>input_sequence_78145
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---------------------------------------------------------------ATGGAGTACCAGGGGCA
GCACGGCCACGCCACCGACAAGGTGGAGGAGTACGGCCAGCCCGTGGCCGGGCACGGCGGCGCCACCGGCGGCCCCACGG
GGACGCACGGAGCTGCCGGAGCCGGAGGCGC---------------------GCAGCTCCAGGCGACGCGGGACGAGCAC
AAGACCGACGGCGTTCTGCGCCGCTCCGGCAGCTCCAGCTCCAGCAGCTCGGTAAGCTCCCGGGCAGATCTAGCGCTGCA
TATACCGTGTAT-----------TCCATCATCTTAAC-TTGTTGTGCTTGTGTACG--------TACGTAGTCTGAGGAC
GACGGCGTGGGCGGGAGGAGGAAGAAGGGGATGAAGGAGAAGATCAAGGAGAAGCTCCCCGGCGGAGCCCACAAGGACGC
CACCGCCGGGCAGCAGCACACGGCGGTGGCGGGCGAGTACGCGGG------------CACGCACGGCACCGAGGCCACCG
GCGAGAAGAAGGGCGTCATGGACAAGATCAAGGAGAAGCTTCCCGGCGGACAACACTGA---------------------
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>chr5A_1_TraesCS5A01G369900
ACCAGTAGGTGATCCGTCATGCTTGGACTTTGATTTCATGTTGGTATGATTGTTGAACTATGATTTGTTTTGTTTTGTCA
TATTTGTTTCAAACTATTGAATGTGATGAATTTATAACCTATGATCAACATGCATGAATTTAATGATCCACATTTATAAG
GGGTCAACATGCTCGTGGATGTGTAGGAGCCGGATTTGTCAAGTCCAGCTGTAGATGCTCCCAACATTCTTATATCGTTT
AGTCATTTTATGTGCTTGTGACTTTCTTATTTCTTAATTCAAAGTTGGACTCATGTCTTGATCCTTCATTCTAAAATTCT
TCGTACACGAATCAATCTGTGG--------TTGGATGGTTAGGAGGACAGTGGTATTCTTAGTCCATCAGGATTTAAGTC
CTAATGCTCGCATTATTTTTGGATTTATTTCAGAATTTTCAGCGATGTGCTTTCAGTGAAAAGAGACATTCCCGTCGACG
ACGAATCTTTCGAAGGTGCTCATACAGATAGGAAATGCATATTTATGTTCATAAAGTTGAGTGTATGCACGTGTATATAT
ATATGAACGCTTGCGTCGTACACTATATTCCTTTG---------------------------------------------
--------------------------------------------------AAAAAAAAACTCTACGCCTGTCGAT-----
--CGAGGAGTAAGACAATTTCCACGTAGCACGCACGCTGTACCTAGCTAACATCTGTTCATCCATGAACGCGTCGATGGA
CTAGTCAGGTAGTCATGCCCTTC--------------GAGAATGTCCGAAGACGTACGTGGCGCCGCAGACGACTCCGCG
TGGCATGCAGCCGCACCTTTTACTCTCGCCGGCTTT--------GTTTATTGGCCGAAGGATAGCCGCTCCACTA-----
-------TACATGCACGC--------ACACGT---CCTTCCACCTGCTT--------------------GAACACCTACG
ACCATTATAAACAGACCATCCGGACAGCTTTGCACTTATCTCCATCGCAGTTCGCAACAGTTCAACAC--------ACTT
ACACAACCACACGTATCACCTCTAGATCGATCACATTTCGTAGTCCGTACCACGTCCGACGATATGGAGTACCAGGGGCA
GCACGGCCACGCCACCGACAAGGTGGAGGAGTACGGCCAGCCCGTGGCCGGGCACGGCGGCGCCACCGGCGGCCCCACGG
GGACGCACGGAGCTGCCGGAGCCGGAGGCGC---------------------GCAGCTCCAGGCGACGCGGGACGAGCAC
AAGACCGACGGCGTTCTGCGCCGCTCCGGCAGCTCCAGCTCCAGCAGCTCGGTAAGCTCCCGGGCAGATCTAGCGCTGCA
TATACCGTGTAT-----------TCCATCATCTTAAC-TTGTTGTGCTTGTGTACG--------TACGTAGTCTGAGGAC
GACGGCGTGGGCGGGAGGAGGAAGAAGGGGATGAAGGAGAAGATCAAGGAGAAGCTCCCCGGCGGAGCCCACAAGGACGC
CACCGCCGGGCAGCAGCACACGGCGGTGGCGGGCGAGTACGCGGG------------CACGCACGGCACCGAGGCCACCG
GCGAGAAGAAGGGCGTCATGGACAAGATCAAGGAGAAGCTTCCCGGCGGACAACACTGAGCCAGCTATGCATGCGTGTCT
CTATGTTCCGTCAAAGCTCGGCT-----AGCATTTGCAGCCATGCT-TTACTACGGATAATAAATAATAAGTACAATGGA
CTCCGATGTACGTTGTGTGTACGACCGCGTCCGTGTGACGCATTTGTGTATTCGTATACGGTATGATGTGTGTACATACA
TCGTAATAGAAAAACGTTTGTGTATGTTGTGTTTTTGTGGTAAGCTATGTACGTATTGGAGTATAAAGTACTTTGACACT
GGCACGAACGACTAACTCATCATCAGGCTAGGCAAGATTATACCGACAGTGCGCCAGGCGCAGGCAGCTCGGCGACGACT
CGCGCGCAGCTGCATCGAGTGTTGCAGATAAACAAAAGTTCAGTTTCGTCAGTGTTAGGTGTCGGGTTTCAGTTACGACA
GTCTCGACGGCACTGTTTTGTTTTCTTCAGTTCCGTCAGGAAAATAGTACTGTAGTGTTTTCTTTTCTTCAGTTTCGTCA
GGAAAATACTCCCTCGTTTGAAAATATTTGTCTTTGAAATGGATAAAATGGATATATCTATAAATAAAACAAGTCTAAAT
ACAACCATTTCTAGAACAAGTATTTCCGAACGGAGGAGGTAGTATTGTAGTGTTTATTTTCTTCAGTTTCGTCAAGGAAA
ATAACCGGGCTGCTACAACGCCGGGCGCCTGTGCAGGCGCTAGGATTTATTTCCAGCCCATTTAGCAGTTGCACTGCTAA
ATCCTGGTGTCGGAAGTGGCATCGCTGCCAAAGTATGCGTCGAGTGCTTGGGCGTTTTTCTTCCCGCAATAAGCGCACAG
GCTGTTCGCTTTAGTCCAGGTTATTAGCGTCTACCTTTGGAAGCTTGTAGGATCAAGAAGTAGATGTGTTTAGAGAGGGA
TGATTAGACACTTCATTCTAAAGTTGCAATTTTAAAATTTTTTAGATTTAAGTGGAGTTTAGGCACAATTTTAACACACA
CAATACATATCAAGCAGGCATGCAA
>chr5D_166
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-----AACATGCCCGTAGACGTGTAGGGGCCGAATTTGTCAAGTCCAGCGGTAGATGCTCTGAGCATCTTTATATCGTTT
GGTCATTTTGCGTGTTTGTGACTTTCTTATTTCTTAATTCAAAGTTTTAAAAGTTAAGCTACCAACACTACATTAGGGCT
CCTTTGATTCAAAGGAATTTCGTGGGACTTTTGGAGGGTTAGAATCC---------------------------------
-----------------TTAGGATTTTTTCCTACATTTGTCGTTTGATTCACATGATTGAATCCTATAGA----------
----------------------------------------ATTTTTTTCTATGGAGTTGAGTGTACTATATTTTATTGAA
AATCTAACATCCACTCCAACCACTTTTTCAATTTCTTTGTTTTTTTAGCATCAAACACTCTATGCTAATCCTATAGAATT
TAAGTGGACATGCCACTCAAATCCTCTATTCTGATCCTTACTCGCCCAAAAGAAATGAGCTCTCCCCCTGTCGGTCCTCG
GTCGAGGAGCAACAAATTTTGCACGTAGCACGCACGCTGTAC----CTAACATCTATCCATGCATGAATGCGTCGATGGA
CTATCCAGGTAGTCATGCCCTTC--------------GAGAAAGTCCGAAGACGTACGTGGCGCCGCAGACGATGCCGCG
TGGCATGCAGCCGTACCTTTTACTCTCGCCGGCTTTGTTTATGGGTTTATTGGCAGAAGGATAGCCACTCCACCAGAATG
ATGCCCATACACGCACGCACACGTTGACACGTACTCCTTCCACCTGCAAAGCCAATGCATCTCGAACTCGAACACCTAT-
ACCATTATAAATAACCATC-----CAGCTTTGCACTTCTCTCCATCGCAGTTCGCAACAGTTCAATACACTTACTGACTT
ACACGACCACACGTATAATCTGTAGATCGATCGCTGTTCGTACCACCACA-------------ATGGAGTACCAGGGGCA
GCACGGCCACGCCACCGACAAGGTGGAGGAGTACGGCCAGCCTGTGGCCGGGCACGGCGGTTTCACCGGCAGGCCCACGG
GGACGCAC------------------GGCGC---------------------GCAGCTCCAGGCGACGAGGGACGACCAC
AAGACCGACGGCGTCCTTCGCCGCTCCGGCAGCTCCAGCTCCAGC---TCGGTAAGCTTGCGGACGGATCTTTCGCTCCA
TATATTGTGTTGTGTCACTCCACT--ATCATCTTAAC-TTGTTGTGCCTGTGTACG--------TATGTAGTCCGAGGAC
GACGGCGTGGGCGGCAGGAGGAAGAAGGGGATGAAGGAGAAGATCAAGGAGAAGCTCCCCGGCGGAGCCCACAAGGACGC
CACCGCCGGGCAGCAGCACACGGCGGTGGCGGGCGAGTACGCGGG------------CACGCACGGCACCGAGGCCACCG
GCGAGAAGAAGGGCGTCATGGACAAGATCAAGGAGAAGCTTCCCGGCGGACAGCACTGAGGCAGCTATGTGTGTCT-TCT
CTGTGTTCCGTCCAAGCTCGGCTTGGCTAGCATCTGCAGGGATGCCGTTACTAGGGATAA------------ATAATGGA
CTCTGGTATACCTCGTGTGCACGAGCGCGCCCGCGTGACGCATTTGTGTGTTCGTAT--GGTATGATGTGTGTACATCGT
AAT------AAAAACGTTTAT-----TTGTGTTTTTGTAGTAAGCCATGTAC----------------------------
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>chr5B_674
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---------------------------------------------------------------ATGAATGCGTGGATGGA
CTAGTCAGGTAGTCATGCCCTTCGAGAAGAGCGCTTCGAGAAAGTCCGAAGAGGTACGTGGCGCCGCAGACGATGCCGCG
TGGCATGCAGCCGTACC----------GCCGGCTAT--------GTTTATTGGTAGAAGGATAACCACTCCGCCA-----
-------TCCATGCACGC--------ACACGTACTCCTTCCACCTGCAAAGCCATCGCATCTCGAACTCGAACACCTACG
ACCATTATAAATAACCATC-----CACCTTTGCACTTATCTCCATCGCAGTTCGCATCAGTTCAACACACTT--------
GCACAGCCACACGTATCACCCGTAGATCGATCACTGTTCGTACCACCCCA-------------ATGGAGTACCAGGGGCA
GCACGGCCACGCCACCGACAAGGTGGAGGAGTACGGCCAGCCCGTGGCCGGGCACGGCGGTTTCACCGGCGGGCCCACGG
GGACGCAC------------------GGCGCCGCCGGCACCGG------CGCGCAGCTCCAGGCGACGCGGGACGACCAC
AAGACCGACGGCGTCCTGCGCCGCTCCGGCAGCTCCAGCTCCAGC---TCAGTAAGCCCCGGGACAGGTCTATGGCTCCG
TATATTGTGTTGTGTCGCTCCACTCCATCATCCTAAC-TTGGTGTGCTTGTGTGCG--------TGTGTAGTCTGAGGAC
GACGGCGTGGGCGGCAGGAGGAAGAAGGGGATGAAGGAGAAGATCAAGGAGAAGCTCCCCGGCGGAGCCCACAAGGACGC
CACCGCCGGGCAGCAGCACACGGCGGTGGCGGGCGAGTACGCGGG------------AACGCACAGCACCGAGGCCACCG
GCGAGAAGAAGGGCGTCATGGACAAGATCAAGGAGAAGCTTCCCGGCGGACAGCACTGAGCCAGCTATGCGTGTCT-TCT
CTATGTTCCGTCAAAGCTCGGCT-----AGCATCTGCAGCCATGCCGTTACTACGGATAG------------ATAA----
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>chr5B_895
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-----------------------------TTGCACTTGGCTGCATCGCGACTCGCAGCAGTTCAACAC--TT--------
ACACAGCCATACACATCACCAGTAGATCGACCGGTGTACGTAAGGCGACA-------------ATGGAGTACCAGGGGCA
GACCGGCCACGCCACCGACAAGGTGGAGGAGTACGGCCAGCCCGTGGCCGGGCACGGAGGCGCCACCGGCGGCCCCACGG
GGACGCAC------------------GGCGCCGCCGCCGCCGCGGGCACCGGGCAGCTCCAGCCGACCAGGGACGACCAC
AAGACCGACGGTGTCCTGCGCCGCTCCGGCAGTTCCAGCTCCAGC---TCGGTGAGCCCAAGGACAGATCTGCCTGCCGC
TATATACATCGACTCACTCGA--CCGGTCATCTTAACCTTGCTGTGCTTCTTGCTGTGTTAAAATGTGTAGTCTGAGGAC
GACGGCGCTGGCGGGAGGAGGAAGAAAGGGATGAAGGAGAAGATCAAGGAGAAGCTCCCCGGCGGAGCCCACAAGGACGC
CACCG---GGCAGCAGCACACGCCGGCGGCCGGCGAGTACGCCGGGACCGGCACCGGCACGCACGGCGCGGAGGCCACCG
GCGAGAAGAAGGGCGTCATGGACAAGATCAAGGAGAAGCTTCCCGGCGGGCAGCACTAAGC-------------------
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>chr5A_897
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-------------------------------GCACTTGGCTGCATCGCAACCCGCAGCAGTTCAACAC--TT--------
ACACAGCCATACACATCACCTGTAGATCGACCGGTGTCTTAC--GCGACG-------------ATGGAGTACCAGGGGCA
GACCGGCCACGCCACCGACAAGGTGGAGGAGTACGGCCAGCCCGTGGCCGACCACGGCGGCGCCACCGGCGGGCCCACGG
GGACGCAC------------------GGCGCCGCCGCCGCCGCGGGTGCCGGGCAGCTCCAGCCGACCAGGGACGACCAC
AAGACCGACGGCGTCCTGCGCCGCTCCGGCAGCTCCAGCTCCAGC---TCGGTGAGCCCAAGGACAGATCTGCCTGCCGC
TGTATAGATGGACTCACTCGA--TCGGTCATCTTAAC-TCGTTGTGCTTCTTGTTGTGTTTAAA-ATGTAGTCTGAGGAC
GACGGCGCTGGCGGGAGGAGGAAGAAAGGGATGAAGGAGAAGATCAAGGAGAAGCTCCCCGGCAGAGCCCACAAGGACGC
CACCG---GGCAGCAGCACACGCCGGCAGCCGGCGAGTACGCCGGCACCGGCACCGGCACGCACGGCGCGGAGGCCACCG
GCGAGAAGAAGGGTGTCATGGAGAAGATCAAGGAGAAGCTTCCCGGCGGACAGCACT-----------------------
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>chr5D_994
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---------------------------------------------CGACA-------------ATGGAGTACCAGGGGCA
GACCGGCCACGCCACCGACAAGGTGGAGGAGTACGGCCAGCCCGTGGCCGGGCACGGCGGCGCCACCGACGGCCCCACGG
GGACGCAC------------------GGCGCCGCAGCCGCCGCGGGCACCGGGCAGCTCCAGCCGACCAGGGACGACCAC
AAGACCGACGGTGTCCTGCGCCGCTCCGGCAGCTCCAGCTCCAGC---TCGGTGAGTTCAAGGACAGACCTGCCTGCCGC
TATATACACAGACTCACTCGA--TCGGTCATCTTAAC-TCGTTGTGCTTCTTGTTGTGTTAAAATGTGTAGTCTGAGGAC
GACGGCGTTGGCGGGAGGAGGAAGAAGGGGATGAAGGAGAAGATCAAGGAGAAGCTCCCCGGCGGAGCCCACAAGGACGC
CACCG---GGCAGCAGCACACGCCGGCGGCCGGCGAGTACGCCGGCACCGGCACCGGCACCCACGGCGCGGAGGCCACCG
GCGAGAAGAAGGGCGTCATGGACAAGATCAAGGAGAAGCTTCCCGGCGGACAGCACT-----------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-------S---S--S-------S----S----------------S----------SS-S---SS-----------
S--------SS---S-------------------------------SS-SSSS-SSSSSS-S-SSSSS-S-SSS-SSS--
S-S-SS-SSS-SSSSSS-S-S--------------S------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS--S------S--S-SSS----SSS-SSSSS-S-SSSSSS-SS--SSSS-S-SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-S-SS--SS-----------SSSSSS-S---SS-S
-SSSS---SSSSS-SS-SSS----S-S-SSS---S---------------------------------------------
---------------------------------------------------S---SS-S----S-S-------S------
---------S--S-S-S---S---------------------SSSS---------S-S---S------S-----------
------------------------------------------S------------------------------SS-----
-------------S----------------------------------------S-----------S------S------
-----------------------------------------------SS-------------------------------
-----------S-SS-SSSSSSSS--------------------------------------------------------
---------------------S------------SS------SSS--SSSSSSSSSSSSSSSS-----------------
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--------SSSSSSSSSSSSSSSSSS--------------------------------------------------S---
--------------S------------------------------SSS---------------S--------S----S--
----SS----SS------------------------------------------------------S-------------
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----------------------------------------------------S-----------------S--SS-S---
---------------------------------S-----------S--------------SSSSSSSSSSSS-S------
---S-S-S---S-S-----S----S----S---S---------------S-------SS------------------SSS
SSSSSSSSS----------S-SSSSS------------S------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_585
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-----AACGCTTGCGTCGTACACTA-------------------------------------------------------
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>reverse_2506
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-------------------------TGCCAAAGTATGCGTCGAGT-----------------------------------
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