>input_sequence_78095
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCTAC
CCCGGGCGCCGCCGCCGTCGCGAGAACCGCAAACCGCACCCTCCGCTCCCTCGTCCCCTCCCAGGTACCGAACTCACT-C
CATACTTAAACTTCACAAGGCTCTGAATTGGGGGAGACAGTTGTGAATCCTTAACGTGTGCGCTGTGCGCGCGTGCAGGG
GATGAGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTTTGAGGACGCGAAGGTGTACTGCAACGGTGAGCTGG
TGCTGGTGACGGGGGGCACGAAGCCGGAGTACTCGGTGGACGTTTGGTCGGGCAACCACCCCTACTACGTCGGCGACTCC
TCGGCGCTGGTCGTCATGGACAGCCAGATCGAGAAGTTCCGCAAGAAGTGGGGGCACGTCAAGGAGTACTGGACCAAGGA
GCAGTGGCTGGAGATGCACCCTGACGGCGACCCGGAGTTTGAGCCTGAGGACGACGAGACCCGCAAATGA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr3B_1_TraesCS3B01G257700
TTTGCATTTCTATATTCTATTTCTATCCTTGTCAAGTGGGACTCACACATAGGTATGGAGTGTGGGCTGAAATTTTTAAT
GGAGAGTTAACGAAAATATACTTAAGTGCACCCAAAATACAAGTTGTCGGGCCTGTTTATACCATTTTTAAAGTTTATGT
ATGAATCAGTATATTGAGTGCAAGTTCATGTTTTTGTTAAATGGTGACCGCAAGTTCATGTACCAAAAATGTATTTAACT
CTTTCCTTAAACATGCTTCGAATTACCCGGGCCGTTTAAATTGGCACAACCCTACAATTCTATCAGCCCAATCGAACTAA
CCGACATTGCCTAAAAAAAAAAATACTAAACAACAAACGGCATTTACTATTAGGCGCTTTAGGCATCCTTTGCAAATGGG
CGGACACTCTCCTCCGCGCTGGGTCAGCCTATTTATCCTTTTCCTTTTTCCTTTTTAAGGCCAAGAAAAATTGCGCGCTT
CTTATGTTTCAAACCGGCAACCTCCTGATCCTTTGTTAGCTGCACTAACCACCCCACCATCCGCACCTGATATGCTCAAT
TACACCATCTTCTTTCTTTTCTTCTTTTTT-CTTTGAACGGTTCTGCTCAGCTTTTTATTATTTTTCCTTTTTATGAATT
TTTTTAAATCCACAAAAA-TTTCAAATCCAATGAATTTTTTAAATCAATGAAC--TTTTTAAAATTCAAATTCATGATTT
TGTTTTCGTTTTTTTTCAAATACGATCGAGCAAACCAGGCGAA-CAGGGCGAATTCAGAATCTACACGGGCCGGCCCACC
AGCGTTGGCATGTGGGCGGCAGGGAGCCCTGGCGCCTGAAGCGCCCAATAGGAGCTCCCACACACACACACACACAAAAA
AAAAGGACCAGGCCGAGCCAGAGGCCACCGGTCCCGGACCAGCAGCCTCAACATTCAGAAATCATCATCACCACAAGAGG
ATAAGATAGGAAGAAACCGGCAAGGAAGCCAACAAGTCGTCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCTAC
CCCGGGCGCCGCCGCCGTCGCGAGAACCGCAAACCGCACCCTCCGCTCCCTCGTCCCCTCCCAGGTACCGAACTCACT-C
CATACTTAAACTTCACAAGGCTCTGAATTGGGGGAGACAGTTGTGAATCCTTAACGTGTGCGCTGTGCGCGCGTGCAGGG
GATGAGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTTTGAGGACGCGAAGGTGTACTGCAACGGTGAGCTGG
TGCTGGTGACGGGGGGCACGAAGCCGGAGTACTCGGTGGACGTTTGGTCGGGCAACCACCCCTACTACGTCGGCGACTCC
TCGGCGCTGGTCGTCATGGACAGCCAGATCGAGAAGTTCCGCAAGAAGTGGGGGCACGTCAAGGAGTACTGGACCAAGGA
GCAGTGGCTGGAGATGCACCCTGACGGCGACCCGGAGTTTGAGCCTGAGGACGACGAGACCCGCAAATGATGG----CTG
CCTCTCCTACTCCTCGTCTTCCTGCTGCGTTTCTCTTGCTGTTCACTCCCGAACTCAATTATGCTAGTTTGCGTGGCTTG
ATTCTCCCGCTGTACCGTCTTCACGTTGATTGATTTGGTTCACGGGGATTGCATTTGCATTGCCCTCGAGGTGTTCGGGT
AATGTTCGCAACGACTCTAGTAATACTCCTACTACTTTCCAGTATGTGTCAACCCTCTCTACTACTGCCTCCGTTCCTAA
ATATTTGTCTTTTTAGAGATTTCAAATAAATATTCGTCTTTTTAGAGATTTCAAATGGACTATCACATATGGATGTATAT
AGACATATTTTAGAGTGTAGGTTTACTCATTTTGCTTCGTATGTAGTCACTTTTTGAAACCTCTAGAAAGACAAATATTT
AGGAACGGAGGGAGTATTATCAATGAATGCCAGCTAAGCTGTACTCCCTCCGTAAACTAATATAAAAGCAATTTAGATCA
CTATTTTAGTAATCTAAACGTTTTTATAATAATTTACAGAGGGAGTATCTTTCAAAAAAATACCCTTCATTCCTAAATAT
AAGTCTTTTTAGAGATTTCAATAAAAGATCACATACGGAGAGAGCATGTGTCAACGTTGAGCTTCACAAATCAGTGCTTT
CAAAAGTTCTTGACACGTTGAGCTTCACAAGTCAGTGCTTTCAAAAGTTCTTTTTTAGAACCAACATTTCCTGACCACCA
CAAGCGTCTTCTCTTCGTGAAAATTTGCTTGCAGCCAGAATACACGAATATGTTCATTGTAAAAAAAAGTTACTTTTTTT
CCCATTCAATTTTATAGTTCACGCTGTAGCATATGAGCATGAGTTTTCTTTTGAATTTTCATTTTGAAATATGTGCCCAT
GAGTGGTTGAGCATATTATCACTGGAGGCGAGGTTACCCATCTCCTATATGCAAATGGCACCGTGATCATGGTTGACGGG
TCGAAACTTGATATCATCAACCTCAAGTTGCTTG
>chr3A_137
--------------------------------------------------------------------------------
--------------------------------------------------------TTATATTATTTTT-AAGTTTATGT
ATGAATCGGTACATTGAGTGCAAGTTCATG-TTTTTTTAAATGGTAACTGCAAGTTCATGTACCAAAAATGTATTTAACT
CTTTCCTTAAACATGCTTCGAATTACCTGGTCCGTTTAAATTGACAAAGCCCTACCAATCCATCAGCCCAATCAAAGTAA
GCAACATTGCCTAAAAAAACAG--ACTAAACAACAAACGACATTTACTATTCGGCGCTTTA-------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
TACACCGACTTCTTTATTTTCTTCTTTTTTTCTTGGAACGGTTCTGTTTAGCATTTTATTA-TTTTCCTTTTTATGAACT
TTTTTAAATTCATAAAACTTTTCAAATATGATGATTTTTTCAAATCAATGAAC--CTTTTTTT-TTCAAATTCATGATT-
--TTTTCGTTTTTTTTCAAATACGATCGAACGAACCAG---------AGCGAATTCAGGATCTACACGGGCCAGCCCACG
AGTGTTGGCATGGTGGCGGCAGG-----------------GCGCCGAATAGGAGTTCCCACAGCAAACCCCCC-----AA
AAAAAGACCAGGCCGAGCCAGCGGCCACCGGAAATCCCGGACTAGCCTCAACATTCAGAAATCATCATCAGCACAAGAGG
ATAAGATAGGAAGAAACAGGCAAGGAAGCCAACAAGTCGTCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGAC
CCCAGGCGCCGCCGCCGTCGCGAGAACCGCAAACCGCACCCTCCGCTCCCTCGTCCCCTCCCAGGTACTGAACTCACTTC
CATACTTAAACTTCATAAGGCTCTGAATTGGGGGAGACATTTGTCAATCCTTAACTTGTGCGCTGTGCGCGCGTGCAGGG
GATGAGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTTCGAGGACGCCAAGGTGTACTGCAACGGTGAGCTGG
TGCTGGTGACGGGGGGCACGAAGCCGGAGTACTCGGTGGACGTCTGGTCGGGGAACCACCCCTACTACGTCGGCGACTCC
TCGGCGCTGGTCGTCATGGACAGCCAGATCGAGAAGTTCCGCAAGAAGTGGGGGCACGTCAAGGAGTACTGGACCAAGGA
GCAGTGGCTGGAGATGCACCCTGACGGCGACCCGGAGTTTGAGCCGGAGGACGACGAGACCCGCAAATGATGTGGCTCTG
CCTCTCCTGCTCCTCGTCTTCCTGCTGCGTTTCTCTCGTTGTTAACTCCCGAACTCAATTATGCTAGTTTGCGTGGCTTG
ATTCCCCAGCTGTACTGTCTGCACGTTGATTGATTTGGTTCACGGGGATTGCATTTGCATTGCCCTCGAGGTGTTCGGGT
AATGTTCGCAACGACTCTAGCAA------TACTACCTTCCAGTATGTGTCAAC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr3D_210
GCAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GTTCATGTACGAAAAATGTATTTAACT
CTTTGCTTAAACATGCTTCGAATTACCTGGTCCGTCAAAATTGACAAAGCCCT----ATCCATCAGCCCAATGAAAGTAA
ACAACATTGCCTAAAGACACAG--ACTAAACAACAAACGACATTTACTATTCGGCGCTTTAGGCATCCTTTGCAAACAGG
CG--CACACTCCTCCGCGCTAGGTCAGCCCATTTTCCCTTCCCC-----CCCTTTTAAGGCCAA-AAAAACTGCGCTCTT
CGTATGTCTCAAACCGGCAACCTCATGATCCTTTGTTAGCTGCACTAACCACCCCACCATCCTCACCTGATAAGCTCAAT
TACACCGTCTTCTTTCCTTTCTTATTTTTT-CTTGGAACAGTTCTGCTCAT----------------CTTTTTATGAAAT
TTTTTAAATCCACAAT--TTTTTAAATATGATGATTTATTTAAAAACAATGAATTTTTTTCAAATTCAAATTCATGATT-
-GTTTTCGTTTTTTTCTAAATACGATCGAGCAAACCAGGCGAACCAGAGCGAGTTCAGAATCTACATGGGCCGGCCTACC
AGCGTTGGCATGTGGGCGGCAGGGAGCCCTGGCGCCTGAAGCGCCGAATAAGAGCTCCCACAGCAAACCCCCC-----AA
AAAA--ACCAGGCCGAGCCAGCGGCCACCGGAAATCCCGGACTGGCCTCAACATTCAGAAATCATCAGCAGCACAAGAGG
ATAAGATAGGAAGAAACAGGCAAGGAAGGCAACAAGTCGTCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGAC
CCCGGGCGCCGCCGCCGTCGCGAGAACCGCAAACCGCACCCTCCGCTCCGTCGTCCCCTCCCAGGTACCGAACTCACT-C
CATACTTAAACTTCATAAGGCTCTGAACTGGAGGAGACAGTTGCGAATCCTTAACGTGTGCGCTGTGCGCGTGTGCAGAG
GATGAGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTTTGAGGACGCGAAGGTGTACTGCAATGGTGAGCTGG
TGCTGGTGACGGGGGGCACGAAGCCGGAGTACTCGGTGGACGTCTGGTCGGGGAACCACCCCTACTACGTCGGCGACTCC
TCGGCGCTGGTCGTCATGGACAGCCAGATCGAGAAGTTCCGCAAGAAGTGGGGGCACGTCAAGGAGTACTGGACCAAGGA
GCAGTGGCTGGAGATGCACCCTGACGGCGACCCGGAGTTTGAGCCGGAGGACGACGAGACCCGCAAATGATG--GCTCTG
CCTCTCCTGCTCCTCGTCTTCCTGCTGCGTTTCTCTTGCTGTTAACTCCCGAACTCAATTATGCTAGTTTGCGTGGCTTG
ATTCTCCAGCTGTACCGTCTGCACGTTGATTGATTTGGTTCACGGGGATTGCATTTGCATTGCCCTCGAGGTGTTCGGGT
AATGTTCGCAACGACTCTAGCAA------TACTACTTTCCAGTATGTGTCAAC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SS------S----------
-------S---S------------------S----S---------S--S-------------------------------
---------------------------S--S------------S--S-S------S-S--S------------S--S---
S-S----------------S-SSS---------------S-----------S------------------------SS--
--SS---S------------S--------S----SS----SS--SSSSS--S------------S-----S-----S---
-S-----S----------------S-------------------------------------S---------S-------
------S---------------------------S-----------------S--------S----------------S-
-----------------S---------SSS----S-------------------------S------------------S
S----------------------------------------------S--------------------------------
---------------------------------------------S----------------SSS-SS-S-S-SSSSS--
----S----------------S---------SSSSSSSSS-SS---------------------------S---------
-----------------S-----------------------------------------------------------S--
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S--------S---------------------------
--------------------------------------------------------------------------------
---------------------------------------------S--------------------------S-------
--------S----------------------------------S------------------------------------
-------S------------S-----------------------------------------------------------
--------------------S--SSSSSS------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_505
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GTTTCAAACCGGCAACCTCC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_2235
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CCACCA
CAAGCGTCTTCTCT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
