>input_sequence_78073
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-----------------------------------ATGGCGGATCGGCACGGCGAGGGCGGCGTGGCCTCGGCGCGGCGG
CCGGGGCGCGCGGACCTGGACGACCAGTCGACGACGCTGCTGCAGCGCGTGCAGGCGCACCTCCCGAACGCGACGCAGGT
GGTGGGCCTGCTGACCCTGCTCGTCGCCGGCGCGGCGCTGCTGGTGCTGGCGGGGCTGACGTTCACGGGCGCGGTGGTGG
CGCTCGTCTTCCTCGGCCCGCTGGCGCTGCTGACCAGCCCCATCTGGGTGCCCTTCTCCTTCGCGCTCCTGGTCGTGGCC
GTGGCGGCGCTCTCCTTCGTGGGCTTCGCCGTGGCCGCGCTCGCCGCGGCCACCTGGGCGTACCGGTACTTCACGGGGCG
GCACCCCGTGGGCGCCGACCGCGTGGACCGCGCCCGCAGCCGCCTCGCCGACACCGCCAGCCACGTCAAGGACTACGCCC
GCCGCGAGTACGGCGGCTACCTCGGCAACCGCACCAAGGACGCCGCCCCCGGCGCCTAG---------------------
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>chr1B_1_TraesCS1B01G445100
GACGCCTAGTGGGGGACAAGCGCTCCAGTCCACCACTCTTTTTACCGCATAGCGCTTCTTTTTCTCACATACACGCACAC
ATGCAACACACACTGCACCGCTGGCCCACTCAGATGTCTGGCCCATGTGTCATCCACTAAATCGCAAAAACACAAAGTAA
GCTAGAACTGACGGCTGAATCTTTGACAGCCAGTCAAAAAGTACTGAAAACTTTACACCGATGCATATTGGATGAATCAG
ATCGATCGTAAAGTTCAATTGCCTCATATGGGCGGGTAGCATAGCGGTGTTTATATGTTCGATTCCTGAGCTTTCCCGAA
AGGACTAATCTGTGATTTTGACCCGTCATCCGGTGCATCTTGGACGACTAGCACTGCCGT-------GCACTGGCGCTTC
ACGGCAACAACCACGAACTCGCC-AAGTTCTGCCGCGCAACACATCGTCGGTACGTGCGTGTGCCGCGGGGAGTGCCGCG
GTGGATCTCCACGACTCTC----------------------------GTCTCCGGCTGGCCGGACCGGCGTCACCCGAGC
GAACG---------------------------------------------------------------------------
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------------------------------------------------------------------------------CC
CAAAAGGATACCGCCCCCGCGAACAGTGCCGCCGGAGCAACGACAAGGCACGTACGCAGGCATGCCTGGCCACAAGTCGG
CCGTGGCCTGCTTGGCATCGCCGTGTCAGTGTCACACTCAGCCAGCAGCGCCTCGAACCGTCGCCCCCGCCGGACACGTG
CCGCACCAGATGCCCGCTGAGACTGAACGGCATCACGCCAGCAGCATATCCTGCCG-----CCGGTAAAAACTAG-----
-------ACCCGATCCGCAGAGCACGGTGAATGTAGACA-------------------------CCCCGGCCGTCGCCGC
ACACACGTCGCGCATGCACGGTCGGCGCCCCGGCCACGTGCCCGCGCGCCCGCGTCCCTCTCCGCCCCTTTAACTCCTTC
CCCCCGCCATGCCGTTTCCTTCTCCCC----CAGCTTGGCCCAGCTGCCACCCCCACTCTTCCTCCTCCTCCTAGGCTAG
CTCCCTCCGGCTCCGGCAGACTCTCCCTCCCTTCCATGGCGGATCGGCACGGCGAGGGCGGCGTGGCCTCGGCGCGGCGG
CCGGGGCGCGCGGACCTGGACGACCAGTCGACGACGCTGCTGCAGCGCGTGCAGGCGCACCTCCCGAACGCGACGCAGGT
GGTGGGCCTGCTGACCCTGCTCGTCGCCGGCGCGGCGCTGCTGGTGCTGGCGGGGCTGACGTTCACGGGCGCGGTGGTGG
CGCTCGTCTTCCTCGGCCCGCTGGCGCTGCTGACCAGCCCCATCTGGGTGCCCTTCTCCTTCGCGCTCCTGGTCGTGGCC
GTGGCGGCGCTCTCCTTCGTGGGCTTCGCCGTGGCCGCGCTCGCCGCGGCCACCTGGGCGTACCGGTACTTCACGGGGCG
GCACCCCGTGGGCGCCGACCGCGTGGACCGCGCCCGCAGCCGCCTCGCCGACACCGCCAGCCACGTCAAGGACTACGCCC
GCCGCGAGTACGGCGGCTACCTCGGCAACCGCACCAAGGACGCCGCCCCCGGCGCCTAGGCGCGCGTGACCCGGCCGTCG
CCGCCGCGCGTGCACGTCGCGGCTAGATCGTTA---CGATATGTTCGT-------------TCTGTACTCTCCCAGCTGT
TGGTGATCTCGTCGTCTTCACGTGTATGAACTACTATTAGTTTCGTTTGTTTGTTCTTAATTTCTTGTCTCGTCTTGTAC
CGTTTAGTCGGATCGGTCGACGATCATAAGGCGTACGTCCGGCGATCACGTTGATTAATTCCGGCGATGAATTGGTGCTG
GAGGTC-----------GATCGTGTTGGACCGACGGCCATGTTAGCCACGCACTAGGTATCGA-----------------
------------------TTACAGTCGGATGCAGTC-------------------ATGCAGTGTTCGTCAGTTACACTCG
GGTACAGAGTTCTTCAGAGGAAACTGCAGGGGATTCAGAGCATTGGGGGACGGAGGAGGAGAGAGGAACAGGGTAGGTCC
-GCAACACAAATGT---CGATCAATGCCTCACTTTCAGCTCATAAATATCGTATGTATACAAGATTTTTCATGTGGTA--
CATCCGACGTCATAAATATAGTGTGCGGACATTTTCCATGTATATACATCGGGACGACATTAATAAATATAGTGTGCGGA
CATTTTTCATGTATATACATCGGGACGACATTTTCAGACAGTAGGAGCAAATCCAAAGCGCCCGCCCGGCGTCCGACATG
TATAGTTTCAACCAAATAAATCCAAGCCAGATGAAAGTTTTGTAAGCCGAATAAAAAAGATATATCTATTGGTTACCAAC
ATGAGCTTATATATGCTCAACTAAATTATTTTACTTAAAAAATTGGATAATCATGCATGTCATGATAAAATTGGATAAGC
TGTTCAAACGTTGCCTCTCCTCCATACTCAGGCACAACATTCTCACCTTGAAACTGAAACCCTTAATCGTACAGACATTT
TGGACGCTCATTTTCTACGATCATATTGTGCTCATTTTCTATGATCATATTGTGCATGATCATACAAGCAGTTATCACCT
TTCATAGCTTTTGCATGCTCAAAGTA
>chr1A_356
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-----------------------------------CATCTTCGACGACTAGCACTGCCGCCTGCCGCGCATTTCTGCTTC
ACGGCAGCAACCACGAACTCGCCAAAGTTGTGCCGCGCAACACATCGTCGGTACGTGCGTGTA------------CCGCG
GTGGATCTCCACGACTCTCCC-------------------CGCCAACGTCTCCGGCTGGCCGGACCTGCGTCACCCGAGC
GAGCGCTCAAAAAGAAGTGAAATCTATTTTAAACCTTGAATTCATACGGTTAGTCGGGATTAAACCCTAACCTTTCAATC
CCTGAAATTTGTACTCTGTACTTATAGATCCCGGTCTATTTTAACCCTGAATCCGGTTATGCCAGTTTGGTGTGCTGGGA
AAATATTGATCCCGGCTAGGATTATTCTCTTCTCTCACTGAGTACATGGGTCCACTTGTCATATTCATCTTCTGCTCATT
CTCTTCATCTCTTTCTGTAGGAATCACAATGCTCAGGCACAACCAGCCGGTGTCCACGACAACAGGGAGCAGGGAGTGGT
GCATGTCCTCGTGAGTGTGCAACGGCAAGGGAGCGCCTCCTGCCAGCCTCCCTCGACATGGCCGCACCACCTTGCCTCGC
CATGCGCCAGGCCATGGACAAGAGAATTCGGGGGTGTTCCACCGTCAGCCCCTCCTTTCTGTTGGAGTTAAAGATGGCAT
AACCCGGCGTTGATGCGTGTCTTGGGTCCGTTGACTAACTAGGTCAAGTAGCAACCTAGTGCACGTCCCAGTGGATTGAC
AAAAGGAGATCGTGCTACTAGGAATCAAGGATCAAGGCAGTCGGAGTTAGTGCTAGCTTTGTACTACGTTGTCGCCGGCC
AGGAGAAGCTCGTCGTTGTCGTCACACCGTCGTCGTGGCTATGCAGCTTGTGTGGCACCATGTAAGCACACAGGACGTTA
GTGTTGCTATCATTCATCCACCTGCGCCGGCCAGTCATGGTGCTTGCTGCTTGGCGAGGTGAAGCTCTAGCTCTTCATCG
CCATCTTCTCCTCCGCGAGGAGGATGAGGAGCCAGCAAGTGCGGCACTCGGCCAAACCCAACACGACTCGCTCGCCGTGC
CCCGCCGTCTCTCCGCCATAAGCAGCACGCGGGCTGGCTTGGAGGGGAGGAGCAGCACGCACCAATGGCAGGGCGGAGGC
CGTTTAGGAACACGAAAACTGCAACGGTTGTTCTACGGGACGGCAGCAGGCGTGGGCGCGACCATCGACGGGCTGCTGCA
GGCGTTCGCGTACAGCAAGTTGTCCGGCTCCAGTGCATAGGGGCGGCAGTTCAACTGCTTCGTCTGCCTCAACAAGTTCG
CCGCTAACCAACGCCTCCGCCGTTCTGCGGCCGCCCGTTCCACCATTTTAGGAGAGAGAGGAGAGGAATTGTGGATAAGG
TGGAGATTGAAGAACGGAAATGACATGTGGGCCAGTGTTGTAAATGAGAGTACAAATTAAATCCGGTCGGGATCACTCCC
CAAAAGGATACCGCCCCTGCGAACAGTGCCGCCGGCGCAACGACAAAGCATGTACGCATGCCTGCCCGGCCACCCGTCGG
CCGTGGCCTGCCTGGCATCGCCGTGTCAGTGTCACACTCAGCCAGC---GCCCCGAACCGTCGCCCCCGCCGCACACGTG
CCGCACCAGATGCCC------ACTCAACGGCATCACGCCAGCAGCATATCCTGCCGTGCCGCCGGTAAAAACTAG-----
-------ACCCGATCCGCAGAGCACGGTGAATGTAGACA-------------------------CCCCGGCCGTCGCCGC
ACACACGTCGCGCATGCACGGTCGGCGCCCCGGCCACGTGCCCGCGCGCCCGCGTCCCTCTCCGCCCCTTTAACTCCTTG
CCCC-GCCATGCCGTCTCCTTCTCCCC----CCGCTCGGCCTAGCTGCCACCACTCTTCCTCCTCCTCCTCCTCCTAGTC
CCGGTCACAGCCT----------------CCTTCCATGGCGGATCGGCACGGCGAGGGCGGCGTGGCCTCGGCGCGGCGG
CCGGGGCGCACGGACCTGGACGACCTGTCGACGACGCTGCTGCAGCGCGTGCAGGCGCACCTCCCGAACGCGACGCAGGT
GGTGGGCCTGCTGACCCTGCTGCTCGCCGGCGCGGCGCTGCTGGTGCTGGCGGGGCTGACGTTCACGGGCGCCGTGGTGG
CGCTCGTCTTCCTCGGCCCGCTGGCGCTGCTGACCAGCCCCATCTGGGTGCCGTTCTCCTTCGCGCTCCTCGTGGTCGTC
GTGGCGGCGCTCTCCTTCGTCGGGTTCGCCGTGGCCGCGCTCGCCGCGGCCACCTGGGCGTACCGGTACTTCACGGGGCG
GCACCCCGTGGGCGCCGACCGCGTGGACCGCGCCCGCAGCCGCCTCGCCGACACCGCCAGCCACGTCAAGGACTACGCCC
GCCGCGAGTACGACGGCTACCTCGGCAACCGGACCAAGGACGCCGCCCCCGGCGCCTAGTCGCCGCGCGTG---------
----CGTGCGTGCACGTCGTGGCTAGATCGTTATTACGATATGCTCTTCTCTCTTTGCGTCTCTGTACTCTCCCAGGTGT
TGGTGATCACGTCGTCTTCACGTGTATGATCTACTATTAGTTTCGTTTGTTCGTTCTT----TCTTGCCTCGCCTTGTAC
TGTTTAGTCAGATCGATCGACGATCATAAGGCACACGTCCAACGATCATGTTGATTAATTCCGGCGATGAACTGGTCGTG
CACTGGCGCTGTAGGTAGATCGTGTTGGACCGACGGCCATCTTGGCCACGCACTAGCATAGACTGCATAGTGGTGCAAGA
AATGTATCGGTTACACACTTATACTCGGATGCAGAGTTCTTCAGATTACACTTGGATGCAGAGTTCTTCAGTTACACTCG
GATGCAGAGTTCTGCAGAGGAAACTGCAGGGGATTCAGAGCCTT-GGGGACGAAGGAGGAGAGAGGAACAGGGTAGGTCT
GGCAACACAATGTCGACCGATCGATGCCTCACGTTCAGCTCATAAATATCGTATAC-----AGATTTTTCATGTGGTATA
CATCCGTCGTCATAAATGTAGTGTG---------------------------GACCCCCTAAAAAAATGTAGTGT--GGA
CATTTTTCATGTATATACATCGGGACGACATTTT----------------------------------------------
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>chr1D_371
GCAG----------------------------------------------------------------------------
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------------------------------------------------------TGCCGT-------GCATTTGTGCTAC
ACGGCAGCAACCACGAACTCGCCAAAGCTCTGCCGCGCAACACATCGTCGGTACGTGCGCGTA------------CCTCA
GTGGATCTCCACGACTCTCCACCGAGGCCACGCCGCTCGTCGCCCACGTCTCCGGCCGGCGTCACCAGCAGGAT------
----G---------------------------------------------------------------------------
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------------------------------------------------------------------------------CC
CAAAAGGAGATCGCCGCTGTGAACAGTGCCGCCGGCGCAACGACAAAGCATGTACGCAGGCATGCCTGGCCACCCGTCGG
CCGTGGCCTGCTTGGCATCGCCGTGTCAGTGTCACACTCAGCCAGCAGCGCCTCGAACCGTCGCCCCCGCCGCACACGTG
CCGCACCAGATGCCC------ACTCAACGGCATCACGCCAGCAGCATATCCTGCCGTGCCGCCGGTAAAAACTACAGTAA
AAATGGAACCCGATCCGCGGAGCACGGTGGAATATAGACAAGGGGGCAGAGCCGAGCAGAGCAGCCCCGTCCGTCGTCGC
ACACACGTCGCGCATGCACGGTCGGCGCCCCGGCCACGTGCCCGCGCGCCCGCGTCCCTCTCCTCCCCTTTAACTCCTTG
CCCC-GCCATGCCGTCTCCTTCTCCCCAGCCCAGCTTGGCCTAGCTGCCACCACCCCTCTTCCTCCTCCTCCTAGGCTAG
CTCCCTCCGGCAGACT----------CTCCCTTCCATGGCGGATCGGCACGGCGAGGGCGGCGTGGCCTCGGCGCGGCGG
CCGGGGCGCACGGACCTGGACGACCCGTCGACGACGCTGCTGCAGCGCGTGCAGGCGCACCTCCCGAACGCGACGCAGGT
GGTGGGCCTGCTGACCCTGCTGCTCGCCGGCGCGGCGCTGCTGGTGCTGGCGGGGCTGACGTTCACGGGCGCGGTGGTGG
CGCTCGTCTTCCTCGGCCCGCTGGCGCTGCTGACCAGCCCCATCTGGGTGCCGTTCTCCTTCGCGCTCCTGGTCGTGGCC
GTGGCGGCGCTCTCCTTCGTCGGGTTCGCCGTGGCCGCCCTCGCCGCGGCCACCTGGGCGTACCGGTACTTCACGGGGCG
GCACCCCGTGGGCGCCGACCGCGTGGATCGCGCCCGCAGCCGCCTCGCCGACACCGCCAGCCACGTCAAGGACTACGCCC
GCCGCGAGTACGGCGGATACCTCGGCAACCGCACCAAGGACGCCGCCCCGGGCGCCTAG---------------------
-----------GCACGTCGCGGCTAGATCGTTATTACGATATGTTCTTCTCTCTTTGCGTCTCTGTACTCTCCCAGCTGT
TGGTAATCTCGTCGTCTTCACGTGTATGAACTACTATTAGTTTCGTTTGTTTGTTAGT----TCTTGTCTCGTCTTGTAC
TGTTTAGTCAGATCGATCGACGATCATAAGGCGTACCTCCGGCGATCATGTTGATTAATTCCGGCGATGAACTGGTCATG
CACTGGCGCTGTAGGTAGATCGCGTTGGACCGACGGCCATCTTGGCCACGCACTAGCAGAGACTGCATAGTGGAGCAAAA
AATGTATCGGTTACACACTTGTACTCGGATGCAGAGTTC---------------------------TTCAGTTACACTCG
GATGCAGAGTTCTTCAGAGGAAACTGCAGGGGATTCAGAGCCTT-GGGGACGAAGGAGGAGAGAGGAACAGGGTAGGTCT
GGCAACACAATGTCGACCGATCGATGCCTCACTTTCAGCTCATAAATATCGTATAC-----AGATTTTTCATGTGGTA--
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>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S----------------------------S-S-S-----
------S-------------------------------------------------------SSSSSSSSSSSSS-----
------------------------------------------------------------------S-------------
--S-----------------------------------------------------------------------------
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-----------------S-----------------S----------S---S----------------------SS-----
------------------------------------------------------------------------S-------
---------------SSSSSS---S-------------------------------------------------------
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-------------------------------------------------------------------------------S
----S----------S-------------------------S----------S--S------------------------
-----------SSSSSSSSSSSSSSS------------------------------------------------------
---------S---------------S------------------------------------------------------
---------------------SS---------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------S--S--------------------------------------------------------
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-----------------------------------------------------------S---SSSSSSSSSSSSSSSSS
SSSS--S---------------------------------------S---------------------------------
----------------------------------------------------------SSSS------------------
S--------S-----S--------------------------------S----------------------S----SS--
S-SSSS----------------------------------S--S------------SSSSSSS-----------------
---------------------S-S----------SS-------------------------S----S-------------
-S-S-------------------------------------S--S-------S--------------------------S
----------SSSS--------S-------------------------------SSSSSSS-------------------
------S----------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSS---SS-S-S--S----S------SS---
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_130
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------------------------------CAGATGTCTGGCCCATGTGT------------------------------
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>reverse_3041
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CGTTTAGTCGGATCGGTCGA------------------------------------------------------------
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