>input_sequence_78236
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-----------ATGGGCCGCAGTGCAATTGCAAAATCGACTGGTCTTCTCCGGTAAGTAGCCTCTAGCATCCCTCTAAAC
CTGCAATACTGAAGCTTTCAATTTGGTAGATTCCAGAACGATGACATTCAAGCATTACTGTAGTCCAAAGATTGTTCATA
TCCTAGTGAAGAGAAACTTGAATTGCTAAATGCAACATCATTATGCTGATATGCTCCATAAAGTAACTGCTTGGATTGCC
ATATGCAGGGAAGTTAAGAACAGGCAAAGCTCTAACCTTACGAGCCAGGTGCAGCCAACAAAAGCAAGGTCAGCAGAGAC
AGCACTGTGGGTGCCACACCCAAAGACAGGGATCTACTACCCCAGGGGCTTTGAGTGGGTCATGGAGGATGTCCCAAGCA
GCGCAGCAACGTTCCAGCAGACATACTGGCTCAGGAGCGGCGACGCAGACACAGCAAGCTCTCCCACGTCAACCGACGGC
ACAGCTGCCTTTGATAATCCATTTCTGTGA--------------------------------------------------
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>chr5A_1_TraesCS5A01G105300
TCTATTGCTACGACACCGATGCACGCAACATCTAAAATTATGAG---AAAAAAATCTTATTCTCTTTTTCTTGCCCTCTA
TCACTCTATGACTCCAATGTCAAATCTGATGGGAAGAACTTACTCTCCACTCCGCCGCACG-AAGAGACAAGCAACTGAA
ATGCTTCATCTTTAGTTCTGCACCACAGCTATGCATGCTTCAA--AGTATCAGATCCCATGCCCTCCAT--TATTCTGCT
AATGGATCATTAATGATGCAGACAAAAATTATATGGGGAAGATGGATCAGGTCATGAGACACCGTACGCGCAAG------
-GATGCCACAGACTGCACAATATCCCGCAGGCAGGCAAACACATATATCTCATGAGAGTGTGTGGCTCGAAATCAGCAAA
GGAAGTCTCAACAGATGTATAATCTGCCTGACTCCATCTATCACTGGGGTCCACATGTCGGTTGCTTCTCATGCGTATCA
AGGAGTTCAAAATAAGTTCATGGCAGACAAAATCCTTTGCAACCAGACAAGCAGAGATTTTAGCTCGGAAATTCTGTAAT
TGCTTTTCTTCAAGCTGTGTTCCCATCTCTTCTCCCTACT-----------------------------------GGTAC
AACCAGCACCAGTAGGGCTGTCTCATGATTCTCCAAGTAGATACGG-TACTGCCATAGGACAGTACTTGGCCAGATTTGA
CTTCAGATTCTAGGAGCATCAGTTCTCATGGTGTTTGGTCCAATGGTGTCCAATCAAGCTCAAACCTCTGCTCAAGTAGA
AGCCAACGACTATGAATAAAATCGTTCATGATCCTCTGCAGGAGCTTGTCAAATCATTCATATCCTATCAGATGTGCAGT
CCGTGTGACCCTGACCATGGTGGCAGAGTTCCAACTAGAAAACTCTAGCTATATATACCAGGGTTGGGGAGAAGAGAGGT
ACCAACCAAGAGGGAACTGCCATCGGTTGCTTGACCCCAAGGAGGAAAGAACAAACAGTAGCAGATTTTAGTGCCTCCCC
AGCCTTTGTTGATGGGCCGCAGTGCAATTGCAAAATCGACTGGTCTTCTCCGGTAAGTAGCCTCTAGCATCCCTCTAAAC
CTGCAATACTGAAGCTTTCAATTTGGTAGATTCCAGAACGATGACATTCAAGCATTACTGTAGTCCAAAGATTGTTCATA
TCCTAGTGAAGAGAAACTTGAATTGCTAAATGCAACATCATTATGCTGATATGCTCCATAAAGTAACTGCTTGGATTGCC
ATATGCAGGGAAGTTAAGAACAGGCAAAGCTCTAACCTTACGAGCCAGGTGCAGCCAACAAAAGCAAGGTCAGCAGAGAC
AGCACTGTGGGTGCCACACCCAAAGACAGGGATCTACTACCCCAGGGGCTTTGAGTGGGTCATGGAGGATGTCCCAAGCA
GCGCAGCAACGTTCCAGCAGACATACTGGCTCAGGAGCGGCGACGCAGACACAGCAAGCTCTCCCACGTCAACCGACGGC
ACAGCTGCCTTTGATAATCCATTTCTGTGAATGCATAAGAGGCCTCACACTGGAAGAATCACTGATAGCAGCAGTTCTAC
AAGCCACCACCATTGTTGCCAGGTCGATACATAATATGATAAACCAGCTGCTCAGATTTCCAGCATGTAGGCACCGCATC
CACCGAAAGATCAGTGTTAAACTCTGCATTAATCTTCGCTATTGCATTCTCATTTTCACTGATTTTACTTAAATAAAAGC
CGCACCTGATTGTAATATTGGGAACATTCTGAGCTAACAGTTTTAACTGTCAACCTTGGTGCAAAAATTATCCTACTAAT
TATAATCTTCAGATAAAATAATACAGCCTTCAGTTTTGTTTCGCCTTGTAGGGAAGAAATTATGCAGGGGAGTCAAGAGT
TCACAACAGAGCTCAATGTTTGTATGCATTTTCTATTTCAGCTAGATTGTAATTAACCATATCCAGACATAATGCACTAC
ACACACTAAGTGAACTGCAGGTACTTAACAAGAGTAACAATAAAAACTTGCAGGGTGCACCCAACCAAGAGAATGTTAAT
GGACAATTTTAGCCAAATATAAAGACCATTATCCGAAACGGAAAAAGTACCATGGATTATCCTCGTTATGTTACTATGAA
AACGTCCAAGTTCATCAAAACATCAAAATGCTTTGAAACAACTTTCCAGGTAGACAATTGACTACAATCAAGCGGACAAT
GGTAACATTGCCTGTGCCAATTGTATGATCGCAGCTATACTAGCCATAAGGACGAGACTTTTCAA---------------
CAAGCTTTGGTGCTTCATCTCCTTCAGACTTTTTCTGAAACTCAATGCCCTGAAACTGGACCCTTGAAGATCGATATTGA
CAACCATAAGCATTTCCAAAGCCCCATCCTAAACCAAGACCAACTCCGCATCCCCCACCTATTCACAAAGAGGAAATTCA
ATTCAGTACCAATTTACTCTAGATGATGT------ATATAGTAACTGACAAGCTTCGTACCGATGCCCAAGCCGAATACG
TTCAGAGGCAT
>chr5D_1
TCTATTGCTACGACACTGATGCATGCAACATCTAAAATTATGAGGAAAAAAAAATCTTATTCTCTTTTTCTTGCCCTCTA
TCACTCTATGACTCCAATGTCAAATCTGAAGGGAAGAACTTACTCTCCACTCTGCCGCACG-AAGAGACAAGCAACTGAA
ATGCTTCATCTTTAGTTCTGCACCACAGCTATGCATCCCTCAAGGAGTATCAGATCCCATACCCTCCAT--TATTCTGCT
GAAGGATCATTAATGATGTATACAGAAAATATATGGGGAAGATGGATCAGGTCATGAGACACCATACGCGCAAGTTCTTC
TGATGCCACAGACTGCACAATATCCCGCAGGCAGGCAAACACATATCTCTCATGAGAGTTTGTGGCTCGAAATCAGCAAA
GGAAGTCTCAACAGATGTATAATCTGCCTGAATCCATCTATCACTGGGGTCCACATATCAGTTGCTTCTCATACGTATTA
AGGAGTTCATAATAAGTTTGTGGCAGACAACATCCTTTGCAACCAGACAAGCAGAGATTTGAGAACGAAAATTCCGTAAC
TGCTTTTCTTCAAGCTGTGTTCCTATCTCCTCTCCCTTTCTTCATGTGAGAACTGTATTCCTTCGTTGCTAACAAGGTAC
AACCAGCACCAGTAGGGCTGTCTCATGATTCTCCAAGTAGAAACAGTTACTGCCATAGGACAGTACTTGGCCAGATTTGA
CTTCAGATTCTAGGAGCATCAGTTCTCATGGTGTTTGGTCCAATGGTGTCCAATCAAGCTCAAACCTCTGCTCAAGTAGA
AGCCAACGACTGTGAATAAAATCGTTCATGATCCTCTGTAGGAGCTTGTCAAATCATTCATATCCTACCAGATGTGCAGT
CCGTGTGACCCTGACCATGGTGGTAGCGTTCCAACTAGAAAACTACAGCTATATATACCAGGGTTGGGGAGGAGAGAGGT
GCCAACCAAGAGGGAACTGCCATCGGCTGCTTGACACCAAGGAGGAAAGAACAAACAGCAGCAGATTTTAGCGCCTCCCC
AGCCTTTGTTGATGGGCCGCAGTGCAATTGCAAAATCAACTGGTCTTCTCCGGTAAGTAGCCTCTAGCATCCCTCTAAAC
CTGCAATAATGAAGCTTTCAATTTGGTAGATTCCAGAACGATGACATTCAAGCATTACTGTAATCTAAAGATTGTTCATA
TCCTAGTGAAGAGAAACTTGAATTGCTAAATGCAACATCATTATGCTGATATGCTTCATAAAGTAACTGCCTGGATTGTG
ATATGCAGGGAAGTTAAGAACAGGCAAAGCTCTAACCTTACGAGCCGGGTGCAGCCAACAAAAGCAAGGTCGGCAGAGAC
AGCACTGTGGGTGCCACACCCAAGGACAGGGATCTACTACCCCAGGGGCTTTGAGTGGGTCATGGAGGATGTCCCAAGCA
GCGCAGCAACGTTCCAGCAGACATACTGGCTCAGGAGCGGCGACGCAGAGACAGCAAGCTCCCCCACATCAACCGACGGC
ACAGCTGCCTTTGATAATCCATTTCTGTGAATGCATAAGAGGCTTCACACTGGAAGAATCACTGATAGCAGCAGTTCTAC
AAGCCACCACCATTGTTGCCAGGTCGATACATAATATGATAAACCAGCTGCTCAGTTTTCCAGCATGTAGGCACCGCATC
CACCGAAAGATCAGTGTTAAACTCTGCATTAATCTTCACTATTGCATTCTCATTTTCACTGATTTTACTTAAATAAAAGC
CGCACCTGATTGTAATATTTGGAACATTCTGAGCTAACAGTTTTAACTGTCAACCTTGTTGCAAAAGTTATCCTACTAAT
TATAATCTTCAGAAAAAATAATACAGCCTTCAGTTTTGTTTCCCCTTGTAGGGAAGAAATTATGCAGGGGAGTCAAGAGT
TCACAACAGTGCTCAATGTTTTTATGCATTTTTT---------AGATTGTGATTAACCATATCCAGACATAATGCACTGC
ACACAC----TGAACTGCGGGTACTTAACAAGAGTAACAATAAACACTTGCAGGGTGTACCCAACCAAGAGAATGTTAAT
GGACAATATTAGCCAAATATAAAGACCATTATCCGAAACGAAAAAAGTACCATGGATTATCCTCATTATGTTACCATGAA
AACGTCCAAGTTCATCAAAACATCAAAATGCTTTCAAACAACTTTCCAGGTAGACAATTGACTACAATCAAGGGGGCAAT
GGTAACATTGCCTGTGCCAATTGTATGATCGCAGCTATACTAGCCATAAGGACGAGACTTTTCAA---------------
CAAGCTTTGGTGCTTCATCTCCTTCAGACTTTTTCTGAAACTCAATGCCCTGAAACTGGACCCTTGAAGATCGATATTGA
CAACCATAAGCATTTCCAAAGCCCCATCCTAAACCAAGACCAACTCCGCATCCCCCACCTATTCACAAAGAGGAAATTCA
ATTCAGTACCAATTTACTCTAGATGATGTG----TATATAGTAACTGATAAGCTTTGTACCAATGCCCAAGCCGAATACG
TTCAGAGGCAT
>chr5B_1
TCTATTACTACGACACCGGTGCACGCGACATCTAAAATTATGAG-----AAAAACCTTATTCTCTTTTTCTTGCCCTCTA
TCACTCTATGACTCCAATGTCAAATCTGAAGGAAAGAACTTAGTCTCCAATCCGCCGCACGAAAGAGACAAGCAACTGAA
ATGCTTCATCTTTAGTTCTGCACCACAGCTATGCATCCTTCAAGGAGAATCAGATCCCATACTCTCCATTATATTCTGCT
AATGGATCATTAATGATGCAGACAAAAATTATATGGGGAAGATGGATCAGGTCACGAGACACCGTACGCGCAAGTTCTTC
TGATGCCACAGACTGCACAATATCCCGCAGGCAGGCAAACACATATCTCTCATGAGAGTTTGTGGCTCGAAATCAGCGAA
GGAAGACTCAACAGATGTATAATCTGCCTGAATCCATCTATCACTGGGGTCCACATGTCGGTTGCTTCTCATGCGTATTA
AGGAGTTCAAAATAAGTTCATGGCAGACAACATCCTTTGCAACCAGACAAGCAGAGATTTTAGCTCGGAAATTCTGTAAT
TACTTTTCTTCAAGCTGTGTTCCCATCTCTTCTCCCTTTCTTCACGAA--AACTGTATTCCTTCGTTGCTAACAAGGTAC
AACCAGCACCAGTAGGGCTGTCTCATGATTCTCCAAGTAGAAACAGT-ACTGCCATAGGACAGTACTTGGCCAGATTTGA
CTTCAGATTCTAGGAGCATCAGTTCTCATGGTGTTTGGTCCATTGGTGTCCAATCAAGCTCAAACCTCTGCTCAAGTAGA
AGCCAACGACTGTGAATAAAATCGTTCATGATCCTCTGTAGGAGCTTGTCAAATCATTCATATCCTACCAGATGTGCAGT
CCGTGTGACCCTTGCCATGGTGGTAGCGTTCCAAGTAGAAAACTACAGCTATATATACCAGGGTTGGGGAGGAGAGAGGT
ACCAACCAAGAGGGAACTGCCATCGGTTGCTTGACCCCAAGGAGGAAAGAACAAACAGTAGCAGATTTTAGCGCCTCCCC
AGCCTTTGTTGATGGGCCGCAGTGCAATTGCAAAATCGACTGGTCTTCTCCGGTAAGTAGCCTCTAGCATCCCTCTAAAC
CTGCAATA---------------TGGTAGATTCCAGAACGATGACATTCAAACATTACTGTAATCTAAAGATTGTTCATA
TCCTAGTGATGAGAAACTTGAATTGCTAAATGCAACATCATTATGCTGATATGCTCCATAAAGTAACTGCCTGGATTGTG
ATATGCAGGGAAGTTAAGAACAGGCAAAGCTCTAACCTTACGAGCCGGGTGCAGCCAACAAAAGCAAGGTCGGCAGAGAC
AGCACTGTGGGTGCCACACCCAAGGACAGGGATCTACTACCCCAGGGGCTTTGAGTGGGTCATGGAGGATGTCCCAAGCA
GCGCAGCAACGTTCCAGCAGACATACTGGCTCAGGAGCGGCGACGCAGAGACAGCAAGCTCCC-CACGTCAACCGACGGC
ACAGCTGCCTTTGATAACCCATTTCTGTGAATGCATAAGAGGCCTCACACTGGAAGAATCACTGATAGCAGCAGTTCTAC
AAGCCACCACCATTGTTGCCAGGTCGATACATAATATGATAAACCAGCTGCTCAGATTTCCAGCATGTAGGCACCGCATC
CACCGAAAGATCAGTGTTAAACTCTGCATTAATCTTCTCTATTGCATTCTCATTTTCACTGATTTTACTTAAATAAAAGC
CGCACCTGATTGTAATATTTGGAACATTTTGAGCTAACAGTTTTAACTCTCAACCTTGTTGCAAAAATTAGCCTACTAAT
TATAGTCTTCAGAAAAAAAAATACAGCCTTCAGTTTTGTTTCCCCTTGTAGGGAAGAAATTATGCAGGGGAGTCATGAGT
TCACAATAGTGCTCAATGTTTTTATGCACATTCTATTACAACAAGATTGTAATTAACCATATCCAGACATAATGCACTAC
ACACA-TAAGTGAATTACAGGTACTTAACAAGAGTAACAACAAACACTTGGAGGGTGCACCCAACCAAGAGAATGTTAAT
GGACAATATTAGCCAAATATGAAGACCGTAATCCGAAACGAAAACAATA-CATGGATTATCCTCATTCTGTTACTATGAA
AATGTCCAAGTTCATCAAAACATCAAAATGCTTTCAAACAACTTTCCAGGTAGACAATTGACTACAATCAAGGGGGCAAT
GGTAACATTGCCTGTGCCAAATGTATGATCGCAGCTATACTAGCCATAAGGACGAGACTTTTCAACAAGCCCTGGCGAAG
CAAGCTTTGGTGCTTCATCTCCTTCAGACTTTTTCTGAAACTCAATGCCCTGAAACTGGACCCTTGAAGATCGATATTGA
CAACCATAAGCATTTCCAAAGCCCCATCCTAACCCAAGACCAACTCCGCATCCCCCACCTATTCAGAAAGAGGAAATTCA
ATTCAGTGCCAATTTACTCTAGATGATGTAGTTCTATATAGTAACTGATAAGCTTTGTACCGATGCCCAAGCCGAATACG
TTCAGAGGCAT
>SNPs
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-----------------------------S--------------------------------------------------
------------------------------------S-----------------------S-------------------
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----------------------------------------------S------------S--------------------
-------------------------------S----------------------------------------------S-
------------------------------S-------------------------------------------------
-------------------------------------SSS----------------------------------------
-----------------------------------------S--S-----------------------------------
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-----------S--------------------------S----------------------------S------------
-----------------------S--S-----------------SS-------------------------S--------
-----------------------------------------------------------------------S--------
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--------S-----------------------------------------------------S--S--------------
----------------------------------------------------------------------S-------SS
----------------------------------------------S------------------------S--------
-----------------------S--------------------------------------------------------
-------------------------------------------------S-----------S------------------
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-------------------------------------S------------------------------------------
-------------------S--------------------------------------S---------------------
-------------S----------------------------S-------------------------------------
---------S-----------S---------------S--S-S-------------------------------------
--------------------------------------------S-----------------------------------
-------S--------------------------------S-----------------------S---------------
----------------------------------S-------------------------------------S--S----
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------------------------------------------------S------S------------------------
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>forward_479
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----------------------------------------------------------CGGTTGCTTCTCATGCGTATC-
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>reverse_1327
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----------------------------------------------AGGTGCAGCCAACAAAAGCA--------------
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>forward_904
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------GACCCTGACCATGGTGGC--------------------------------------------------------
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>reverse_1780
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-------------------GGGAACATTCTGAGCTAACAGT---------------------------------------
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