>input_sequence_78131
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-----------------------------------------ATGCAGCAAGAGCTTGCCGCCCTGGCGTACCAGTCGGCC
GGTTTCGTCGGCCTCCCCACGTCCTACCTGCCGCCGCACCCGCACGACGTCGATGTCGACCTCGTCGACGGGTGGTTGGT
CGGCGGCAGCGCCGGGGCTGGCGACAATGGCCACGGCCCGCCGTCGTGCGGCAGCGGCCTGAGCCACGTCGCCGGCGCCG
CCGCGGCAGTGAGCGAGACGAGGAAGGCGAGGCGGCTGGCGTCGAACCGCGAGTCGGCGCGGCGGTCGCGGATGCGGCGC
CGGAGGCAGCTGGACGAGCTGTCGGCGTGCGCCGCGGAGCTGCGCGCGGCCAACCAGCGGCTCGTCGTGGAGCTCAACCG
CGCCGAGGCCAGGCACGCGCAGGTGGCCCGGGAGAACGCGCGGCTCCGGGAGGAGCTGCGCCGCCTGCGGGAGAGGCTCG
CCGCCGAGGAGGAGACCACCGATCGAG---------ACGCCGGCGACGAGGCCGCTGCCGCAAGAACGCCGTAG------
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>chr7B_1_TraesCS7B01G293700
TATATACTCAAAGCTAAGATGTGTATTAAGATCAAGATATCGACATAAACCGGCACCATATTTTCTTGAGGCTGTAGGTA
AAGCT-AGCTCTCTACGGACCTAACCGGAAGGCATCAAGATCAAGAGCACTAACTAGG------TC--------------
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------------------------------------TCTACACGAGGAGGGACTGACCAAACAGTGCCATAAACCTCTGA
CGCCGCATCATGC-ACCAAGTCTAAGTGGTGGCCAAACAGCGGCTGGGGTCCTGGCATCTGGCCTTGTTTA--TACTAGC
ACTGTGTGGCGTCACTATGCAGTGCTCTTAT--TGTTGCAATATCTTGCACAAAGAC-----AAAGGCCTAAAAGGCAAT
TCCATCGCGTTGCCATGCCAGTTGCCGCGACAACAGAAAAGTTTGGCTGAAGATCGACCCTC------------------
-TATTAGGAG---AAAATTTCCTAGC-------CTATAGCCAGCCAAGTCACTAACGGAAATTAACAGGGCAAGATGTTC
AGACTCCACGATTTAACCTCTGCAACCGCCAAGAAAACGATGCCTCTCGATGGTGAATTGGTGATC---TACGATTCAAT
GCGACCAACCTTCGCAAAATTCTC--------------------GGAAGCGCCGCGACTTCGCTCGATCGACACCGCACG
GGAACAACACTTCCGAAACAAGGAGAAAACTTAAGCCTATCTTGACGACGACGAGGATCTAT----TCTA---TGCTGCT
AGCAAAGAGTTTACCGCAACCGAACCGCGGACAGCGACTGATCCCAGAAAAACCATCAGGAT--------AGGTAATAAC
AAAGCGCAGACGCAATGGCAATGGGGCTCCAAAAGGGGCAAAGTTTGCT---GACCGCATCGGCGGTGC----CAGTGGC
CAGTGGTGGGCTAAGCTCTCCCTTTT----CGCGGTTTAAAGCGGCTCGCAGCC----TTTTCTCCTTCCCTTCATCCAT
TCGACGCGGCCGGAGAGTGAGAGAGAGTGGCCTCCTGCGTACACTACTTGGCATAACAACCAATCTCCACAG--------
----CAGCATTGCGATCTGCGGGTCCGCGGCGGCGCCGGCCATGCAGCAAGAGCTTGCCGCCCTGGCGTACCAGTCGGCC
GGTTTCGTCGGCCTCCCCACGTCCTACCTGCCGCCGCACCCGCACGACGTCGATGTCGACCTCGTCGACGGGTGGTTGGT
CGGCGGCAGCGCCGGGGCTGGCGACAATGGCCACGGCCCGCCGTCGTGCGGCAGCGGCCTGAGCCACGTCGCCGGCGCCG
CCGCGGCAGTGAGCGAGACGAGGAAGGCGAGGCGGCTGGCGTCGAACCGCGAGTCGGCGCGGCGGTCGCGGATGCGGCGC
CGGAGGCAGCTGGACGAGCTGTCGGCGTGCGCCGCGGAGCTGCGCGCGGCCAACCAGCGGCTCGTCGTGGAGCTCAACCG
CGCCGAGGCCAGGCACGCGCAGGTGGCCCGGGAGAACGCGCGGCTCCGGGAGGAGCTGCGCCGCCTGCGGGAGAGGCTCG
CCGCCGAGGAGGAGACCACCGATCGAG---------ACGCCGGCGACGAGGCCGCTGCCGCAAGAACGCCGTAGGATCCG
TACGTACGTA-CGCATGTGCTCGCGATCGTAGTCTATATACAC-TAGGACGATGATATATGCCATCACCATGAGGAGATT
AACTATCGGACGTGTGAATA-TTATGTAGCTCG---ATTGTGTTTTCATTGATCGGGCTCTTGGGATTGTTCACTCCTGC
TTCTGTGAGTTGCTATTCCGTATCTGTTAATTTCGTTCTTTGGCCGCAACATCGT-----------------TGGTGAGT
GATACTACCACTGTCCTACAAGTCCCACTGTTGAATGATCGACGATGGCCTTGGTGTTCTCTAGCTGCCGGCGACAGCGA
CGTTGAACGCCGTCCAGCCGCCGGACGTGGGCAGCCAACTCGCCATAGACCATCTAGTTGCTGCATCCGGAGCAGTAAAA
CTAAAACCCCGGTCAACAGGAAGATTAACCGGTGTCCACGAGAGATTCAGAAGATGTTGCGCGTCAGACACCTCCTCTGT
ACAGGACAAGACGGCGGCGGCATGTCAAAGTGCCAACCTTCGGTTGTTAGGGGCATCAGCACTAGCG-------ATCAGC
GTGCGCCAGCTCTATCTCCACGCGCGAAACACCAGCGATCAGACTAGCATGATGTGCACA--AGAGTTTAGAGCATCTCC
GGCCGTTGGCCCCCCCGGGGCGCGTAAAATCGCCGCCTGAGGGCGAGCCGGCGCAAAAAAAGGCCTGAGGGCGAGTTGGT
TTCCAGTCGCCGACCCCATGGCCGCCCCCGGACGGCGTCTAGTTTTTTTAATAAAAACTCATTCGGCGAAGTTTGCATAA
ACTCGGCTAAAATTCGGCAAACTTGGCATATATTAGACATGTTCGCGGTTTACATAGCAAATTTATATTAAAAAAATCCT
AACTAAGGGGCGAAGAAGTCGTTGAACGCGGAGTAGTCGCTGCCATCCTCGCCGCCGTCGTCGGCGGTGGCCTTCTCCTC
CTTGACGTGGCCGCCCCTGCTGGACCCCTGGCCGACGTCGCCAAGGCGGACCGGTGGCGGTGGTGG
>chr7B_1
TATATAGTCGAAGCTAAGATGTGTATTAAGATCAAGATATCCACATAAACCGGCACCATATTTTGTGGAGGTTGTAGGTA
AAGCT-AGCTCTCTATGGACCTAACCGAAAGGCACCAAGATCAAGAGCACTAACAAGG------TATCTACTGTTGGGTT
TAGTCCCACATCGGTTGTGGGGGGAGACATAACACGACTTATAAGGGCGGGGGTGTCCCCTCTTAATAGGCTAGTCTTTT
GGGGGGAGAGGGCCCAAGGCCTGTCATAAGTCGGTGTTGCTCTCCGGTTGGGCCTAGTTGACGCATGTGGGTCGGAAACG
CTGGTGATAGCGGACCCGGGATTGCGTAACAATTGGTATCAGAGCCCAGGTGCCCGGAATGAATCTCGGTAGACTCACGG
GTGGTCGGTCATGGTTGATGGGCTGGAAATGCTGGTGTTAGCGGGCCCATGGATGACCGATGTGTGAGACGGAGATTGTT
GGATTTAGTCCCACATCGGTTGTGGGGGGAGACATAACACGACTTATAAGGGCGAGGGTGTCCCCTCCTAATAGGCTAGT
CTTTTGGGGGGAGAGGGCCCAAGGCCTGTCATAAGTCGGTGTTGCTCTTCGGTTGGGCCTGGTTGACGTATATGGGTCGG
AAACGCTGATGATAGCGGACCCGGAATTGCGTAACATCTACACGAGGAGGGACTGACCAAACAGTACCATAAACCTCTGA
CGCCGCATCATGC-ACCC-----AAGCGGTGGCCAAAACAGCTATAGGGTCCTGGCATCTGGCCTTTTTATACTACTAGT
ACTGTGTGGCGTCACTATGCAGTGCTCTTAT--TGTTCCAATATCTTGCACAAAGAC-----AAAGGCCTAAAAGGCAGT
TCCATCGCGTTGCCATGCCAGTTGCCACGACAACCAAAAAGTTTGGCTGAAGATCGGCCCTC------------------
-TAT-AGGAG---AAAATTTCCTAGC-------CTATAGCCAGCCAAGTCACTAACGGAAATTAAGAGGGCAAGATGTTC
AGACTCCACGATTTAATCTCTGCAACCGCCAAGAAAACGATGTCTCTCGATGGTGAATTGGTGATCTAGTACGATTCAAT
GCGACCAACCTTCGCAAAATTCTC--------------------GGAAGTGCCGCGACTTCTCTCGATCGACACCGCACG
GGAACAACACTTCCGAAACAAGGAGAAAAC-TAAGCCTATCTTGACGACGACGACGATCTAT----TCTAGTATGCTGCT
AGCAAAGAGTTTACCGCAACCAAACCGCGGACAGCGAATGATCCCAGAAAAACCAGCAGGAT--------AGGTAATATC
AAAGCTCAGACGCAATGGCAATGGGGCTCCAAAAGGG-CAAAGTTTGCTGTCGACCGCATCGGCGGTGCATGCCAGTG--
----GGTGGGCT-----CTCCCTTTTCGCGCGCGGTTTAAAGCGGCGGAGATCAG--------TCTTTTCCTCCGTCCAT
TCGACGCGGCCGGAGAGCAAGAGAG--TGGCCCTCTACATACGCTACTTGACATAGCAACCAATCTCCACAGCAGCAGCA
GCAGCAGCATTGCGATCTGCGGGTTCGCGGCGGCGCCGGCCATGCAGCAAGAGCTCGCCGCGCTGGCGTACCAGTCGGCC
GGGTTCGTCGGCCTCCCGACGTCCTACCTGCCGCCGCACCCGCACAACGTCGACGTGGACCTCATCGACGGGTGGTTGGT
CGGCGGCAGCGGTGGGGCTGGCGACAATGGCCACGGCCCGCCGTCGTGCGGCAGCGGTCTGAGCCACGTCGCCGGCGCCG
CTGCGGCAGTGAGCGAGACGAGGAAGGCGAGGCGGCTGGCGTCGAACCGCGAGTCGGCGCGGCGGTCGCGGATGCGGCGG
CGGAGGCAGCTGGACGAGCTGTCGGCGTGCGCCGCGGAGCTGCGCGCGGCCAACCAGCGGCTCGTCGTGGAGCTCAACCG
CGCCGAGGCCAGGCACGCGCAGGTGGCCCGGGAGAACGCGCGGCTCAGGGAGGAGGTGCGCCGCCTGCGGGAGAGGCTCG
ACGTCGAGGAGGAGGCCACCGATCGAG---------ACGCCGGCGACGAGGCCGCTGCCGCAAGAACGCCGTAGGATCCG
-ACGTACGTA-CGCACGTGCTCGCGATCGTAGTATATG--CAC-TAGGACGATGGTACCATA-----TCGGGAGAAGATT
AATTACGGGGCGTGTGAATATTTATGTAGCTGG---ATTATGTTTTCATCGATTGGGCTCTTGGAATTGCTCGATCCTAT
GGCGTTCTTGCACTGCTCCGTATCAGTTAACTTCGTT----GGCTGCAACATCGT-----------------TCTTGAG-
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>chr7D_2
-ATATACTCGAAGCTAAGATGTGTATTAAGATCAAGATATCCACATAGACCGGCACCATATTTTCTTGAGGTTGTAGAGA
AAGCT-AGCTCTCTATGGACCTAACCGGAAGGCATCA-GATCAAGAGCACTAACAAGG------TC--------------
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------------------------------------TCTGCACGAGGAGGGACTGACCAAACAGTACCATAAACCTCTGA
CGCGGCATCATGC-CCCAAGTCTAAGTGATGGACAAACAGCGGCTGGGGTCCTGGCATCTGGCCTTGTTTA--TACTAAT
ACTGTGTGGCGTCACTATACAGTGCTCTTATATTGTTCCAATATCTTGCACAAAGAC-----AAAGGCCTAAAAGGCAAA
TCCATCCCTT-----TGCCAGTTGCCACGACAACAGAAAAGTTTGGCTGAAGACCCTCCGTTTTTGCACACAGAATATAT
TTAT-AGGAG---AAAAATTCCTAGTCTATACTCTATAGCCAGCCAACTCAGTAACGGAAATTAACAGGGCAAGATGTTC
AGACTCCACGATTTAACCTCTGCAACCGCCCAGAAAACGATGTCCCTCGATGGTGAATTGGTGATC---TACGATTCAAT
GCAAC---------CAAAATTCTC--------------------GGAAGTGCCGCGACTTCTCTCGATCGACACCGCACG
CGAACAACACTTCCGAAACAAGGAGAAA-C-TAAGCCTA---------------------------TCTA---TGCCGCT
AGCAAA----TTACCACAACCGAACCGCGGACAGCGACGGATCCCAGAAAAAACAGCAGGATAGGACGATAGGTAATATC
AAAGCGCGGACGCAATGGCAATGGGGCTCCGAAAGGGGCAAAGTTTGCT---GACCGCATCGGCGGTGCATGCCAGTGGC
CAGTGGTGGGCT-----CTCCCTTTTCGCGCGCGGTTTAAAGCGGCGGCGAGCAGCCTTTTCCTCCTTCCCTCCATCCAT
TCGACGCCGCCGGAGAGGGAGAGAG--TGGCCCTCTGCATACGCTACTTGGCATAGCAAC--------------------
----CAGCATTGCGATCTGCGAGTTCGCGGCGGCGCCGGCCATGCAGCAAGAGCTCGCCGCGCTGGCGTACCAGTCGGCC
GGTTTCGTCGGCCTCCCGACGTCCTACCTGCCGCCGCACCCGCACGACGTGGACGTGGACCTCGTCGACGGGTGGTTGGT
CGGCGGCAGCGCCGGGGCTGGCGACAATGGCCACGGCCCGCCGTCGTGCGGCAGCGGCCTGAGCCACGTCGCCGACGCC-
--------GTGAGCGAGACGAGGAAGGCGAGGCGGCTGGCGTCGAACCGCGAGTCGGCGCGGCGGTCGCGGATGCGGCGG
CGGAGGCAGCTGGACGAGCTGTCGGCGTGCGCCGCGGAGCTGCGCGCGGCCAACCAGCGGCTCGTCGTGGAGCTGAACCG
CGCCGAGGCCAGGCACGCGCAGGTCGTCCGGGAGAACGCGCGGCTCCGGGAGGAGCTCCGCCGCCTGCGGGAGAGGCTCG
CCGCCGAGGAAGAGACCACCGATCGAGCGGGAGAAGACGCCGGCGACGAAGCTGCTGCCGCAAGAACGCCGTAGGATCCG
TGCGTACGTA-CGCACGTGCTCGCGATCGTAGTATATG--CACCTAGGACGATGGTACCATAGCATGTCGGGAGAAGATT
AATCACGGGACGTGTGGATATTCATGTAGCTGGATTATTATGTTTTCATCGATCGGGCTCTTGGGATTGTTCACTCCTGC
TTCAGTGAAACACTACTCCGTATCAGTTAACTTCGTT----GGCTGCAACATCGT-----------------TCCTAC--
--------------------AGT-CCCCTGTCGACTAATCGCTGGTGGCCTTGGTGTTGCCCCGCTGCCGGCGACAGCGA
CGTCGGACACCGGCCAGCCGCCGGACACCGGCAGCCAACTCGCCATAGACCATCTAGTTGCTCCATCCG-----------
-----------GTCAACAGGAAGAGTAACCAGTGTCCATGAGAGATTCAGAAGGTGTTGCGCGTCAGACACCTCCTCTGT
TCAGGACAAGATGGCGGCGGCAGGTC-AAGTGCCAACCTTCGGTTGTTAGGGGCATCAGCACTAGCGAATAGCGATCAGC
GTGCGCCACTTCTATCTCCACGTGCGAAACACCAGCGATCAGACCGGCATCATGTGCGCATAAGAGTTTAG---------
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>chr7A_11
----------AAGCTAAGATTTGTATTAAGATCAAGATATCCGCATAAACCGGCACCATATTTTCTTGAGGTTGTAGATA
AAGCCAAGCTCTCTATGGACCTAACCGGAAGGCATTA-GATCAAGAGCACTCACTAACAAGGTCTC--------------
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------------------------------------TCTACACGAGGCGGGACTGACCAAACAGTACCATAAACCTCTAA
CGCTGCATCACGCACCCAAGTCCAAGTGATGGCCAAACAGCGGCTGGTGTCCTGGCATCTAACCTTGTTTA--TACTAGT
ACTGTGTGGCGTCACTATACAGTGCTCTTAT--CGTTCCAATATCTTGTATGCGCAAAGAAAAAAGGCCTAAAGGGCAGT
TCCATCGCGTTGCCACTTC----GCCACGACAACAGAAAAGTTTGGCTGAAGACCCTCCGTTTCTGCACACCGAGTATAT
TTAT-AGGAGGAAAAAAAATCCTAGTCTATACTCCACAGCCAGCCAACTCAGTAACGGAAACTAACAATGCAAGATGTTC
AGACTCCACGGTTTAACCTATACAACCGCCAAGAAAACGACGCCTCTCGATGGTGAATTGGTGATC---TACGATTCAAT
GCAGC---------CAGCCTTGGCAAAATTCTCCCAGCAAAAGAGGAAGCGCGGCGACTTCTCCCGGTCGACACCGCACG
GGAAGAACGTTTCCGAAACAAGGAG-AAAC-TAAGCCTATCTTGACGACGACGACGATCTATCATCTCTA---TGCTGCT
GGCAAA----TTACCGCAACCGAACCGCGGACAGCGACGGATCCCAGAAAAACCATCGGGAT--------AGGTAATATC
AAAGCGCAGACGCAATGGCGATGGGGCTCCGAAAGGGGCAAAGCTTGCT---GACCGCATCGGCGGTGCATGCCAGTG--
----GGTGGGCT-----CTCCCTTTTCGCGCGCGGTTTAAAGCGGCAGCTCGCAGCCTTTTCCTCCTTCCCTCCATCCAT
TCGACGACGCCGGAGAGTGAGAGAG--TGGCCTTCTGTATACATAGCAACCTCCGT-----------------AGCAGCA
GCAGGAGCACTGTGATCTGCGAGTTCGCGGCGGCGCCGGCCATGCAGCAAGAGCTCGCCGCGCTGGCGTACCAGTCGGCC
GGTTTCGTCGGCCTCCCGACGTCCTACCTGCCGCCGCACCCGCACGACGTCGACGTGGACCTCGTCGACGGGTGGTTGGT
CGGCGGCAGCGGCGGGGCTGGCGACAATGGCCGCGGCCCGCCGTCGTGCGGCAGCGGCCTGAGCCACGTCGCCGACGCC-
--------GTGAGCGAGACGAGGAAGGCGAGGCGGCTGGCGTCGAACCGCGAGTCGGCGCGGCGGTCGCGGATGCGGCGG
CGGAGGCAGCTGGACGAGCTGTCGGCGTGCGCCGCGGAGCTGCGGGCGGCCAACCAGCGGCTCGTCGTGGAGCTCAACCG
CGCCGAGGCCAGGCACGCGCAGGTGGCCCGGGACAACGCGCGGCTCCGGGAGGAGCTGCGCCGCCTGCGGGGGAGGCTCG
CCGCCGAGGAGGAGGCCGCCGATCGAG---------ACGCCGGCGACGAGGCCGCCGCCGCAAGAACGCCGTAGGATCCG
-ACGTACGTAACACATGCGATCGCGACCGTAGTATA----CAC-CAGGACGATGATATATGCCATAACCATGAGGAGATT
AATTACCGGGCGTGTGAATATT-ATGTAGCTGG---ATTGTGTTTTCATCGATCGGGCTCTTGAAATTGCTCACTCCTGC
TTCAGTGAACCACTACTCCGTATAAGTTAACTTCGTT----GGCTGCAACATCGATCTTTCTTGAGTGACGCTCCTAC--
--------------------AGTCCCACTGTCGAATGATCGATGGTGGCCTTGGTGTTGTCCCGCTGCCGGCGACAGCGA
CGTCAAACGCCGGCCAGCCGCCGCACACCGGCAGCCAACTCGCCATAGACCATCTAGTCGCTCCATCCG-----------
-----------GTCAACAGGAAGAGTAACCAGTGTCCAAGAGAGATTCAGAAGATGTTGCGCGTCAGACACCTCCTCCGT
TCAGGACAAGATGGCGGCGGCATGTCAAAGTGCCAACCTTCAGTTGTTAGGGGCATCAGCACTA------AGCGATCAGC
GTGCGCCACTTCTATCTCCACGTGCGAAACACCAGCGATCAGACCGGCATCATGTGTGCATAAGAGTTTAG---------
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>SNPs
---------S-------------------------------S-----------------------------S--------
---------------S----------------------------------------------------------------
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-----------------------------------------------------------------S--------------
-------------------------------------------------------------------------------S
-------------------------------------S------------------------------------------
--------------------------S-----------------------------S-----------------------
----S---------------------------------------------------------------------------
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-------------------------------------------------------------S------------------
------------------------------S-----------------------S-------------------------
------------------------------------------------------------------------------S-
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------------SSSSS-----------------------------SSSS---S-------S----------S-------
-------------------------SS------S----S----------------S------------------------
------------------------S------------------------------S-----S------------------
-----------------S-----------------------------------S--S-----------------------
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-S-----------------------------------------------------------------------------S
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---------------------------------S---SSS-------------------------S--------------
--S--S-------------------------S-----------------S------------------------------
---S----SSSS---S--------S-----S------SSSS---S----------------------------SS----S
SSSSSSSSSSSSSSSSSSSS-----------S----------S-S-------------S--SS-----------------
---S--------S-------------SSS---------------------------------S------SSSSSSSSSSS
SSSSSSSSSSS-------------S-----S-------S-----------------------------------------
S----------S--------------------------------------------------------------------
--------SS------------S---------------------SS----S------S-------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1546
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-------GGCCGGAGAGTGAGAGAGA------------------------------------------------------
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>reverse_3071
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------------------------------GAGTAGTCGCTGCCATCCTC------------------------------
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