>input_sequence_78168
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-------------------------------------------------------------ATGGCAAC---------TA
GCAGCGGCAAC---ACGGTCACCCTCCGCAGCTCCGACGGCGAGGAGTTCGTTGTCCAAGCGGACACGATCGCGGCGGCG
TCGGCGCTAATCAAGCACATGCTGGAGGAGGACCGCGCCGGCGGCGTGATACCGCTACCCCAGGTGACCGGCCGCATCCT
CGCCCGCGTCGTCGACTACTGCAACCGCCATTACGCCGACGCCGACGCCGACGCAGCCGCGTACGCCAA------TCCCT
TCTCGTCGGGCGACCCCGACTTGGAGCGGTTCGACACCGACTTCGTCAGCGGCATCGACCAGGACACGCTCTTCCTCCTC
CTCCTTGCCGCCAAAGACCTCGACGTACAGGGGCTCCTGGACCTGGCGTGCAAGACGGTGGCCGACCAGATGAGGGGCAA
GACGGTCGAGGGCATGCGCGCACACTTCGGCATCGTCAATGACT-ACACCCCGGAGGAGGAGGCTGCGCTCCGCAGGGAA
CTTTCATGGGCGTTGGAGTAA-----------------------------------------------------------
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>chr1D_1_TraesCS1D01G201900
ATTTATTGCCTATAGTTTTCTTTGTCGATTTGTTTT-AATGACATGAGACCCTATTCATGAAGGATTTC-CCCCATCCGT
CTGCAACCGCGCAAAGATCAACTACAGCCAAAACGACTGGGGCCACCTCGTCGCGCGCGTGTGCGTCGCCTCATGTGTTG
TTCCGCCCGCGTGCCTGTTTGTGCATGGCTGGTCTGTCCGGGCGTGTAGGGGCTTTGACTGGCCGGGCTTTAGCTTGTCG
GGAAGCTCTTTCATTGTCTAATGATTTACTTAACCGGAAATTGCTTGAGTGTTGAGGCAAGGAGAGGAAGAAGATAGTGA
AGCTATTATC--AGAGATCAATTTCCGGAGATCATCTTATACCCTTTGTAAGAAAAATCATGAATTTCAAAGTTCGAACT
ATGAAACTCACAACTTATCTAGATATGCTTTATCTTTGGATCAGGGCCGTCATGTCTGGCCGGGTCAAAGCCATAATCCT
ATTTCTATCCCCATGTTGATTGATTAATAAAATCCAGCGATTATTCTTGAAGAAAAGACATGTGCCTTATTTGAAAGGGT
GTGGCTAGGATTCATCTATGTGACATAACTATGTCACATCTAAGTATGATGTCACAAAACATCAGAAAAAACAATTAAAA
AAACATTTTGTACAAATCTTGTAGCCCCTAATTATATGGTGAACTATTTAGATGTGAAATTCTTAAAAAATATCTAGATG
TGAATTAGTCATTCTGTATTTGAAAAACATGTCATCTTTTTTAGAAAAAAAATTCCCTGCCTGTGCATCACGATGGAAAA
CCATGTCATCCGTCAATACAAATTTCGGATTAATAAAGAATTTGTATTCTTCCCGCAA---------CCCAATAAGAAGC
CGCCGCCGACTCATCTATATATCC-GAGCGCCGCGTCTCCCTTCTTACTCCCACCCGTCGACCG-------ATTGATCGA
TTGAAACACCGAGTTCAGCAGGAGCGGTTTCGATCTCGATCGACACACGCGTAGGAGACCGATGGCAAC---------TA
GCAGCGGCAAC---ACGGTCACCCTCCGCAGCTCCGACGGCGAGGAGTTCGTTGTCCAAGCGGACACGATCGCGGCGGCG
TCGGCGCTAATCAAGCACATGCTGGAGGAGGACCGCGCCGGCGGCGTGATACCGCTACCCCAGGTGACCGGCCGCATCCT
CGCCCGCGTCGTCGACTACTGCAACCGCCATTACGCCGACGCCGACGCCGACGCAGCCGCGTACGCCAA------TCCCT
TCTCGTCGGGCGACCCCGACTTGGAGCGGTTCGACACCGACTTCGTCAGCGGCATCGACCAGGACACGCTCTTCCTCCTC
CTCCTTGCCGCCAAAGACCTCGACGTACAGGGGCTCCTGGACCTGGCGTGCAAGACGGTGGCCGACCAGATGAGGGGCAA
GACGGTCGAGGGCATGCGCGCACACTTCGGCATCGTCAATGACT-ACACCCCGGAGGAGGAGGCTGCGCTCCGCAGGGAA
CTTTCATGGGCGTTGGAGTAAAC--ACA--CAAATCACTACCCAATCACGTTATTCTTTTTTTACTTTTGGCGATTTGTT
GCTGCCATAAACTAGCAACGTTCCTGGGTGCTCGACTTCATGATA---GTTTCTTATACACATTTAATGGGATACGTCAG
GACCTATTTTCTTTACCCTTGGCAATTGCGTCATTATAGTGTGCATAGTCACTTTTATTAG-------------------
--------------------------------GTAGATGATACCTCACATGTTGTTGCGGCAGTAGTTTGGGACATATTT
CAATGTGATTCATGGTATGAAACATGAATATTTGA------AATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATATAAAAACTAAAATTGAAAATACATATAATTTATTATGTTTGATTACTATATAGTTGTAAAATGTTTA
TTAAATCATAATAGAATGAAAATTCTCATGTGTGTTTGCATGATGTGATGAG-TTTTTTCATGCATGTTTCATGATGAAG
TGACATGCTTGCATGTTGAGAGACATATGACAGTGGAAGTGAGTCTTTTCTCATTCATGCTGTGCGATGATATGGCATAT
GCTTACATGTTGAGAGAAATAGTTAGTGGGGACTA---------------------------------------------
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----------------TATATAGC--------------AGAGTATATAATAAAGCCAACCACGATCAAAACATTACAATA
AGTGAAATAAACAACTACGACCAAGTCTATTTCTTCTGTAACCGTTCACCAAGTTGTCTCTTACCTCCTCATGGATTCAT
CAGATAGG-AATCTTCAGATCTATGCTTGTACTTAACAAGGATATTCTTCCTTGTTGCAAGACTAGCCAATGAGGATCAT
CATAACAACAAGTAGACAACACATT-CAACAAGATAACGACGCAAGTCTGTCGTTGCTAAACCCGACCAATAAATGGCAT
GCCAAGAGTTTCATCCAGATACATGCCTTCGCCAACACTCTATGCCATGGCCAAAAGGTAT---CAGTAGATTGGCTATC
GTAGAT--TTTTTTCCTGGTAAGTCGGTTTTTTGGCTTGCCCGAGTTA
>chr1A_8
-------GCCCATAGTTTTCTTTGTCGATTTGTTTTTAATGACATAAGATCCTACTCATGAAGGATTTTTCCCCATCCAT
TTGCAATTGCGCAAAGAACAACTACAGCCAAAATGGCTGGGGCTACCACGTAACGCACGTGTGCATCGCCTTGTACGTTG
TTCCGCCTGTGTGCCGGTTTGTGCGTGGCTAGCCTGCCCGGACGTGTAGGGGCTTCGACTGGTCGGGCTTTAGCTTGTCG
GGAAGCTCTTTCATTGTCTAACGATTTACTTATCCAGAGATTGCGTGAGTGTTGAGGCAAGGAGAGGAGGAAGACAATGA
AGCTATTATTGGAGAGACCAATTTCGAGAGATCATCTTATACCTTTTGTAAGAAAAATTATGAATTTAGAAGTTCAAACT
ATGAAGTTCACAACTTATCTAGGCATGCTTTATGTTTGGATCAGGGCCGCCATATCTGACTGGGTCAAACCCATAATCAT
ATTTGTATCCCCATGTTGATTGATCAATAAAATCTACTAGCAGATTGTTCCAGAAA------------------------
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----------------------AGAAAAATGTCATGTGTCTTGTTAAAAAAATGCCATGT--------------------
-----------GTCAATACAAATTTCGGATTGATAAAGAATTTGTGTTCTCCCCGCAACCCCCCACCCCCAAAAAAAAGC
CGCCGCCGACTCATCTATATATTCGGAGCGTCGCGTCTCCCTTTTTACTCCCACCCATCGATGATCGATCGATCGATCGA
CTGAAACACCGAGTTCAGCAGGAGCGATCTCGATCCCGATCGGCACACGCATAGGAGATCGATGGCGAT---------TA
GCAGCCGCAAC---ACGGTCACCCTCCGCAGCTCCGACGGCGAGGAGTTCGTTGTCCAAGCGGACACGATCGCGGCGGCG
TCGGCGCTGATCAAGCAA--------------CTGCGCCGCCAGCGTGATCCCGCTACCCCAGGTGACCGGCCGCATCCT
CGCCCGCGTCGTCGACTACTGCAATCGCCATT------ACGCCGACGCCGACGCGGCCGCGTACGCGTACGCCAGTCCCT
TCCCGTTGGTCGACCCCGACCTGGAGCGCTTCGACACCGACTTCGTCAGCGGCATCGACCAGGACACGCTCTTCATGCTC
CTCCTCGCCGCCAAAGACCTCGACGTAGAGGGGCTCCTGAACCTGGCGTGCAAGACGGTGGCCGACCAGATGAGGGGCTA
GACGGTCGAGGGCATGCGCGCACACTTCGGCATCGTCAATGACTGACACCCCGGAGGAGGAGGCTGAGCTCCGCAGGGAA
CTTTCATGGGCGTTGTAGTAAAC--ACA--CAAATCACTACCCAATCACGTTCTTCTTTTTTTACTTTTGGCGATTTGTT
GCTGCCATGGACTAGCAACGTTCCTCGGTGCTCGACTTCATGATATTAGTTTCTTATACACATTTAATGGGATATGTCAG
GACCTATTTTCTTTACCCTTGGCATTTGCGTCGTTATAGTGATTTTTA--------------------------------
----------------------------------------TACTCTGCATGTTGTTGCGGGAGTAGTTTGAGACATATTT
TAATGTGATTCATGGTATGAAATATGAATATTTGAAATAATAATAATAATAATATA------------------------
--------------AAAAGCTAAAATTGAAAATACATATAATTTATTATGTCTGATTACTATATAGTTGTAAAATGTTTA
TTAAATCATAATAGAATGAAACTTCTCATGTGTGTTTGCATGATGCTATGAGTTTTTTTCATGCATGTTTCATGATGAAA
TGGTATGCTTGCATGTTGAGAGAAATATGACAATGGGGGTGAGTCTTTTCTCATGCATGTTGTGCGATGATGTGACATGT
--TTGCATGTTAAGAGAAATATTAGTGGGGGCATA---------------------------------------------
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----------------TATATAAATAATATTATTTAGTAGAGTATATAATAAAGCCAACCACGATCGGAACATTACAATA
AGTGAAATAAATAACTACGACCAAGTCTATTTCTTGTACAACCGTTCACCAAGTTGTCTCTTGCCTCCTCACGGATTCAT
CAGATAGGAAATCTTCAGATCTATGCTTATACTTAACAAGGATATTCATCCTTGTTGCAAGACTAGCCAATGAGGATCAT
CATAACAACAAGTAGACAACATATTACAACAAGATAGCGA-GCAAGTCTGTCGTTACTAAACCTGACCAATAAATGTCAT
GCCAAGAGTTTCATCCAGATACACGCCTTCGCCAACACTCAATGCCATGACCAGAAGGTATTGCTAGTAGATTGGCTATC
ATAGATT---TTTTTCTGGTAAGTCGGTTTTTTGCCTTGCCCGAGTTA
>chr3D_914
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-----------------------------------------------CTCCCACCCATCGACCA-------ATCGCTCGA
TCTATAGACCTAGTTCGACAGGAGCGATCTGCAC--------ACACGCGCGTAGGAGATCGATCGAGATGGCAACCAGCA
GCAGCGGCAACACGACGGTGACTCTCCGCAGCTCGGACGGCGAGGAGTTCGTGGTCCAGGCGGACACGATCGCGGCGGCG
TCGGTGCTGATCAAGAACATGCTGGAGGAAGGCTGCGCCGCCGGCGCGATCCCGCTGACCCAGGTGACGGGCCGCATCCT
GGCCCGCGTCGTCGACTACTGCAACCGCCACT------ACGCCGACGCCGACGCGGCCGCGTACGTCGTGAAGACCACCT
TCTCGTCGGGCGACCCCGACCTGGATCGGTTCGACACCGACTTCGTCAGCGGCGTCGACCAGGACACGCTCTTCGACCTC
CTCCTCGCCGCCAACTACCTCGAGGTGCAGGGCCTCCTTGACCTGGCGTGCAAGACGGTGGCCGACCAGATGAGGGGCAA
GACGGTCGAGGGCATGCGCGCGCACTTCAACATCCTCAACGACT-ACACCAAGGAGGAGGAGGCCCAGGTCCGCAGCGAA
GTTGCATGGGC---------------------------------------------------------------------
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>chr3B_1000
GATGGCA-------------------------------------------------------------------------
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----------------------------------------------------------------------------AGTA
GCAGCGACAACACGACGGTGACTCTCCGCAGCGACGACGGCGAGGAGTTCGTGGTCCAGGCGGACACGATCGCGGCGGCG
TCGGTGCTGATCAAGAACATGCTGGAGGACGGCTGCGCCGCCGGCGTGATCCCGCTGACCCAGGTGACGGGCCGCATCCT
CGCCCGCGTCGTCGACTACTGCAACCGCCACT------ACGCCGACGCCGACGCGGCCACGTACGTCAACAG---CACCT
TCTCGTCGGGCGACCCGGAGCTGGATCGCTTCGACACGGACTTCGTGAGCGGCATCGACCAGGACACGCTCTTCGACCTC
CTCCTCGCCGCCAACTACCTCGAGGTACAGGGTCTCCTTGACCTGGCGTGCAAGACGGTGGCCGACCAGATGAGGGGCAA
GACGGTGGAGGGCATGCGTGCGCACTTCAACATCGTCAACGACT-ACACCAAGGAGGAGGAGGCCCAGGTCCGCAGCGAA
GTTGCATGGGCCTTCGAGTAGACGTACCGGCAAATCACTGGCCGATCACTTATC-----TTTTTCTTTGGGGGATTTGTT
GCTGCCATAAACTAGC----------------------------------------------------------------
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>chr1B_1448
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-----------------------------------------------ACCCCGCAGGAGGAGGCTGAGCTCCGCAGGGAA
TTTTCATGGGCCTTCGAGTAAATATACA--CAAATCACTGCCCAATCACCTTCTTCTGTTTTTACTTTTGGCGATTTGTT
TTGCTGCTGAACTAGCAACGTTCCTGGGTGCTCGACTTCATGATA---GTTTCTTATACACATTTAATGTGATATGTCAG
GACCTATTTTCTTTACCCTTGGCATTTGCATCACTATAATGCACATAGTTATTTTTATTAACTACTCCCTCCATTTCAAT
ATAGATGACTCAACTATTTTGGAACGAAGGGAGTAGATGATACCCTGCATGTTGTTACGAGAGTAGTTTGGGACATATTT
CAATGTGACTCATTGTATGAAACATGAATATTTGA------AATAATAATAATATA------------------------
--------------AAAAGCTAAAATTGAGAATGCATATAATTTATTATGTTTGATTACTATGTAGTTGTAAAATATTTA
TTAAATCGTAATAGAATGAAAATTCTCA--TGTGTTTGCATGATGAGATGAGTTTTTTTCATGCATGTTTGATGATGAAG
TGGCATGCTTGCATGTTGAGAGACATATGACACAAGGGGTGGGTCTTTTCTCATGCATGTTGTGCGATGATGTGGC--AT
GCTTACATGTTGAGAGAAATAGTTAGAAAAATGGTTGTGTACACCTGGGAGTATGTACTCCCGCTCTTCATATACCACAT
AGATGATACCACTATACCTCATTATTATTTTTGATATACCTTATTAATTATTACTAGATACCTCAAAGTGAGTTTTGTAA
AAAAAGTCCATTTAGGTGTATGTATTTTAATTTTTACGCACATAATCTGTTATTTTGTACGTACAAATGGTATATTACGT
AAACTATGAGCCTTGATGATTTTTTTTCATAAAATATGTATTGAGGTATCTTAGAATAATTAATAAGGTATATTGAGAAT
GAAAAAGAGGTATAAATCATTTGAGTATGAGGTATATTGTACATGGGAGTACATGCTCTCAGGAGTACAGAATATATATA
TATATATATATAAGATTATTTAGC--------------AGAGTATATAATAAAGCCAACCACGATCAAAACATTACAATA
AGTGAAATAAACAACTACGACCAAGTCTACTTCTTCTGCAACCGTTTACCAAGTTGTCTCTTGCCTCCTCATGGATTCAT
CAGATAGGAAATCTTCAGATCTATGCTTATATTTAACAAGGATATTCATCTTTGTTGCAAGACTAGCCAATGAGGATCAT
CATAACAACAAGTAGACAACACATT-CAACAAGATAACGACGCAAGTCTGTCGTTGCTAAACCTGACCAATAAATGTCAT
GCCAAGAGTTTCATCCAGATACACGCCTTTGCCAACACTCGCTGCCATGGCCAGAAGGTAT---TAGTAGATTGGCTATC
ATAGATTCTTTTTTCCTGGTAAGTCGGTTTTTTGGCTTGCCCGAGTTA
>SNPs
SS-SSSS---S----------------------------------S---S----S-------------S---------S-
S-----SS---------S---------------S-S-------S---S---SS---S-------S------SS-SS----
-------S-S-----S--------S-----S-S---S----S-------------S------S-----------------
---------------------S----------S--S--S-----S-----------------------S-----S-S---
---------S-------S-------SS----------------S--------------S--------SS------S----
-----SS---------------SS---------S---------------S---S----S-S--------S--------S-
----S-------------------S---------S-SSSSSSSS-SS-SSSSS---SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS-S---S-------S-S-S--SSS--------S--S--SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS--------------------S-------------S----S---------------------S--S----
----------------------S-------S------------S------------S------S---------S------
--------------------------S-S------S----------------------S-------S-S-----------
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--------S--------------------S-S-S------S---------S-----------------------------
--------------------------------SSSSSS----------------S-------------------------
--------------------S-----------------------------------------------------S-----
-----S--------------------------------------------------------------------------
------------------------------------------------------------------S-------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------S-----
------------------------S----------------SS------S-S--------S-------------------
--------------------------------------------SSS-------------S-------------------
------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS----S-------------------------------------------------------------
---------------------------------------------S----------------------------------
--S-----------------------------S---SS----------------S----S-----------S--------
--------------------------S----SS-----------------------------------------------
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--------------------------------------S-----------------------S-----------------
----------------------------S------------------S--------------------------------
---------------------------------------------------------------S------------S---
-----------------------S----------------S------------S----------S---------------
S-----------------------------------------------
>forward_454
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----------------------------------TTTGGATCAGGGCCGTCATG--------------------------
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>reverse_1806
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---------------------------------------------CACATGTTGTTGCGGCAGTA---------------
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