>input_sequence_78185
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---------------------------------------------------------ATGGCGAAGCCGCAGCAGGAGGT
GTACTTCGTGTTCATGAACTTCGACCCTGTCTACGAGCGCCTGAGGGCCGATCGGTCTGTATACCTCGCACATAAATATA
ATGGCTTGCATCTTTGTATGCAATATATGTGCGCGGTTTTGATGGATGGTTTGTTGGG-----TGCAGGACGAAGCAGGG
GTCAGCGACGCTGGACGCGTACCTGAGCCAGAAGCACGACAAGCTCCTCGCCAAGCTCCTCCAGCCCGACACCTATTGGA
AGAAGTCCTCGCTGGCCATCGTCGACGGATTTGCCGTCGAGATCACCGACGCTCAGGTCACCGCCCGGCCTATAACCTCA
CATG---CATGGATGTACATGGATCCATCATATG---------TACTGTACATGAAACTTCTCTTACACCCCTGATGGCA
TATATGATCGGTTGAACTATGTACTGATGCAGGCGAGCGTGCTGAGGTCGGCCAAGGAGGTGAGGGTGGTGGAGAAGAAC
CAGGAGCTTGATTGA-----------------------------------------------------------------
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>chr3B_1_TraesCS3B01G171700
CCTTGCCGGCCATTGCCGTCCTTGGGCAGGATCCGATCCGTCCGGGCCCTCTCCTCTCCTCTCGCTCTGGCCATGCACGC
AGCAGCCGGGCGGCAGCCAGCTCTGCGTCGCATGCATATGCATGCATGCACGCGGACGTACGTACTGCGAGCCAGTCTGC
GAGCTGCCCGCTCTG------CTCACACCCCATCCCATCCGGATCTGGTACTGACCAGCA-------CCGGCTGCGACGA
CATGCATGCGTACAATCCGGCCAGTCTCCAGCCCCCCCCT-CTCTCTCTCTGAGTCCCAGGTGCAGCGCAGAGATCTCGA
GCCCTTGACCTCTTCCAGCTCTGTGCGAGATTCCATGCTACGTACACATCCACTGCGCCTGCATGCAGGCCTGCGTCACC
ATCGCATGCGCCCTCCCGTCTGCCCAACCATCAAAGACATTCTATTGGATATTGCTCACGAACCATAC--AAAAATGTGT
ATGTATATACTCT-ATCTTCTCCAGCAATCCAACTGCAACCCACATATAATATACATGCTCACGCACCCTCCACAGTACC
TGCAGCAAGCTGGCTATATGGACAAGTAAGGGTTGGTTAACTAGTGGCTGGACGTACGCATATGCATGTGCCTGCGCTTT
TTATAGGTGAGATTCCCTTGACCAAGTTCAAGCCGGCCTAAGCTCGCGCAGTTGGCTGCATGTTTGTTAGTTGCGTCGCG
CTTTCGCTAATTTGACTAATCACTCTAGATCTAGGCTAATCTGGACACAGTAAGAAAGCTTGCAGGTACAAGCTAGCTAG
CTCCCTCCCGGCCGGTGACATGATCGGCATGTGACCACCTCCTCTCCCCCGGCTATAAATAGCGGCCCATAGCAATGATA
TGGAGCCAAGCCAAGCAAGCACTTGCTCTCTCTCTCTCTCATATCATTAGTCATTACCCGCACTGAAAACCTTAGTACTG
CTAGCTACTAGCTTCCTGTGTAGCTCGAGGAAGAGAGAATCCGACTGAGTGCGAGCAATGGCGAAGCCGCAGCAGGAGGT
GTACTTCGTGTTCATGAACTTCGACCCTGTCTACGAGCGCCTGAGGGCCGATCGGTCTGTATACCTCGCACATAAATATA
ATGGCTTGCATCTTTGTATGCAATATATGTGCGCGGTTTTGATGGATGGTTTGTTGGG-----TGCAGGACGAAGCAGGG
GTCAGCGACGCTGGACGCGTACCTGAGCCAGAAGCACGACAAGCTCCTCGCCAAGCTCCTCCAGCCCGACACCTATTGGA
AGAAGTCCTCGCTGGCCATCGTCGACGGATTTGCCGTCGAGATCACCGACGCTCAGGTCACCGCCCGGCCTATAACCTCA
CATG---CATGGATGTACATGGATCCATCATATG---------TACTGTACATGAAACTTCTCTTACACCCCTGATGGCA
TATATGATCGGTTGAACTATGTACTGATGCAGGCGAGCGTGCTGAGGTCGGCCAAGGAGGTGAGGGTGGTGGAGAAGAAC
CAGGAGCTTGATTGACCAGCCAAACATCCAGGC--AGTCATAAGCATAATCATTTAGATGCTTTTGGCATCTGCCATAGC
TATGGAAGCTTGGTTTAGTATAAGCCAAGGCTGGAGAACGTTGATCAGTTGCTATTAGTCAATTGCTTTTGCGGCGTAAG
TGTATCGATCGGTGTGTGTTTTTGTGTGATCTCCCATGGCTTTGTTGACTCTAATGTCAAGATCAAGCTTAGCTGCTATC
GTTATATACTAGTACGTACTACTACTACTATTTAATTAGCACTAGCTGCAGTAATATAGATATATAAAGTTCATCATC--
--GATCTTACTAGCAAGGGTCTACTACTGATATTCAGAGCAAGACTTTGAAGATTTGAACCCTGCAATGTAATGGTGATT
ATAAACGAATGATCAATTAGTTAAAAAAAAAACTATCTGTGTAGCGGTAGTATTTTATAAGCTCATGCATGTACTCTCTT
CCGGTGTCCAACATGCATGGCAGTGTGTGTATGACTTTTGGTTCTTGTTTCTATATGCAATATGT--AATGCATGGGTAG
ATGCATGCTTTGGGTGCCTAATGTGAGTGGTTTAAGGTCTTGGGTTGACTTGTGAAAACTACAAGACAAGGATGAGGAGG
A---------GGTTTTGTTGATGAGTGGACTCGGCCTCTCGAACCGCTGATCATGATATGATTCCTATACCAGCGAGTTT
CCGAGATGAGGAAACCTCTCGTGGAAACCTGCAATGATAACACAAATAATTGCACTGATTTGTGCGTGAGCG----TGGT
TCTGTGCGTGCCCGGAGAGATGATCGATGCAGTGCGTGTGGAAGCACTTTGATTCCAGTTTTCAGGCCTAGAGAACCGTA
GGCAGAACAGCAGCATGCACGCTTGTTCGACTGTACGTGTGCCTATCATTTCCCGACACGTATCGCTCTGCCTGACAAAG
CTGCCACCTGGCGGTGCACTGTAGGATCCCCGCGAAAAGCGAAAACATATAAACTAAAAAGTGCGTGTCTAGTGCT
>chr3D_1
CCTTGCCGGCCAGTGCCGTCCTTGCGCCGGATCCGATCGGTCCGGGCCCTCTCCTCTCCTCTCGCTCTGGCCATGCACGC
AGCAGCCGGGCGGCAGCCAGCTCTGCGTCGCATGCATATGCATGCATGCACGCGCCCGTACGTACTGCGAGC--------
----TGCGCGCTCTGCTCACACTCACACCCCATCCCATCCGGATCTGGTACTGACCAGCA-------CCAGCTGCGACGA
CATGCATGCGTACAATCCGGCCAGTCTCCGGCCTACAGCGCCTCTCCCTCTGAGTCCCAGGTGCAGCGCAGAGATCTCGA
GTCCTTGACCTCTTCCAGCTCTGTGCGAGATTCCATGCTACGTACATATCCACTGCGCCTGCATGCAGGCCTGCGTCACC
ATCCCATGCCCCCTCCTGTCTTCCCAACCATCAGAGACATTCTATTGGATATTACCCACGAATCATACAAAAAAATGTGT
ATGTATATACTCT-ATCTTCTCCAGCAATCCAACTGCAACCCACATAAAATATACATGCGCG--------CCACAGTGCC
TGCAGCAAGCTGGCTATATGGACAAGTAAGGGTTGGTTAACTAGTGGCTGGACGTACGCACATGCATGTGCGTGCGCTTT
TTATAGGCGAGATTCCCTTGACCAAGTTCAAGCCGGCCTAAGCTCGCGCAGTTGGCTGCATGTTTGTTAGTTGCGTCGCG
CTTTCGCTAATTTGACTAACCACTCTAGATCTAGGCTAATCTGGACTCAGTAAGAAAGATGC------------AGCTAG
CTCCCTCCCGGCCGGTGACATGATCAGCATGTGACCACCTCCTCTCCCCCGGCTATAAATAGCGGCCCATAGCAATGATA
TGGAACCAAGCC----------TTGCTCTCTCA----CTCATATCATTAGTCATTACCCGCACTGAAAACCTTAGTACTT
CTAC---CTAGCTTCCCGTGTAGCTCGAGGAAGAGAGAATCCAACGAGT-GGGAGCAATGGCGAAGCCGCAGCAGGAGGT
GTACTTCGTGTTCATGAACTTCGACCCTGTCTACGAGCGCCTGAGGGCCGATCGGTCTGTATACCTTGCACAAAAATATA
ATGGCTTGCATCTTCGTGTGCAATATATGTGCGCGGTTTTGATGGATGGTTTGTTGGGTTGGGTGCAGGACGAAGCAGGG
GTCGGCGACGCTGGACGCGTACCTGAGCCAGAAGCACGACAAGCTCCTCGCCAAGCTCCTCCAGCCCGACACCTACTGGA
AGAAGTCCTCGCTCGCCATCGTCGACGGATTCGCCGTCGAGATCACCGACGCTCAGGTCACCGCCCGACCTATAACCTCA
CATG---CATGGATGTACATGGATCCATCATATG---------TACTGTACATGAAACTTCTCTTACACCCCTGATGGCA
TATATGATCGGTTGAACTATATACTGATGCAGGCGAGCGTGCTGAGGTCGGCGAAGGAGGTGAGGGTGGTGGAGAAGAAC
CAGGAGCTTGCTTGACCAGCCAAACATCCAGGC--AGTTATAAGCATGATCTTTTAGATGCTTTGAGCATCTGCCATAGC
CATGGAAGCTTGGTTTATTATAAGCTAAGTCCCGAGTACGTTGATCAGTTGCTACTAGTCAA--GCTTTTGCGGCGTAAG
TGTATCGATCGGTGTGTGTTTTTGTGTGATCTCCCATGGCTTTGTTGACTCTAATGTCAAGCTCAAGCTTAGCTACTATC
TTTATATACTAGTGCGTACTG----TACTACTTAATTAGCATTAGCTGCAGTGATATAGATATATAAAGTTCTTCATC--
--AATCTTACTAGCTAGGGT---CTACTGATATTCAGAGGATGACTTTGAAGA-TCGAACCCTGCAATGTAATGGTGATT
ATAGATGAATGAGCAATTAGTC----AAAAAAGTATCTGTGTAGCAGTAGTATTTTATAATCTCATGCATGTACTCTCTT
TCGGTGTCCAACATGCATGGCAGTGTGTGTCTGACTTTTGGGTCTTGTTTCTGTATGCAATATGTGTAATGCATGGGTAG
ATGCATGCTTTGGGTGCCTAATGTGAGTGGTTTAAGGTCTTGGGTTGACTTGTGAAAACTACAAGACA---------AGG
A---------GGTTTTGTTGATGAGTGGACTCGGCCTCTCGAACCGCTGATCATGATATGATTCCTACACTTGCGAGTTT
CCGAGATGAGGAAACCTCTCGTGGAAACCTGCAATGATAACACAAATAATTGCACTGATTTGTGCGTGAGCGTACGTGGT
TCCGTGCGTGCCGGGAGAGATGATCGATGCAGTGCGTGTGGAAGCACTTTGATTCCAGTTTTCAGGCCTAGAGAACCGTA
GGCAGAACAGCAGCATGCACGCTTGTTCGACTGTACGTGTGCCTATCATTTTCCGACACGTATCGCTCTGCCTGACAAAG
CTGCCACCCGGCGGTGCACCGTGGGATCCGCGCGAATAG-GAAAACATATAAAATGAAAAAG--------------
>chr3A_1
CCTTGCCGGCCAGTGCCGTCCTTGCGCCGGATCCGATCGGTCCGGGCCCTCTCCTCTCCTCTCGCTCTGGCCATGCACGC
AGCAGCCGGGCGGCAGCCAGCTCTGCGTCGCATGCAT------GCATGCTCGCGGCCGTACGTACTGCGAGC--------
----TGCCCGCTCTG------CTCACACCCCATCCCATCCGGATCTGGTACTGACCACTGACCAGCGCCAGCTGCGACGA
CATGCATGCGTACAATCCGGCCAGTCTCCAGCCTACAGCGCCTCTCCCTCTGAGTCCCAGGTGCAGCGCAGAGATCTCGA
GCCCTTGACCTCTTCCAGCTCTGCGCGAGATTCCATGCTACGTACATATCCACTGCGCCTGCATGCAGGCCTGTGTCACC
ATCGCATGCCCCCTCCCCTCTGCCCAACCATCAGAGACATTCTATTGGATATTGCTCACGAACCATAC--AAAAATGTGT
ATGTATATACTCTTATCTTCTCCAGCAATGCAACTGCAACCCACATAAAATATACATGCGCG--------TCACAGTGCC
TGCAGCAAGCTTGCTACATGGACAAGCAAGGGTTGGTTAACTAGTGGCTGGACGTACGCACATGCATGTGCGTGCGCGTT
TTATAGGCGAGATTCCCTTGACCAAGTTCAAGCCGGCCTAAGCTCGCGCAGTTGGCTGCATGTTTGTTAGTTGCGTCGCG
CTTTCCCTAATTTGACTAATCACTCTAGATCTAGGCTAATCTGGACACAGTAAGAAAGATGCA-----------AGCTAG
CTCCCTCCCGGCCGGTGACAAGATCGGCATGTGACCACCTCCTCTCCCCCGGCTATAAATACCGGCCCATAGCAATGATA
TGGAACCAAGCCAAGCTAGCACTTGCTCTCTCA----CTCATATCATTAGTCATTACCCGCACTGAAAACCTTAGTGCTG
CTAC---CTAGCTTCCTGTGTAGCTCGAGGGAGAGAGAATCCAACGAGC-GCGAGCAATGGCGAAGCCGCAGCAGGAGGT
CTACTTCGTCTTCATGAACTTCGACCCTGTCTACGAGCGCCTAAGGGCCGATCGGTCTGTATACCTTGCACATAACTATA
ATGGCTTGCATC-TTCTATCCAATATATGTGCGCAGTTTTGATGGATGGTTTGTTGGCTTGGGTGCAGGACGAAGCAGGG
GTCGGCGACGCTGGACGCGTACCTGAGCCAGAAGCACGATAAGCTCCTCGCCAAGCTCCTCCAGCCCGACACCTACTGGA
AGAAGTCCTCGCTGGCCATCGTCGACGGATTCGCCGTCGAGATCACCGACGCTCAGGTCACCGCCCCGCCTATAACCTCA
CATGCATCATGGATGTACATGGATCCTCATACATGCTCACCTCTACTGTACATGAATCTTCTCTTACACCC-TGATTGCA
CACATGAGCGACTTAACTATATACTGATGCAGGCCAGCGTGCTGAGGTCGGCCAAGGAGGTGAGGGTGGTGGAGAAGAAC
CAGGAGCTTGCTTGACCAGCCAA-CATCCAGGCGAAGTTATAAGCATAATCATTTAGATGCTTTGAGCATCTGCCATAGC
TATGGAAGCTTGGTTTATTATAAGCTAAGGCCGGAGTACGTTGATCAGTTGCTACTAGTCAATTGCTTTTGCGGCGTAAG
TGTATCGATCGGTGTGTGTTTTTGTGTGATCTCCCATGGCTTTGTTGACTCTAGTGTC-AGCTCAAGCTTAGCTACTATC
TTTATATACCACGTAC---------TACTACTTAATTAGCACTAGCCGCAGTAATATAGATATATAAAGTTCTTCATCGA
TCGATCTTACTAGCTAGGGT---CTACTGATATTCAGAGGACGACTTTGAAGA-TTGAACCCTGCAATGTAATGGTGATT
ATAAATGAATGAGCAATTAGTC----AAAAAAGAATCTGTGTAGCGGTAGTATTTTATAAGCTCATGCGTGTACTCTCTT
TCGCTGTCCAACATGCATGGCAGTGTGTGTCTGACTTTTGGGTCATGTTTCTATATGCATGGGTAG------ATGGCTAG
ACGCATGCTTTGGGTGCCTAATGTGAGTGGTTTAAGGTCTTGGGTTGACTTGTGAAATCTACAAGACA---------AGG
AAGAGGAGGAGGTTTTGTTGATGAGTGGAGTCGGCCTCTCGAACCGCTGATCATGATATGATTCCTACACTTGCGAGTTT
CCGAGATGAGTAAACCTCTCATGGAAACCTGCAATGATAAGACAAATAATTGCACTGATTTGTGCGTGAGCGT----GGT
TCTGTGCGTGCCGGGAGAGATGATCGATGCAGTGCGTGTGGGAGCACTTTGATTCGAGTTTTCAGGCCTAGAGAACCGTA
GGCAGAACAGCAGCATGCACGCTTGTTCGACTGTACGTGTGCCTATCATTTCCCGACACGTATCGCTCTGTCTGACAAAG
CTGCCACCGGGCGGTGCACTGTAGGATCCCCGCCAATAGCGAAAACATATAAACTAAAAAGTGCGTGTCTAGTGCT
>SNPs
------------S-----------S--S----------S-----------------------------------------
-------------------------------------------------------S----------------SSSSSSSS
SSSS-----------------------------------------------------------------S----------
---------------------------------SS-SS-S------S---------------------------------
----------------------------------------------S---------------------------------
---------S-----------------------S----------------------------------------------
-----------------------------------------------S-----------S-SSSSSSSSS-------S--
------------------------------------------------------------S----------S--------
-------S------------------------------------------------------------------------
----------------------------------------------------------S-SSSSSSSSSSSSSS------
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----S-----------S---------------SSSSS-------------------------------------------
---SSSS-----------------------------------S--SSSSS------------------------------
------------------------------------------------------------------S-------------
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---S-----------------------------------------------------------------------S----
-------------------------------S------------------------------------------------
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--------------------S-----------------------------------------------------------
----------S---------------------------S-------------------------SS--------------
-----------------S-------S-----S----S-----------------S-------------------------
-------------------------------------------------------------S------------S-----
S------------S------SSSSS-----S-----------------------------------------S-------
--------------S-----SSS----------------S-S-----------S--------------------------
-----S------S--------SSSSS------S-----------------------------------------------
S-----------------------------S----------S--------------------------------------
--------------------------------------------------------------------SSSSSSSSS---
-------------------------------------------------------------------S--SS--------
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------------S-------------------------------------------------------------------
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--------S---------------------------S---------------------------------------
>forward_632
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----------------------------------------------------CGTACGCATATGCATGTGCC--------
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>reverse_2232
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-----------------------------------------------------------------------AGCGAGTTT
CCGAGATGAGG---------------------------------------------------------------------
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