATATAGTTTCTATATGTCA
TTTACTTGTTGGAATTTGTTCCTACATGTGAAATATTACCTGAAATGAGTTTCTTGATGTCAAATACTTGCTGAAATTCA
TTTATTTGTGCTAAATACTTGTTGCATGTCTATTTGTTGATGTTGTTTTCTTTTTT-CTAGGACCACAAAGAGGATGAGC
CTTTTCTGAACAAGCCTCTCAAGCACTATAATTTGATGGCTATCATTCATGGCAATACTATAGCCACGAGTCAATATACA
AAAGGCTCAAATGACCCCCTTGCT---------ACAGAGGTGAAGGACATTTCAGATAATGAAGCTTACCCACTTGAAGA
AGGTAGCAACTCAAGCAATGGAGGTGATTCAGTGGCTCCCAATCCCAAAAGGGCCAAAACCAAGTCTAGTGTTGATGAGG
GGCTGCAATCAACCCTTATGGCAGCGGGTGAAAGGCTTGCTATTGCCATAGAGAGGAGTGTTAGCACCGACAACAGCTTC
ACGAGCATCTTTATGAAC------------AA------------CTCTATGAACAAC------------TCGATGGTGGG
CCTTTGGGAGGGCATGAAAGATATTCCCTTTTTCGGTATTGATTACCTTGCCCATTATTTTGCCTACTTGGTTGAGAATC
CGAACATTGCAATGGCGTTTCAACTCTTGGAGAAGGACCAAAAGAGTATTTGGGTTGCTAGGTATGTGAAGAACACCTTC
CCTCCAATGGATGGTTGAAGATTGAAGGCATGTGTGGTATTTGCATGACCTCTTTTGATATAACCCAACATTATGGACTT
TGGGTTATATGACTTACTTTTGCTGTCAACCAGACTATGAACTATGGGTTGTATAACTTAAAGATGACATACTATTTCAT
ATCTACATCTCATGCACTACTAGTTTAT-ATGTATAGTTGCTACTTGTCTAAGATGTTGGACTG----TGATTATGAAGT
TGCACTTTCCTAGTTTCAAAAACATTGGTGTTTGACATGTTATGTTGGTCTGTGATGTTAAAGTTTACTTTTAAATTTCA
AAATCAAAGTTGAGCCCAGATTT----------------------TACATATTAGAGGGGTAATCTCACCACCTCAAACA
AAATGGTGAGTGCAACAATCATCCACTCTTCCATCCTCTCAACCAAACACACAAATGGTTATCCCTAGCCACCTG-ATCC
TCCCTACCAAACAAAATAATGTGGTTATCCAACTCACCTAA---------------------------------------
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-----------------------------------------------------------------
>chrUn_696
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----------------------ATTTGTTTCTACATGTAAAATATAACCTGAAATGAGTTTCTT----------------
----------------------------------------------TATGCCAAATACTTGCTGGATTTCATTTGTTTAT
GCT-----------------------------------------------------------------------------
------------------------------------------------AAATAGTTGCTGGATATAGTTTCTATATGCCA
TTTACTTGCTGGAATTTGTTTCTACATGTAAAATATAACCTGAAATGAGTTTCTTTATGTCAAATACTTGCTGGATTTCA
TTTGTTTATGCTAAATACTTGCTGCATGTCTACTGGTTGATGTTGTTTTCTTTTTT-CTAGGACCACAAAGAGGATGAGC
CTTTTCTGAACAAGCCTCTCAAGCACTATAATGAGATGGCTATCATTCATGGCAATACTATGGCCACGGGTCAGTATACG
AAAGGCTGAAATGACCCCCTTGGCACAGAGGGCATAGAGGTGAATGACATTTCAGATAATGAGGCTTCCCCACTTGAAGA
AGGTAGCAAGTCAAGCAATGGAGGCGATTCAGTGGCTCCCAATCCCAAAAGGGCCAAAACAAAGTCTAGTGTTGATAAGG
GGCTGCAATCAACCCTTATGGCAGTGGGTGAAAGGCTTGCTATTGCCATAGAGAGGAGTGTTAGCACCGACAACAGCTCC
GCGAGCATCTCTACGAAC------------AA------------CTCTACGAACAAC------------TCCATGGTGGG
CCTTTGGGAGGGCATGAAAGATATTCCCTTTCTCGGTATTGATTACCTTGCCCATTATTTTGCCTACTTGGTTGAGAATC
CAAACATTGCAATGGCGTTTCAACTCTTGGAGAAGGACCAAAAGGGTATTTGGGTTGCTAGGTATGTGAAGAACACCTTC
CCTCCAATGGATAGTTGAAGATTGAAGGCATGTGTGGTATTTGCATGACCTCTTTTGATATGACCCAACATTGTGGACTT
TGGGTTGTATGACTTACTTTTGATG-CAACCAGACTATGAACTATGGGTTGTATAACTTAGAGATGATGTAATATTTCAT
ATCTACATCTCATGCACTACTAGTTTATTATGTATAGTTGCTACTTGTCTAAGATGTTGGACTA----TGATTATGAAGT
GGCACTT--CTATTTTCGAAATTATTGGTG-TTGACATGTTATGTTGGTCTGCGATATTAAAGTTTACTTATAAATTTCA
AAATCAAAGTTGAGCCCAGATTTGATATATCTATATTGCTGAAATTACATATTGGAGGGGTAAGCTCACCACCTCAAACA
AAATGGTGAGTGTAGCAATCATCCACTCTTTCATCCTCTCAACCAAACCCACAAATGGTTATCCCTAGCCACCTGTATCC
TCCCTACCAAACAAAATAATGTGGTTATCCAACTCACCTAATCCCTCACAACCAAACAACAA-AAAATGGCTATCCCCAG
CCACATGGTCAAGGATATCCTTAGCCAGGTATCTTTGCCCGTGAACCAAACGCCAC------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chrUn_696
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----------------------ATTTGTTTCTACATGTAAAATATAACCTGAAATGAGTTTCTT----------------
----------------------------------------------TATGCCAAATACTTGCTGGATTTCATTTGTTTAT
GCT-----------------------------------------------------------------------------
------------------------------------------------AAATAGTTGCTGGATATAGTTTCTATATGCCA
TTTACTTGCTGGAATTTGTTTCTACATGTAAAATATAACCTGAAATGAGTTTCTTTATGTCAAATACTTGCTGGATTTCA
TTTGTTTATGCTAAATACTTGCTGCATGTCTACTGGTTGATGTTGTTTTCTTTTTT-CTAGGACCACAAAGAGGATGAGC
CTTTTCTGAACAAGCCTCTCAAGCACTATAATGAGATGGCTATCATTCATGGCAATACTATGGCTACGGGTCAGTATACG
AAAGGCTCAAATGACCCCCTTGGCACAGAGGGCATAGAGGTGAATGACATTTCAGATAATGAGGCTTCCCCACTTGAAGA
AGGTAGCAAGTCAAGCAATGGAGGCGATTCAGTGGCTCCCAATCCCAAAAGGGCCAAAACAAAGTCTAGTGTTGATGAGG
GGCTGCAATCAACCCTTATGGCAGTGAGTGAAAGGCTTGCTATTGCCATAGAGAGGAGTGTTAGCACCGACAACAGCTCC
GCGAGCATCTCTATGAAC------------AA------------CTCTACGAACAAC------------TCCATGGTGGG
CCTTTGGGAGGGCATGAAAGATATTCCCTTTTTCGGTATTGATTACCTTGCCCATTATTTTGCCTACTTGGTTGAGAATC
CAAACATTGCAATGGCGTTTCAACTCTTGGAGAAGGACCAAAAGAGTATTTTGGTTGCTAGGTATGTGAAGAACACCTTC
CCTCCAATGGATAGTTGAAGATTGAAGGCATGTGTGGTATTTGCATGACCTCTTTTGATATGACCCAACATTGTGGACTT
TGGGTTGTATGACTTACTTTTGATG-CAACCAGACTATGAACTATAGGTTGTATAACTTAGAGATGATGTAATATTTCAT
ATCTACATCTCATGCACTACTAGTTTATTATGTATAGTTGCTACTTGTCTAAGATGTTGGACTA----TGATTATGAAGT
TGCACTT--CTATTTTCGAAATTATTGGTG-TTGACATGTTATGTTGGTCTGCGATGTTAAAGTTTACTTATAAATTTCA
AAATCAAAGTTGAGCCCAGATTTGATATATCTATATTGCTGAAATTACATATTGGAGGGGTAAGCTCACCACCTCAAACA
AAATGGTGAGTGTAACAATCATCCACTCTTTCATCCTCTCAACCAAACACACAAATGGTTATCCCT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chrUn_696
--------------------------------------------------------------------------------
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----------------------ATTTGTTTCTACATGTAAAATATAACCTGAAATGAGTTTCTT----------------
----------------------------------------------TATGCCAAATACTTGCTGGATTTCATTTGTTTAT
GCT-----------------------------------------------------------------------------
------------------------------------------------AAATAGTTGCTGGATATAGTTTCTATATGCCA
TTTACTTGCTGGAATTTGTTTCTACATGTAAAATATAACCTGAAATGAGTTTCTTTATGTCAAATACTTGCTGGATTTCA
TTTGTTTATGCTAAATACTTGCTGCATGTCTACTGGTTGATGTTGTTTTCTTTTTT-CTAGGACCACAAAGAGGATGAGC
CTTTTCTGAACAAGCCTCTCAAGCACTATAATGAGATGGCTATCATTCATGGCAATACTATGGCCACGGGTCAGTATACG
AAAGGCTCAAATGACCCCCTTGGCACAGAGGGCATAGAGGTGAATGACATTTCAGATAATGAGGCTTCCCCACTTGAAGA
AGGTAGAAAGTCAAGCAATGGAGGCGATTCAGTGGCTCCCAATCCCAAAAGGGCCAAAACAAAGCCTAGTGTTGATGAGG
GGCTGCAATCAACCCTTATGACAGTGGGTGAAAGGCTTGCTATTGCCATAGAGAGGAGTGTTAGCACCGACAACAGCTCC
GCGGGCAT------------------------------------CTCTACGAACAAC------------TCCATGGTGGG
CCTTTGGGAGGGCATGAAAGATATTCCCTTTTTTGGTATTGATTACCTTGCCCATTATTTTGCCTACTTGGTTGAGAATC
CAAACATTGCAATGGCGTTTCAACTCTTGGAGGAGGACCAAAAGAGTATTTGGGTTGCTAGGTATGTGAAGAACACCTTC
CCTCCAATGGATAGTTGAAGATTGAAGGCATGTGTGGTATTTGCATGACCTCTTTTGATATGACCCAACATTGTGGACTT
TGGGTTGTATGACTTACTTTTGATG-CAACCAGACTATCAACTATGGGTTGTATAACTTAGAGATGATGTAATATTTCAT
ATCTACATCTCATGCACTACTAGTTTATTATGTATAGTTGCTACTTGTCTAAGATGTTGGACTA----TGATTATGAAGT
TGCACTG--CTATTTTCGAAATTATTGGTG-TTGACATATTATGTTGGTCTGCGATGTTAAAGTTTACTTATAAATTTCA
AAATCAAAGTTGAGCCCAGATTTGATATATCTATATTGCTGAAATTACATATTGGAGGGGTAAGCTCACCACCTCAAACA
AAATGGTGAGTGTAACAATCATCCACTCTTTCATCCTCTCAACCAAACACACAAATGGTTATCCCT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr6D_696
--------------------------------------------------------------------------------
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----------------------ATTTGTTTCTACATGTAAAATATAACCTGAAATGAGTTTCTT----------------
----------------------------------------------TATGCCAAATACTTGCTAGATTTCATTTGTTTAT
GCT-----------------------------------------------------------------------------
------------------------------------------------AAATAGTTGCTGGATATAGTTTCTATATGCCA
TTTACTTGCTGGAATTTGTTTCTACATGTAAAATATAACCTGAAATGAGTTTCTTTATGTCAAATACTTGCTGGATTTCA
TTTGTTTATGCTAAATACTTGCTGCATGTCTACTGGTTGATGTTGTTTTCTTTTTT-CTAGGACCACAAAGAGGATGGGC
CTTTTCTGAACAAGCCTCTCAAGCACTATAATGAGATGGCTATCATTCATGGCAATACTATGGCCACGGTTCAGTATACG
AAAGGCTCAAATGACCCCCTTGGCACAGAGGGCATAGAGGTGAATGACATTTCAGATAATGAGGCTTCCCCAGTTGAAGA
AGGTAGCAAGTCAAGCAATGGAGGCGATTCAGTGGCTCCCAATCCCAAAAGGGCCAAAACAAAGTCTAGTGTTGATGAGG
GGCTGCAATCAACCCTTATGGCAGTGGGTGAAAGGCTTGCTATTGCCATAGAGAGGAGTGTTAGCACCGACAACAGCTCC
GCGAGCAT------------------------------------CTCTACGAACAACTCTACGAACAACTCCATGGTGGG
CCTTTGGGAGGGCATGAAAGATATTCCCTTTTTCGGTACTGATTACCTTGCCCATTATTTTGCCTACTTGGTTGAGAATC
CAAACATTGCAATGGCGTTTCAACTCTTGGAGAAGGACCAAAAGAGTATTTGGGTTGCTAGGTATGTGAAGAACACCTTC
CCTCCAATGGATAGTTGAAGATTGAAGGCATGTGTGGTATTTGCATGACCTCTTTTGATATGACCCAACATTGTGGACTT
TGGGTTGTATGACTTACTTTTGATG-CAACCAGACTATGAACTATGGGTTGTATAACTTAGAGATGATGTAATATTTCAC
ATCTGCATCTCATGCACTACTAGTTTATTATGTATAGTTGCTACTTGTCTAAGATGTTGGACTATATGTGATTATGAAGT
TGCACTT--CTATTTTCGAAATTATTGGTG-TTGACATGTTATGTTGGTCTGCGATGTTAAAGTTTACTTATAAATTTCA
AAATCAAAGTTGAGCCCAGATTTGATATATCAATATTTCTGAAATTACATATTGGAGGGGTAAGCTCACCACCTCAAACA
AAATGGTGAGTGTAACAATCATCCACTCTTTCATCCTCTCAACCAAACACACAAATGGTTATCCCTAGCCACCTGTAAAC
TCCCTACCAAACAAAATAATGTGGTTATCCAACTCACCTAATCCCTCACAACCAAACAACAA-AAAATGGCTATCCCCAG
CCACATGGTTAAGGATATCCTTAGCCAGGTATCTTTGCCCGTGAACCAAACGCCAC------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr5A_794
--------------------------------------------------------------------------------
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-------------------------------------------------------------------TTTGTCTATGCCA
AATAATTGTTGGAATTTGTTTCTATATGTGAAATACAACCTGGAATGAGTTTCTTAATGTGAACAACTTGCTGGAATTTG
TTTATTTGTGGCTAATACTTGTAGTAATACTACTTGTTGAAGTTGTTTCGTTTTTT-CTAGACCAATAAAGAGGATGCGC
CTTTTCTCAACAAGACTCCGAAGCACTATAAAGAGATGTCTATCATTCATGGTAGTAGTATGGCCACAGGTCAATATGCA
GATGGCTCAAATGATCCTCTATCT---------ATAGAGGTGAATGAAATTTTATATAATGAAGCTTCCC-ACTTAACGA
AGGTAGCAAATCTCACAATG---GCAACTCTTTGGATCCCAATCCAAAAAGAGCAAAAACCAGGCCTAGTGTTGATAAGG
GCTTGCAGCCGACCCTTATGCCAGTGGGTGAAAGGCTTGCTATTGCCATAGAGAAGAGTGTTGGTACCGAAAAA------
------ATCTCTACGAAC------------AT------------CTCTTCGAACAAC------------TCGATGGTGGG
ACTTTGGGAGGGCATGAAAGATCTTCTCCTTTTCTATTTGGTTTTCCTTGCA-ATTATTTTGCCTACTTGGTTGAGAATT
CTGACATTACAATGGCATTTCAGCTGTTGGAGAAGGACCATAAGAGTATTTGGGTTGCTAGGT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr5D_1387
CTTC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------GGTTGAGAATC
CAAAGATTGCAATGGCGTTTCAACTCTTGGAGAAGGACCAAAAGAGTATTTGGGTTGCTAGGTATGTGAAGAACGCCTTC
CCTCCAATGGATGGTTGAAGATTGAAGGCATGTGTGGTATTTGCATGACCTCTTTTGATATGACCAAACAATATGGACTT
TGGGTTGTATGACTTACTTTTGATGTCAACCAGACTATGAACTATGGGTTGTATAACTTAGAGATGATGTACTATTTCAT
ATCTACATCTCATGCACTACTAGTTTATTATGTATAGTTGCTACTTGTCTAAGATGTTGGACTA----TGATTATGAAGT
TGCACTTTCCTATTTTTGAAATTATTGGTG-TTGACATGTTATGTTGGTCTGTGATGTTAAAGTTTACTTCTAAATTTCA
AAATCAAAGCTAAGCCCAGATTTGATATATCTATATTGCTGAAATTACATATTGGAGGGATAATCTCACCACCTCATACA
AAATGGTGAGTGTAACAATCATCCACTCTTTCATCCTCTCAACCAAACACACAACTGGTTATCCCTAGCCACCTGTATCC
TCCCTACCAAACAAAATAATGTGGTTATCCAACTCACCTAATCCCTCACAACCAAACAACAACAAAATGGCTATCCCCAG
CCACATGGTTAAGGATATCCTTAGCTAGGTATCTTCGCTCGTGAACCAAACGCCAC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>SNPs
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
-------------------------S--SSSSSSSSSS------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
----------------S-------------------------------S---------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
-----------------------S----------------------------------------------S---------
--------------------------------------------------------------------------------
------------------------------S-------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------SSSSSSSSSSSS------------------------------------
----------------S----------------------------------------------S----------------
---------------------------------------------------------S-----S----------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
----------------------------------------------------S----------S----------------
--------------------------------------------------------------------------------
-------------S-------------S----------------------------------------------------
--------------------------------------------------------S-----------------------
------------------------S-----------S------------------------------S------------
---------------------------------------S----------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_390
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TTTACCCCGGCCTCTGCATC----------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_3252
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------TGGCGTTTCCAGTACGTGAA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
