>input_sequence_78137
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ATGGAGGCCAAGCTCGTAGTGATCCTTGCG
GCCTGCATCTTGCTTTCCT---TCAGCAACAAAGGTACGCACTGACT----TATACAAACTG-TTTTTGCACACAAAAGG
AAAGT----------------------AAAACAAACACCAGGAACTAACAATTGGGCAACGCAGGCGATGCCCAGCCGTG
CACACCGTCGGATCTCCTCGTCAACCAAACCACCATGCCGGGGGAGGTCGGAGGGCGCCCGCACTACCTGGTGACGGTGG
AGAACAGGTGCGTCTGCACGCAGCTCGGCGTGAAGCTGGCGTGCGCGGGGCTCAACTCCACCGTCACCGTCGACCCGGCC
GGCGTGGTCGCGCCGGCCGGGGACGACGGCGCGCTCTGCACCCTCAACGGTGGCCAGCCGATGCATGCAAACGAGACGGT
CTTGTTTGCGTACGCGTCGAGCGCGAAGATCAGCTTCAGGCCCGTCTCGTCCTACGTCGACTGCTCCGTAGCCCTCTCGC
CGGCTCCGCAGGCTGCACCATGA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>chr1A_1_TraesCS1A01G307600
ATATTAGTTTATGCATCATGAAATTAATTTTCATGTCATATAGCTTTAGTTTTGTAGATGTTGATATTTTTTCCAACAAA
GTTGGTCAAAATTTATAAAGTTTAACTTTGATCAAATCTTATATGCAGACTAAAAAAAATAGAGG-GAGTACTTGAAGTC
TCCCGTCCTAGACCTGCTAATGCAACTAGTGGTACAGGGCCGGGTCCAGATCTCGAGCAGTTGTTCTCTTGATGGACGGG
GTTGATAACCGGGTGCGTAAACACCAGGGTATTCGAAATCCATTCTTGTTGGAACCAACACTAACTTTTGCTACCACTGT
CTTAGGTTTTGTTAGAACCAGCCCACATTTTTGCTACCCCTAGCTTTGGCTATAACTGACGCTGGCGTCGCCATTGATGC
TGAACCCGAGGGTGGGCAGAACCGGCGAGGAAGGGTGTCGCGGTCAGCGTTGTGGAGCTACCATGGATGCAACAGCGTGG
TGGCGAAAAAGTTGCTACGGCCAACGGCCTTTTTGTTTTGTGATTGACGACAGCGAGTGTCGGGGGCGAGGCAAACATGC
AAGGGTGGCCCGCTCGGGCGCCTGGCATGAGGGAGTGAGCGTAGACACGAGGGAGGGGACAGTTGCCATGGTATTTTCTC
GTATTCTTTTCAGATGTGAACGAGGTG-AAAGACGATTGGAAACCAAGCCATCGGCAACCGGCATCTATTATTGGCCAAT
TTTTT-AATATTGAAAGCAATGAATGCCAGGACCAAACATTTGTCGTTTAATAATTGCTCATTATTCAAACATTGGATAT
TTTTAAATGCTAACTTATCTTATAC------CATGAATCAAATTAATTCTCCCCAATCAATAAAAGACTGCCTCA-TTTT
CACCGCACAGTGGGCTATAAAAGGCAACCGTGATGCAGAACAGAAACACAACACAATAGTATACATCAACTGTGACAGCA
TCTCAGTAATACAATTTGTCAAAAACTGTGACAACATCTCGGTGATCAGCATGGAGGCCAAGCTCGTAGTGATCCTTGCG
GCCTGCATCTTGCTTTCCT---TCAGCAACAAAGGTACGCACTGACT----TATACAAACTG-TTTTTGCACACAAAAGG
AAAGT----------------------AAAACAAACACCAGGAACTAACAATTGGGCAACGCAGGCGATGCCCAGCCGTG
CACACCGTCGGATCTCCTCGTCAACCAAACCACCATGCCGGGGGAGGTCGGAGGGCGCCCGCACTACCTGGTGACGGTGG
AGAACAGGTGCGTCTGCACGCAGCTCGGCGTGAAGCTGGCGTGCGCGGGGCTCAACTCCACCGTCACCGTCGACCCGGCC
GGCGTGGTCGCGCCGGCCGGGGACGACGGCGCGCTCTGCACCCTCAACGGTGGCCAGCCGATGCATGCAAACGAGACGGT
CTTGTTTGCGTACGCGTCGAGCGCGAAGATCAGCTTCAGGCCCGTCTCGTCCTACGTCGACTGCTCCGTAGCCCTCTCGC
CGGCTCCGCAGGCTGCACCATGATGTCTAGATACTTCCTCCCATTCTTTTTAAGTCTACATATAATTTTTGTTCAAAGTC
AAAGTATCTTTATTTTAACATAACTTACAGAAAAAAAATATCAACATTTACAATATCAAATTAATATTGTTAGATTCATG
CGAGAGTATTAAATGTTATGTGCCTGGGCACCTAGGTGCCCCAAACATATATATAGTATTGTAGTTGTTGATATTTTTGA
AAATAAATTTGATCAAACTTTGCAAAGTTTGACTTAATCCAAATCTAATAAGCGGAATAAAAATGACCGGAGGGAGTACT
CCGGCAGACATGCAACGACAGATGTTTTATTAAACGGAGGCAAGGACTCTATGTAAATTTTTTTAATGAAAACATGCGCA
CAGCTTCCTCTCAAACGGCGTCACAGGGTGATGTCCCAAACACTAGTCTTGTTTCATTTGTTCGCCCTCGCCGTTGCATA
CCGTGCATCAAAACTCAAGCGATGACCATGGTCATGGCCAGGTGGTCGAAATTGTCCAGCAGGCGATGAAAACATTTTAT
TTCATTTTTTGAGAAAACAAGAGCTTGTATTTGGGATCACAATCACAATAGTGGAAGGGAAAAGCAGGCTCACGATCACG
AGCACCACAAGCATCACAAATTTCACGCCTTTGGTTTTTGCCCAATGACCATAATCTCGCAATCTGCTCGGTCATTTTCT
AAAGCGGCACCAAAAGGTTCGGGCCTTTGATTATGGTCACTGATCTCGAAGCAGGTTTTTGCCCAGTGACCATAATGTCA
CAACCTCTCTAGGACACCACAAAGGGGGCACAGTCCATCGATAGGCCCATGTCATTTGATGACCTCAGTCCTCGACGGGA
GACAATCAGGCATAAACTGCCACACAAAGATCTTGATCTTAAAATGGGAGGCGTTTTGCACAAAGGTGTGGACCACAGAA
AGAGTCAGTGCACGACATAGAGTCTGGTATGCCGAGCCGGTAGAGAACACCCCTGACGAGGAC
>chr1D_84
--------------------------------------------------------------------------------
---GGTCAAACTTTATAAAGTTTAACTTTGACAAAATATTATATGCAGACTAAAAAGAAACGGAGAGAGCATTTGCAGTC
TCCCGTCCTAGACCTGCTAATGCAACGTGTGGTACAGGGCCGGGTCCAGATCTTGAGCAACTGTTCTCTCGACGGACGGG
ACTGATAACCGGGTGCCTAGACACC-GGGTATTCAAAATCCATTATTGTTGGAACCAACATCAACTTTTGCTATCACGGT
CTTAGATTTTGCTAGAACCAGCCCACATTTTTGCTACCCCTAGCTTCGGCTATAACTGACGTTGTTGTCGCCATTGATGC
TGCAACCGGGGGTGGGCAGCACCGGAGAGGAAGGGTGTCGCGGTCGGCGTTGTGGAGCTACCATGGATGCATCAGGGAGG
CGGCGAAAAAGTTGCTACGGCCAACGGCCTTTTTGTTTTGTGATTGACGACGTCGAGCGTCGGGGGCGAGGCAAACGGGC
AAGGGTGGCCCGCTCAGGCGCCTGGCATGAGGGAGGGAGCGTAGACGCGGGGGAGGGGGCAGTCGCTATGGTTTTTTCTC
GTGTTCTTTTCAGATTTGGACAAGGGTAAAAGACGATTGGAAACCAAGCCATCGGCGACGGGTGCCTATTATTGGCCAAT
TTTTTTAATATTGAAGGCAATAAATGCCAAGACCAAACATTTGTCGTTTAATAATTGCTCATTATTCAAACATTGGATGT
TTTTAAATGCTAACTTATCTTATACTCCTACCATGAATCAAATTAATTCTTCCCAATCAATAAAAGACTTCCTCATTTTT
CACCGTACAGTGGGCTATAAAAGGCAACCGTGATGCAGAACAGAAACAGAATACAATAGTATACATCA------------
TCTCAGCAATACAGTT-GTCAAAAACCGTGACAACATCTCGTTGATCAGCATGGAGGCCAAGCTCGTACTGATCCTTGCA
GCCTGTATCTTGCTTTCCTTCATCAGCAACAAAGGTACGCATGTACTATAGTATATAAACTGTTTTTTGCACACACAAGG
AAGAGGAACTCGGCATTTCCGGACACCAAAACAAACACCAGGAACTAACAAGTGGGCAACGCAGGCCATGCGCAGCCGTG
CGCACCGTCGGATCTCCTCGTCAACCACACCACCATGCCGGGGAAGGTCGGAGGGCGCCCGCACTACCTGATGACGGTGG
AGAACAGGTGCGTCTGCACGCAGCTCGGCGTGAAGCTGGCGTGCGCGGGGCTCAACTCCACCGTCAGCGTCGACCCGGCC
GGCGTGGTCGTGCCGACCGGGGACGACGGCGCGCTCTGCACTCTCAACGGCGGTCAGCCGATGCATGCGAACGAGACGGT
CTTGTTCGTGTACGCTTCGAGCATGGAAATCAGCTTCAGGCCCGTCTCGTCGTTCCTCGACTGCTCCATAGCCCCCTCGC
CGGCTCCGCAGGCTGCACCCTGATGT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-------S--------------------SS----S------------------S--SS-SS-----S-S---S----
--------------------------SS-------------------------S-----SS--------S--S-------
SS--------------S--S-----S--------S---------S---------------SS-----------S---S--
-----S-----S----------------------------------S--------------S--SS--------------
--S-S---S----------S-----S-------------------S-------------------------S---S-S--
S--------------------------------------------------SS----S------------------SS--
---------------S-------------------S----------S--S--------S----S--S-----S-------
--S------------S--S--S---SS-----------------------------S--S--SSS---------------
---------------S-----S-------S------------------------------------------------S-
--------------------------------------------------S------------------S----------
-----S------------------------------------------S--S----------------SSSSSSSSSSSS
------S------S--S---------S--------------S--------------------------S----------S
-----S-----------------------------------SSS-----------S-------------------S----
--SSS----------------------------------------------S--------------S----S--------
-S-------------------------S---------------S--------------------------S---------
------------------------------------------------------------------S-------------
----------S----S-------------------------S--------S--S--------------S-----------
------S-S------S------SS-S-S-----------------------S-S-S-----------S------S-----
-------------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_478
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TACCATGGATGCAACAGCGT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_2293
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AGGTTTTTGCCCAGTGACCA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
