>input_sequence_78209
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---------------ATGCACCCGGATGGACGCACTCTCTTCGTGTCTTGTGGAAACAACCGTGACACACACCA---CCA
CACCTACTCCTTCGACACCAAGAACCATAAATGGAGGTCTCATGGCGACTGGGTGTTGCCTTTCCGAAATCAGGGCTACT
TCGACGGCGAGCTGGACGCGTGGGTCGGCCTTCGCAAGGACGGCTACGTCTGCGCCTGCCGGGTGCCGTCCCGCAGCAGA
ACGCTCGCCGCGCAGCCGGACTGGAAGATGGCCAAGGACGAGCTCTTCCTTGAGCACCCGGGGAGCCTGGGTGCCACCCT
CGCGTACATGGGGAACGCCAGGTTTTGCCTTGTGGAGACGGAAGAACTGGAGTTTGATGGCTTCATGCTCTATATCACCA
TTTTTGGTCTCAAGTACAGCCATGAGGGAGAGCTGC-----AACCCACCACCCGTCGCACCACCAAGTCATGTCGAGTGG
CTAGGAATCTCCTGCAGTTTTCTCCCGTGGCGTTTTGGTTA---------------------------------------
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-------------------------------------TAG----------------------------------------
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>chr7D_1_TraesCS7D01G210800
GCACGCGTTCCCCATGGCCTCCGTGCCGCCATGTCGTGCCTCATGGAGGAGTTCCTCAGCCTCAGGGTGTGGGACGGTTC
CCAGCTCGAAGGCAGGAGCGGCCTCCGTTTCGCCGTCCACAAGCTCTCCGTTTCCGTGGCAGCGGCCCGTGGCGCGTCGT
CGTCGTTCGCCTTCCTAACCGGCGGCAGCACGGCCAGCACGGTGAGAACCAGCACGGCCGAGTTGAGCTCCGGCACCGTC
GATGAGCTGTACGCGTC------CGGGAGCCAGCCGGCGGGGCCTGATGTCTTCTCGGACGGGGAGTTTCCGGATGAGCT
CGCCCTGATCTGCCCGGCGAGCTTGTCTGTCCTCCATGAGATCTCACTGCGTGTCATCCGTGCCGGCTACACGAAGGAGC
TTCTCCACACGTTCGCCGACGCTCCCTGCGAAGTTTTGGACAGGTGTGCTAGCTGGCTTCTTTGATTCTGCAAATGCTCT
GTAATCCCCCATAT---------TAGATCTGAATTTGGCATTTGGACTCCTTTCTCTCGGAGCTGATGAACTGGAATATT
GTGACCATTGATTGGAGCAGGTTCTTGTGGATTCTCCAAATCCAAATGAGATGCTCTCGGGAGGCCGAGACTGACGAATC
GATCAGTTACGAGAACGTCAAGTGGTGGACAGCGGAGGACATGATCCAGCGGTGGATCCTGGCGACCAAACTGGTGGGGA
AGGCCCTCGACGCTATGCAAACGCAGCTCCACGCGCAGAGCAACGGCGCCTTCGACAGGTTCAAGAATGACTACCTCATG
GCCATGGCGAAGCGGAGATCTTATATCCTGCTCAGATTCGCAGACGGGTTCACCAGCACGTGCTCGCCGGAGAAGCTCAT
ATACGTCCTGGAAATGTATGAGGTCCTTGACAGAGCTTCCCCTGGGCTCGTGCTCGTGCTCACCGGGCAGCAGAAGGAGC
TCTTCTCCCGGCAGGTCGAGGTGGTTCTCGCCAAGC--------------------------------------------
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----------------------------------------------------------------------------CGTG
ATCACCGCCTATGCCATGCACCCGGATGGACGCACTCTCTTCGTGTCTTGTGGAAACAACCGTGACACACACCA---CCA
CACCTACTCCTTCGACACCAAGAACCATAAATGGAGGTCTCATGGCGACTGGGTGTTGCCTTTCCGAAATCAGGGCTACT
TCGACGGCGAGCTGGACGCGTGGGTCGGCCTTCGCAAGGACGGCTACGTCTGCGCCTGCCGGGTGCCGTCCCGCAGCAGA
ACGCTCGCCGCGCAGCCGGACTGGAAGATGGCCAAGGACGAGCTCTTCCTTGAGCACCCGGGGAGCCTGGGTGCCACCCT
CGCGTACATGGGGAACGCCAGGTTTTGCCTTGTGGAGACGGAAGAACTGGAGTTTGATGGCTTCATGCTCTATATCACCA
TTTTTGGTCTCAAGTACAGCCATGAGGGAGAGCTGC-----AACCCACCACCCGTCGCACCACCAAGTCATGTCGAGTGG
CTAGGAATCTCCTGCAGTTTTCTCCCGTGGCGTTTTGGTTA---------------------------------------
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-------------------------------------TAGCTATTTGCTGTTTGGCTTGGTTGCCATGCAATGCATATTT
GTCATTCTCATGGATCTGAATTAGTACGATTTGTCGCAATGAAACTTGCTTCTTTTGGTAATTTTCGTGGAACCTGCTGA
GCTATCCTTACTATTAGTAGCAAAAGAGTTTGTATGTTGCAATGGAAGCATACATTTTATTCTATGGTTCAATACCAATC
CTCAATAAAATTCATATGCATCAAGTGCCATTGTCATAGCTTGGAATTAGCTGTTTGGCTTGGTTGTATGTAATGCATCT
ATGTCCTTCTCATGGATGTAAATATTGATTTGTCGCAATAAA-AAAATTTCTTCTCTTGCCCATTTTTGTGGAACCTACT
AGGTTAT-TTTACTACTAACTAAATGCCCGTGTGCTGCCATAGAAAAATAAATATAACTTAAAA-TGGTATATATGAAAA
TAAGTTATGTATTACAACCCCACCCGTCGGTTTGTAAT-GACGGTTACCCTCAAGTGTTTGCTCGCTTCTTTCTTGTTCC
CTCCCCATC----------CCGCCCCATGTCTCCATGGAAAACATGTGCTATTGAGCCTCTAGGCGAGGTCTCTCTAGCA
CTTT---TTTTCCCTTGTTGGACTGAGAACATCTCTAGCAGATCATGTAAAGGTCCATACCGCAAAAGAGGTTTCCGATA
TACCCTAAAACATCGGCACGACTATGTCTCGGTGCAAGCGAGATAGAGCTCTCGCTGAAGGCAGTGGCTTAAATAGGCCG
GCACAGCTCGCGCGAGGGCACTGCATGTTTTTTTTTGTTTGTT--ACCTTTTTTTTCTTTTT---TTTCTGTTTTTTACT
TTTATTTACACTTCCAAAAATTGTAAACATATATATTACAAAATATATTTTTCGCAATGTT---AAAATTGTTAAATGTG
TATAGGGAAAAACCTTGTATACAAAAAATATACAATGAGTGTGAAAAAAATTGATCGTGTATTTAAAATATGTTACACAA
GTATTTGAAAAT-GTTAATCAAGTGT
>chr7B_18
-----------------CCTCCGGGCCGCCATGTCGTGCCTCATGGAGGAGTTCCTCAGCCTCAGGGTGTGGGACGGTTC
CCAGCTCGAAGGCAGGAGCGGCCTCCGCTTCGCCGTCGACAAGCTCTCCGTTTCCGTGGCAGCGGCCCGTGGCGCGTCGT
CGTCGTTCGCCTTCCTAACCGGCGGCAGCACGGCCAGCACGGTGAGAACCAGCACGGCCGAGTTGAGCTCCGGCACCGTC
GACGAGCTGTACGCGTCCGGCTCCGGGAGCCAGCCGGCCGGGCCGGATGTCTTCTCGGACGGGGAGTTTCCGGATGAGCT
CGACCTGATCTGCCCGGCGAGCTTGTCCATCCTCCATGAGATCTCACTGCGTGTCATCCGTGCTGGCTACACGAAGGAGC
TTCTCCACACGTTCGCCAACGCTCCCTGCGAAGTTTTAGACAGGTACAAACTGAATCCTCTTT-AATTCTTGATTGAAAG
GGAAAATATACTACAGCATATTGTAGATCTGAATTTGGCATTTGGCCTCCTTTTTGTCAGAGTTGATGAACTGGAAGATT
GTGACCATGGATTGGAACAGGTTCTTGTCGATTCTCCAAATCCAAGTAGGATGCTCTCCAGAGATCGAGACCGACGAGTC
GATCAGCTATGAGAACGCCGAGTGGTGGACAGCGGAGGACATGATCCGGCGGTGGATCCTGGCGACCAAGCTGGTGGGGA
AGGCCCTTGTCGCTATGCAAACGCAGCTCCTCGCGCAGAGCAACGGCGCCTTCGACAGGTTCAAGAATGACTACCTTATG
GCCATGGCGAAGCGGAGATCTTATATCCTGCTCAGGTTCGCAGACGGATTCACCAGCACGCGCTCGCCGGAGAAGCTCAT
GTACGTCCTGGAAATGTACGAGGTCCTTGGCAGCGCTGTCCCGGGGCTCGTGCTCGTGCTCACCGGGCAGCACAAGGAGC
TCTTCTCCCGGCAGGTAGAGGTGGTTCTCGCCAAGCTGGCGCGCGCGCTGAGGGTCATGATCGGCGGCGCCGTCACCAAG
GTCCGAGCCGGCGTCGGCTCAGGGACGCAGAGCGAGACGCGCGGGGTCGGCGGCGGCGTCCATCCGCTGACGCGGTACGC
CGTGTCCTGCATCGAGTCGCTAGCACCGCACCGCGGCGCGCTGGATGTGATCCTCGCGAGCACGGGCGGCATCCTCGAGG
GCGTGAACTCGTTCGGCGATCTCTTCTCGGAGCTAGTCGCGTCCCTGGAGCCCAAGCTGGAGGAGATATCCGCCCTCCGT
GGCGAGGAAGGAGGCGGCCTGCGGCACCTCTTCGTGGCCAACAACACCAGCTTCGTGCTGAAACGCGCCGGCGTGCTCGG
GGGAGACGACGAGTGGACCGCGTGCCACCGGAGCCGAGTCGAGCAGCACATCACGAGCTACATCGAGGCTTCCTGGGCGC
CGGTCGTGGCCTGCCTCGAGGCCGGCAAGCCCGCCACCAAGGCGCTGGCCAAGTTCAACGCCGCGCTCGAGAAAGCATAC
AACGGCCACGTACGCTGCGAGGTCTCGGATCCCGAGCTCAGGGCGGCGCTGCGGAAGGCCGTGTCGGAGAAGGTCGTCGC
TGCTTATGGCGCGTGGCTGATCGAGCACCCCAAGCTTGGCAAGTCTGCCAGGTACACGCCCGATAGCCTGGCCGGGTTGG
TGTCAGAATTGTTTGAAGGAGAGGACGCAGCGGCCAGATAGTCCTAGCACTGCTCGGAATACGCGGCCGTCTCGGACTCT
GCGGAGGTATGTGTTCCCCGGCCTCTTGGGTGTTCGATTGCAATCAGAGGCGGTTTCTTTCTTGGGTTTACAAATAGGTC
ATGAATTTGCAGATCAGGTCGCAGGATCTCAATGACGAATCATCAGATAATCAACTCGGAGAAGCAGATCTTGGGAGGAG
GGATGTCCAACCCCAAGCGGCGGCAGGGGCCGGTGAACCACCACGACCGCGCCGGCAAAAGATCGCGGCCTGTGCACAAG
CAGCAGAAGCACCTCTATCTTGTTCTAGACGACTGGACCAGAGGCTTCACCATCCGCAAGATCGACGTCGACGCCATGGA
CAGCGGCCCCGACCTGGACCTGGACCTGGAGCCCCCGGTCGTCCGGCTAGTGTCACCCGCACCTGTTTATCCCGTGAACT
TCACTGCCCTGGGCAGCAACATCTTCATCGCAAGCAACAGGCACCCCGGCACCATGGTGTACGACACGGAGACGGACGGG
CTGGCCATCGGCCCTCTCCTCCCGGACACCCTGCTCGGCGGCACCCGCGTCTTCGCGGCCACCGCCGACACGCAGCAGCT
GTACGCGCTGAAGTACAGGATCTGTGACAGGCAGCAGGCCTTCGAGGTGATGTCCACGGCCTGTGTCGAGGATTGGTATC
CCAACTCTTTCCCAAACCCAAGCCAGGACTGGTCCTGGGCAACCGTTCCGTCACCACCGCCATTCCCCAAGGATTGCGTG
GTCACCGCCTACGCCATGCACCCGGACGGACGCACTCTCTTCGTGTCTTGTGCAAACAGCCGCAAGACGGGCCG---CCA
CACCTACTCCTTCGACACCAGGAGCCATGAGTGGACGTCTCATGGCGACTGGGTGTTGCCTTTCCAAAATCAGGGTTACT
TCGACGGCGAGCTGGACGCATGGGTCGGCCTTCGTAAGGACGGCTACGTCTGCTCCTGCCGGGTCCCTTCCCGCACCAGA
ACGCTCGCCGTGCAGCCGGACTGGAAGATGGCCAAGGACGAGCTTTTCCTCGAGCACCCGGGGAGCCTGGGTGCCACCCT
CGCGTACATGGGGAACGCCAGGTTTTGCCTTGTGGAGACGGAAGAACTGGAGTTTGATGGCTTCATGCTCTATATCACCA
TTTTTGGACTCAAGTACAGCCATGAGGGAGAGCTGCACTGCAACCCACCACCCGTCGCACCACCAAGTCATGTCGAGTGG
CTAGGAATCTCCTGCATTTTTCTCCCGTGGCGTTCTGGTTATAGCTATTTGCTGTTTGGCTTGGTTGCCATGCAATGCAT
ATTTGTCATTCTCATGGATCTGAATTAGTACGATTTGTGGCAATGAAACTTGCTTCTTTTGGTAATTTTCGTGGAACCTG
CTGAGCTATCTTTACTATTAGTAGCAAAAGAGCTTGTATGTTGCAATGGAAGCATACATATTCTATGGTTCAATACCAAT
TCTCAATAAAATTCATATGCATCAAGTGCCATTGTCATAGCT--------------------------------------
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-----------------------------------------TGGAATTAGCTGTTTGGCTTGGTTGTATGTAATGCATCT
ATGTCCTTCTCATGGATGTAAATATTGATTTGTCGCAATAAA-AAAA-TTCTTCTCTTGCCCATTTTCATGGAACCTACT
AAGTTAT-TTTACTACTAACTAAATGCCCGTGTGCTGCCATAGAAAAATAAATATAACTTAAAAATGGTATATATGAAAA
TAAGTTATGTATTACAACCCCACCCGTCGG-TTGTAAT-GACGGTTACCCTCAAGTGTTTGCTCGCTTCTTTCTTGT---
-------TC----------CCGCCCCATGTCTCCATGGAAAACATGTGCTATTGAGCCTCCAGGCGAGGTCTCTCTAGCA
CTTT---TTT--CCTTGTTGGACTGAGAGCATCTCTAGCAGATCCTGTAAAGGTCCATACCGCAAAAGAG----------
--CCCTAAAACATGGGCGCGACTATGTCTCGCTACAAACGAGATAGAGCTCTCGCTGAAAGCAGTGACTTAAATAGGCCG
GCACAGCTCGCGCGAGGCCACTCCATCTTTTTGTT-GTTTGTT--ACCTTTTGTTTTCTTTTTTATTTCTGTTTTTTACT
TTTATTTACACTTCCAAAAATTGTAAACATATATATTACAAAATATATTTTTCGCAATGTTTTGAAATTTTTTAAATGTG
TATAGGGAAAAACCATGTATACAAAAAATATACAGTGAATGTGAAAAAAATTGATCGTGTACTTAAAATATGTTACACAA
GTATTTGAAAAATCTTAAACAAGTGT
>chr7A_18
-----------------CCTCCGGGCCGCCATGTCGTGCCTCATGGAGGAGTTCCTCAGCCTCAGGGTGTGGGACGGTTC
CCAGCTCGAAGGCAGGAGCGGCCTCCGCTTCGCCATCGACAAGCTCTCCGTTTCAGTGGCAGCGGCCCGTGGCGCGTCGT
CGTCGTTCGCCTTCCTAACCGGCGGAAGCACGGCCAGCACGGTGAGAACCAGCACAGGCGAGTTGAGCTCCCGCACCGTC
GATGTACTTTACGCGTCCGGCTCCGGGAGCCAGCCGGCCGGGCCTGATGTCTTCTCGGACGAGGAGTTTCCCGATGAGCT
CGACCTGATCTGCCCGGCGAGCTTGTCCGTCCTCCACGAGATCTCACTGCGTGTCATCCGTGCCGGCTATACGAAAGAGC
TGCTGCACACGTTCGCCGACGCTCCCTGCGAAGTTTTAGACAGGTACAAACAGAATCCTCTTTAAATTCTTGATTGAAAG
GTAC--------------------AGATCTGAATTTGGCATTTGGCCTCTTTTCTGTCAGAGTTGATGAACTGGAATATT
GTGACCATGGATTGGAGCAGGTTCTTGTCGATTCTCCAACTCCAAGTGGGATGCTCTCCGGAGGCCGAGACCGGCGAGTC
AATCAGCTATGAGAACGCCGAGTGGTGGACGGCGGAGGACATGATCCGGCGGTGGATCCTGGCGACCAAACTGGTGGAGA
AGGCCCTCGTTACTATGCAAACGCAGCTCCACGCGCAGAGCAACGGCGCCTTCGACAGGTTCAAGAACGACTACATCATG
GCCATGGCGAAGCGGAGATCCTACATCCTGCTCAGATTCGCAGACGGGTTCACCAGCACGCGCTCGCCGGAGAAGCTCAT
GTACGTCCTGGAAATGTACGAGGTCCTTGGCAGCGCTGTCCCTGGGCTCGTGCTCGTGCTCACCGGGCAGCACAAGGAGC
TCTTCTCCCGGCAGGTCGAGGTGGTTCTCGCAAAGC--------------------------------------------
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>chr7A_984
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------------------------------------------------------------------------------TG
ATCACCGCCTACGCCATGCACCCGGACGGACGCACTCTCTTCGTGTCTTGTGGAAGCAACCACGACACACACCACCACCA
CACCTACTCCTTCGACACCAAGAACCATAAATGGAGGTCTCATGGCGACTGGGCGTTGCCTTTCCAAAATCAGGGCTACT
TCGACGGCGAGCTGGACGCGTGGGTCGGCCTTCGCAAGGACGGCTACGTCTGCGCCTGCCGGGTGCCGTCCCGCAGCAGA
ACGCTCGCCGCGCAGCCGGACTGGAAGATGGCAAAGGAGGAGCTCTTCCTCGAGCACCCGGGGAGCATGGGTGCCACCCT
CACGCACATGGGGAACGCCAGGTTTTGCCTTGTGGAGACGGAGGAACTGGAGTTTGACGGCTTCATGCTCTATATCACCA
TTTTTGGTCTCAAGTACAACCATGAGGGAGAGCTGCA-----ACCCACCGCCCGTCGCACCACCAAATCATGTCGACTGC
ATAGGAATCTCCTGCAGTTTTCGCCTGTGGCGTTCTGGTTA---------------------------------------
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-------------------------------------TAGCT--------------------------------------
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-----------------------------------------TGGAAATGGCTGTTTGGCTTGGTTGTATGTAATGCATCT
ATGTCCTTCTCATGGATGTAAATATTGATTTGTCGCAATAAAGAAAA-TTCTTCTCTTGCCCATTTTTGTGGAACCTACT
AAGTTATCTTTACTACGAACTGAATGCCCGTGTGCTGCCATAGAAAAATAAATATAACTTAAAACTGGTATATATGAAGA
TAAGTTATGTATTACAACCCCACCCGTCGG-TTTGTAACGACGGTTACCCTCAAGTGTTTGCTCGCTTCTTTCTTGT---
-------TCCCTCCCCATCCCGCCTGATGTCTCCATGAAAAACATGTGCTATTGGGCCTCTAGGCAAGGTCTCTCTAGCA
CTTCTCCTTT--CCTTCTTGGACTGAGAGCATCTCTAGCACATCTTGTAAAAGTCCATACCGCAATAGAG-TTTCCGATA
TACCCTAAAACATGG------------------------GAGACAGAGCTCTCGCTGAAGGCAGTGACTTATATAGGCCG
GCACAGCTCGCGCGAGGCCACTGCATCTTTTTTTT-GTTTGTTCGACCTTTTGTTTTCTGT----------TTTTTTACT
TTTATTTACACTTCCAAAAATTGTACACATATATATTACAAAATATATTTTTCACAGTGTTTTGAAA--TGTTAAATGTG
TATGGGGAAAAACCATGTATACAAAAAAAATACAATGAGTGTGAAAAAAATTGATTATGTATTTAAAATATGTTACACAA
GTATTTGAAAATTGTTAACCAAGTGT
>SNPs
SSSSSSSSSSSSSSSSS------S--------------------------------------------------------
---------------------------S---------S------------------------------------------
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--------------------------------------S-----------------------------------------
--S------------------------S----------------------------------------------------
-------------------------------------S-------SSSSSSSSSSS-S-----S-S-SSSSS-S--SSSS
----SSSSSSS--S-------------------------------S---------S--S---S-----------------
--------S-------------------S----------------S--S---------S------------S-----S--
------S--S-------S-S---------------------------S--------------------------------
---------S----------------------------------------------------------------------
------------------------------------------------------------S-------------------
S-----------------S----------S---S---SS---------------------------------S-------
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-----------S--------------S-----------------------------------S-----------------
-----------------------------------------------------------------S--------------
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--------------------------------------------------S-----------------------------
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----------------------------------S---------------------------------------------
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------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
-----------------------------------------------S--------------------------------
-S------------------------------------------------------------------------------
------------------------------S----------------------------------------------SSS
SSSSSSS-------------------------------------------------------------------------
----------SS----------------S---------------S-------------------------S---------
-------------S---S-------------S-S---S----------------------------S-------------
-----------------S--------S--------S----------------S---SS----------------------
-------------------------------------------------------------------S------------
--------------S-----------------------------------------------------------------
------------------S-------
>forward_454
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----------------------------------TTTGGACAGGTGTGCTAGCT--------------------------
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>reverse_3346
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-----------------------------------------------------------------CGTGGAACCTGCTGA
GCTAT---------------------------------------------------------------------------
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