>input_sequence_78237
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-------------------------------------------ATGGGCCGCAGTGCAATTGCAAAATCAACTGGTCTTC
TCCGGTAAGTAGCCTCTAGCATCCCTCTAAACCTGCAATAATGAAGCTTTCAATTTGGTAGATTCCAGAACGATGACATT
CAAGCATTACTGTAATCTAAAGATTGTTCATATCCTAGTGAAGAGAAACTTGAATTGCTAAATGCAACATCATTATGCTG
ATATGCTTCATAAAGTAACTGCCTGGATTGTGATATGCAGGGAAGTTAAGAACAGGCAAAGCTCTAACCTTACGAGCCGG
GTGCAGCCAACAAAAGCAAGGTCGGCAGAGACAGCACTGTGGGTGCCACACCCAAGGACAGGGATCTACTACCCCAGGGG
CTTTGAGTGGGTCATGGAGGATGTCCCAAGCAGCGCAGCAACGTTCCAGCAGACATACTGGCTCAGGAGCGGCGACGCAG
AGACAGCAAGCTCCCCCACATCAACCGACGGCACAGCTGCCTTTGATAATCCATTTCTGTGA------------------
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>chr5D_1_TraesCS5D01G115700
AAAAAATCTTATTCTCTTTTTCTTGCCCTCTATCACTCTATGACTCCAATGTCAAATCTGAAGGGAAGAACTTACTCTCC
ACTCTGCCGCACG-AAGAGACAAGCAACTGAAATGCTTCATCTTTAGTTCTGCACCACAGCTATGCATCCCTCAAGGAGT
ATCAGATCCCATACCCTCCATTAT--TCTGCTGAAGGATCATTAATGATGTATACAGAAAATATATGGGGAAGATGGATC
AGGTCATGAGACACCATACGCGCAAGTTCTTCTGATGCCACAGACTGCACAATATCCCGCAGGCAGGCAAACACATATCT
CTCATGAGAGTTTGTGGCTCGAAATCAGCAAAGGAAGTCTCAACAGATGTATAATCTGCCTGAATCCATCTATCACTGGG
GTCCACATATCAGTTGCTTCTCATACGTATTAAGGAGTTCATAATAAGTTTGTGGCAGACAACATCCTTTGCAACCAGAC
AAGCAGAGATTTGAGAACGAAAATTCCGTAACTGCTTTTCTTCAAGCTGTGTTCCTATCTCCTCTCCCTTTCTTCATGTG
AGAACTGTATTCCTTCGTTGCTAACAAGGTACAACCAGCACCAGTAGGGCTGTCTCATGATTCTCCAAGTAGAAACAGTT
ACTGCCATAGGACAGTACTTGGCCAGATTTGACTTCAGATTCTAGGAGCATCAGTTCTCATGGTGTTTGGTCCAATGGTG
TCCAATCAAGCTCAAACCTCTGCTCAAGTAGAAGCCAACGACTGTGAATAAAATCGTTCATGATCCTCTGTAGGAGCTTG
TCAAATCATTCATATCCTACCAGATGTGCAGTCCGTGTGACCCTGACCATGGTGGTAGCGTTCCAACTAGAAAACTACAG
CTATATATACCAGGGTTGGGGAGGAGAGAGGTGCCAACCAAGAGGGAACTGCCATCGGCTGCTTGACACCAAGGAGGAAA
GAACAAACAGCAGCAGATTTTAGCGCCTCCCCAGCCTTTGTTGATGGGCCGCAGTGCAATTGCAAAATCAACTGGTCTTC
TCCGGTAAGTAGCCTCTAGCATCCCTCTAAACCTGCAATAATGAAGCTTTCAATTTGGTAGATTCCAGAACGATGACATT
CAAGCATTACTGTAATCTAAAGATTGTTCATATCCTAGTGAAGAGAAACTTGAATTGCTAAATGCAACATCATTATGCTG
ATATGCTTCATAAAGTAACTGCCTGGATTGTGATATGCAGGGAAGTTAAGAACAGGCAAAGCTCTAACCTTACGAGCCGG
GTGCAGCCAACAAAAGCAAGGTCGGCAGAGACAGCACTGTGGGTGCCACACCCAAGGACAGGGATCTACTACCCCAGGGG
CTTTGAGTGGGTCATGGAGGATGTCCCAAGCAGCGCAGCAACGTTCCAGCAGACATACTGGCTCAGGAGCGGCGACGCAG
AGACAGCAAGCTCCCCCACATCAACCGACGGCACAGCTGCCTTTGATAATCCATTTCTGTGAATGCATAAGAGGCTTCAC
ACTGGAAGAATCACTGATAGCAGCAGTTCTACAAGCCACCACCATTGTTGCCAGGTCGATACATAATATGATAAACCAGC
TGCTCAGTTTTCCAGCATGTAGGCACCGCATCCACCGAAAGATCAGTGTTAAACTCTGCATTAATCTTCACTATTGCATT
CTCATTTTCACTGATTTTACTTAAATAAAAGCCGCACCTGATTGTAATATTTGGAACATTCTGAGCTAACAGTTTTAACT
GTCAACCTTGTTGCAAAAGTTATCCTACTAATTATAATCTTCAGAAAAAATAATACAGCCTTCAGTTTTGTTTCCCCTTG
TAGGGAAGAAATTATGCAGGGGAGTCAAGAGTTCACAACAGTGCTCAATGTTTTTATGCATTTTTT---------AGATT
GTGATTAACCATATCCAGACATAATGCACTGCACACAC----TGAACTGCGGGTACTTAACAAGAGTAACAATAAACACT
TGCAGGGTGTACCCAACCAAGAGAATGTTAATGGACAATATTAGCCAAATATAAAGACCATTATCCGAAACGAAAAAAGT
ACCATGGATTATCCTCATTATGTTACCATGAAAACGTCCAAGTTCATCAAAACATCAAAATGCTTTCAAACAACTTTCCA
GGTAGACAATTGACTACAATCAAGGGGGCAATGGTAACATTGCCTGTGCCAATTGTATGATCGCAGCTATACTAGCCATA
AGGACGAGACTTTTCAA---------------CAAGCTTTGGTGCTTCATCTCCTTCAGACTTTTTCTGAAACTCAATGC
CCTGAAACTGGACCCTTGAAGATCGATATTGACAACCATAAGCATTTCCAAAGCCCCATCCTAAACCAAGACCAACTCCG
CATCCCCCACCTATTCACAAAGAGGAAATTCAATTCAGTACCAATTTACTCTAGATGATG------TGTATATAGTAACT
GATAAGCTTTGTACCAATGCCCAAGCCGAATACGTTCAGAGGCATTCCTGTGGTAG
>chr5A_1
AAAAAATCTTATTCTCTTTTTCTTGCCCTCTATCACTCTATGACTCCAATGTCAAATCTGATGGGAAGAACTTACTCTCC
ACTCCGCCGCACG-AAGAGACAAGCAACTGAAATGCTTCATCTTTAGTTCTGCACCACAGCTATGCATGCTTCAA--AGT
ATCAGATCCCATGCCCTCCATTAT--TCTGCTAATGGATCATTAATGATGCAGACAAAAATTATATGGGGAAGATGGATC
AGGTCATGAGACACCGTACGCGCAAG-------GATGCCACAGACTGCACAATATCCCGCAGGCAGGCAAACACATATAT
CTCATGAGAGTGTGTGGCTCGAAATCAGCAAAGGAAGTCTCAACAGATGTATAATCTGCCTGACTCCATCTATCACTGGG
GTCCACATGTCGGTTGCTTCTCATGCGTATCAAGGAGTTCAAAATAAGTTCATGGCAGACAAAATCCTTTGCAACCAGAC
AAGCAGAGATTTTAGCTCGGAAATTCTGTAATTGCTTTTCTTCAAGCTGTGTTCCCATCTCTTCTCCCTACT--------
---------------------------GGTACAACCAGCACCAGTAGGGCTGTCTCATGATTCTCCAAGTAGATACGG-T
ACTGCCATAGGACAGTACTTGGCCAGATTTGACTTCAGATTCTAGGAGCATCAGTTCTCATGGTGTTTGGTCCAATGGTG
TCCAATCAAGCTCAAACCTCTGCTCAAGTAGAAGCCAACGACTATGAATAAAATCGTTCATGATCCTCTGCAGGAGCTTG
TCAAATCATTCATATCCTATCAGATGTGCAGTCCGTGTGACCCTGACCATGGTGGCAGAGTTCCAACTAGAAAACTCTAG
CTATATATACCAGGGTTGGGGAGAAGAGAGGTACCAACCAAGAGGGAACTGCCATCGGTTGCTTGACCCCAAGGAGGAAA
GAACAAACAGTAGCAGATTTTAGTGCCTCCCCAGCCTTTGTTGATGGGCCGCAGTGCAATTGCAAAATCGACTGGTCTTC
TCCGGTAAGTAGCCTCTAGCATCCCTCTAAACCTGCAATACTGAAGCTTTCAATTTGGTAGATTCCAGAACGATGACATT
CAAGCATTACTGTAGTCCAAAGATTGTTCATATCCTAGTGAAGAGAAACTTGAATTGCTAAATGCAACATCATTATGCTG
ATATGCTCCATAAAGTAACTGCTTGGATTGCCATATGCAGGGAAGTTAAGAACAGGCAAAGCTCTAACCTTACGAGCCAG
GTGCAGCCAACAAAAGCAAGGTCAGCAGAGACAGCACTGTGGGTGCCACACCCAAAGACAGGGATCTACTACCCCAGGGG
CTTTGAGTGGGTCATGGAGGATGTCCCAAGCAGCGCAGCAACGTTCCAGCAGACATACTGGCTCAGGAGCGGCGACGCAG
ACACAGCAAGCTCTCCCACGTCAACCGACGGCACAGCTGCCTTTGATAATCCATTTCTGTGAATGCATAAGAGGCCTCAC
ACTGGAAGAATCACTGATAGCAGCAGTTCTACAAGCCACCACCATTGTTGCCAGGTCGATACATAATATGATAAACCAGC
TGCTCAGATTTCCAGCATGTAGGCACCGCATCCACCGAAAGATCAGTGTTAAACTCTGCATTAATCTTCGCTATTGCATT
CTCATTTTCACTGATTTTACTTAAATAAAAGCCGCACCTGATTGTAATATTGGGAACATTCTGAGCTAACAGTTTTAACT
GTCAACCTTGGTGCAAAAATTATCCTACTAATTATAATCTTCAGATAAAATAATACAGCCTTCAGTTTTGTTTCGCCTTG
TAGGGAAGAAATTATGCAGGGGAGTCAAGAGTTCACAACAGAGCTCAATGTTTGTATGCATTTTCTATTTCAGCTAGATT
GTAATTAACCATATCCAGACATAATGCACTACACACACTAAGTGAACTGCAGGTACTTAACAAGAGTAACAATAAAAACT
TGCAGGGTGCACCCAACCAAGAGAATGTTAATGGACAATTTTAGCCAAATATAAAGACCATTATCCGAAACGGAAAAAGT
ACCATGGATTATCCTCGTTATGTTACTATGAAAACGTCCAAGTTCATCAAAACATCAAAATGCTTTGAAACAACTTTCCA
GGTAGACAATTGACTACAATCAAGCGGACAATGGTAACATTGCCTGTGCCAATTGTATGATCGCAGCTATACTAGCCATA
AGGACGAGACTTTTCAA---------------CAAGCTTTGGTGCTTCATCTCCTTCAGACTTTTTCTGAAACTCAATGC
CCTGAAACTGGACCCTTGAAGATCGATATTGACAACCATAAGCATTTCCAAAGCCCCATCCTAAACCAAGACCAACTCCG
CATCCCCCACCTATTCACAAAGAGGAAATTCAATTCAGTACCAATTTACTCTAGATGATG------T--ATATAGTAACT
GACAAGCTTCGTACCGATGCCCAAGCCGAATACGTTCAGAGGCATTCCTGTGGTAG
>chr5B_2
-AAAAACCTTATTCTCTTTTTCTTGCCCTCTATCACTCTATGACTCCAATGTCAAATCTGAAGGAAAGAACTTAGTCTCC
AATCCGCCGCACGAAAGAGACAAGCAACTGAAATGCTTCATCTTTAGTTCTGCACCACAGCTATGCATCCTTCAAGGAGA
ATCAGATCCCATACTCTCCATTATATTCTGCTAATGGATCATTAATGATGCAGACAAAAATTATATGGGGAAGATGGATC
AGGTCACGAGACACCGTACGCGCAAGTTCTTCTGATGCCACAGACTGCACAATATCCCGCAGGCAGGCAAACACATATCT
CTCATGAGAGTTTGTGGCTCGAAATCAGCGAAGGAAGACTCAACAGATGTATAATCTGCCTGAATCCATCTATCACTGGG
GTCCACATGTCGGTTGCTTCTCATGCGTATTAAGGAGTTCAAAATAAGTTCATGGCAGACAACATCCTTTGCAACCAGAC
AAGCAGAGATTTTAGCTCGGAAATTCTGTAATTACTTTTCTTCAAGCTGTGTTCCCATCTCTTCTCCCTTTCTTCACGAA
--AACTGTATTCCTTCGTTGCTAACAAGGTACAACCAGCACCAGTAGGGCTGTCTCATGATTCTCCAAGTAGAAACAG-T
ACTGCCATAGGACAGTACTTGGCCAGATTTGACTTCAGATTCTAGGAGCATCAGTTCTCATGGTGTTTGGTCCATTGGTG
TCCAATCAAGCTCAAACCTCTGCTCAAGTAGAAGCCAACGACTGTGAATAAAATCGTTCATGATCCTCTGTAGGAGCTTG
TCAAATCATTCATATCCTACCAGATGTGCAGTCCGTGTGACCCTTGCCATGGTGGTAGCGTTCCAAGTAGAAAACTACAG
CTATATATACCAGGGTTGGGGAGGAGAGAGGTACCAACCAAGAGGGAACTGCCATCGGTTGCTTGACCCCAAGGAGGAAA
GAACAAACAGTAGCAGATTTTAGCGCCTCCCCAGCCTTTGTTGATGGGCCGCAGTGCAATTGCAAAATCGACTGGTCTTC
TCCGGTAAGTAGCCTCTAGCATCCCTCTAAACCTGCAATA---------------TGGTAGATTCCAGAACGATGACATT
CAAACATTACTGTAATCTAAAGATTGTTCATATCCTAGTGATGAGAAACTTGAATTGCTAAATGCAACATCATTATGCTG
ATATGCTCCATAAAGTAACTGCCTGGATTGTGATATGCAGGGAAGTTAAGAACAGGCAAAGCTCTAACCTTACGAGCCGG
GTGCAGCCAACAAAAGCAAGGTCGGCAGAGACAGCACTGTGGGTGCCACACCCAAGGACAGGGATCTACTACCCCAGGGG
CTTTGAGTGGGTCATGGAGGATGTCCCAAGCAGCGCAGCAACGTTCCAGCAGACATACTGGCTCAGGAGCGGCGACGCAG
AGACAGCAAGCTC-CCCACGTCAACCGACGGCACAGCTGCCTTTGATAACCCATTTCTGTGAATGCATAAGAGGCCTCAC
ACTGGAAGAATCACTGATAGCAGCAGTTCTACAAGCCACCACCATTGTTGCCAGGTCGATACATAATATGATAAACCAGC
TGCTCAGATTTCCAGCATGTAGGCACCGCATCCACCGAAAGATCAGTGTTAAACTCTGCATTAATCTTCTCTATTGCATT
CTCATTTTCACTGATTTTACTTAAATAAAAGCCGCACCTGATTGTAATATTTGGAACATTTTGAGCTAACAGTTTTAACT
CTCAACCTTGTTGCAAAAATTAGCCTACTAATTATAGTCTTCAGAAAAAAAAATACAGCCTTCAGTTTTGTTTCCCCTTG
TAGGGAAGAAATTATGCAGGGGAGTCATGAGTTCACAATAGTGCTCAATGTTTTTATGCACATTCTATTACAACAAGATT
GTAATTAACCATATCCAGACATAATGCACTACACACA-TAAGTGAATTACAGGTACTTAACAAGAGTAACAACAAACACT
TGGAGGGTGCACCCAACCAAGAGAATGTTAATGGACAATATTAGCCAAATATGAAGACCGTAATCCGAAACGAAAACAAT
A-CATGGATTATCCTCATTCTGTTACTATGAAAATGTCCAAGTTCATCAAAACATCAAAATGCTTTCAAACAACTTTCCA
GGTAGACAATTGACTACAATCAAGGGGGCAATGGTAACATTGCCTGTGCCAAATGTATGATCGCAGCTATACTAGCCATA
AGGACGAGACTTTTCAACAAGCCCTGGCGAAGCAAGCTTTGGTGCTTCATCTCCTTCAGACTTTTTCTGAAACTCAATGC
CCTGAAACTGGACCCTTGAAGATCGATATTGACAACCATAAGCATTTCCAAAGCCCCATCCTAACCCAAGACCAACTCCG
CATCCCCCACCTATTCAGAAAGAGGAAATTCAATTCAGTGCCAATTTACTCTAGATGATGTAGTTCT--ATATAGTAACT
GATAAGCTTTGTACCGATGCCCAAGCCGAATACGTTCAGAGGCATTCCTGTGGTAG
>SNPs
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----S-----------------------------------------------------------------S---------
--------------------------------S-S---------------S-S---S---S-------------------
---------------S----------------------------------------------------------------
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--------S--S------------S----------------S--------SS----------------------------
------------S--SS--S------S----S-----------------------S-----S--------------S-SS
SS----------------------------------------------------------------------------S-
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--------------------------------S-------------------------S--------S------------
----------S----------------------------------------------------------S----------
----------------------------------------S---------------------------------------
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-------S------------------------------------------------------------------------
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-------------S-----S-------------------------------------------------------S----
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-------S-------------------------------------------------------------S----------
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------------------S-------------------------------------------------------------
----------------------------------------------------------------S---------------
--S---------------------------S-------------------S-----------------------------
---------S----------------------------------------------------------------------
--------------------------S-----------------------------------------------------
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-------------------------------------------------------------------SS-----------
---------------S----------------------------------------
>forward_913
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-------------GGTTGGGGAGGAGAGAGGTG-----------------------------------------------
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>reverse_2496
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---------------AATGCCCAAGCCGAATACGT---------------------
