>input_sequence_78059
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--------------------------------------ATGTCGGTGAGTTGATCAAGATCCTGTGTGAATTTACGCCTA
TGGATTCATCGATCTCTGGTTCATCTTGTTTGCACTGCCTTGATTGATCATAT---ATGGATCTTCTTTTAATGTCGTCG
CAAACAAATAACGTGATGATG---CA-TTGAAACAAGAAAATGGTTCAGACGGAGGCTGGCCGCACAATCCCCAAGTTCG
GCGCCTGGGACGTGAACAACCCGGCCTCCGCCGACGGGTTCACGGTCATCTTCAGCAAGGCCAGGGATGACAAGAAGGCC
CCCGTCAACGTGCACAAGGCCAGCAAGTCCGCCGACGGCAAGGACGCCAGGCCCGACTCGAAGATGAACCAATCCTACAG
CAACTCCAGGCCCAACACCTCGGTACTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCTCTCTCAAGAG---
----------ATCCATTCATTCCCATCTGATATTGCAGAAGAAATGGTTCTGCTGCGTGTCGCCGAGCCCCACGCAGCCT
TGA-----------------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G267800
CCTTCTTCCTCTTTATTGCCACCGGCGTTCTCCCTTTTCATCGACATATCCGCGCGTCA-----ACGACCCGCTGGTCGG
CATCAGCTAAACCGCTCGCTCCCACCACCCATTGCCAGTGTCAATGCTGCACCACCTCGGTGTCTCTCCCTACCCTTGCC
GCCCTGGTCTTCC------------------------------------------CCTTCAAGTTTCGTCCTTGCCTTCA
CTTGTGTCGGGCGTTGTCAGCGGTTCGGGTTCAGTGTTTCGCCCTCCGTCCACCATCAACTACGCCTCACAACAATCGCT
CCACTGTCGCGTCGTCACCGACTCAGGCTCAGTGCTTCCTCATCCGTCCGCCACCTCCTACGCCTCGCCGCCGTTACTCC
ATCTTCTTGGCCCGAGCCTAGGAAAAGGCACGGTGTGCACGAAAGGTGCGTGTTTGCTCGCTATTCCACGCACTACTCCG
AGGATGCC-AAAAAAAAGGCATGTGATCCATCGACTCCACCACCTAGCTTCAAACAGGACGCAGCTACCAGGTGGGTCCG
GCGGAAGCAGTGACGGAGACAGGGAGTGCCAGC-----AAGCCCCCTCAAGGACTGCTCCTAATTTTACT------TATG
AGCAGGGGGAAAATAGTC-ACTATTTGTTGCTAAAAATC--TTTTTCCTATAGTTTGGCCCTCCCAGCCTCTTTTGACAG
CACTTGGCCCCTCTAATCCAGTTTTTCTGGCTCCCTAGGCCGTTTTGCTGCCTCCGAAACCAGAGCCGCCGTGTTAAAAA
AAGTTAGTA-GGAGTAAACTAAATCCGCTGGGAAATGTGCTTAATTTTAGGCAGGCAACGTCCCACGCAGAGCATGCATG
AGATTAGCGGGTATAAGTGGGCGGGTGCCATTGCG---------ATCTTCTCCTCCTGCTATATTTGACCGCCTTCCCTC
TCATCCCGGGGGAAATTTTGCCCCGAA------GCGCTTCATATCCATTTAAGGGGGCAAAATTTTCTCTCGCGTCTACC
GCTGAAGGGCACCGCGCCACCCCGTCAAGACATAAAACATGTCGGTGAGTTGATCAAGATCCTGTGTGAATTTACGCCTA
TGGATTCATCGATCTCTGGTTCATCTTGTTTGCACTGCCTTGATTGATCATAT---ATGGATCTTCTTTTAATGTCGTCG
CAAACAAATAACGTGATGATG---CA-TTGAAACAAGAAAATGGTTCAGACGGAGGCTGGCCGCACAATCCCCAAGTTCG
GCGCCTGGGACGTGAACAACCCGGCCTCCGCCGACGGGTTCACGGTCATCTTCAGCAAGGCCAGGGATGACAAGAAGGCC
CCCGTCAACGTGCACAAGGCCAGCAAGTCCGCCGACGGCAAGGACGCCAGGCCCGACTCGAAGATGAACCAATCCTACAG
CAACTCCAGGCCCAACACCTCGGTACTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCTCTCTCAAGAG---
----------ATCCATTCATTCCCATCTGATATTGCAGAAGAAATGGTTCTGCTGCGTGTCGCCGAGCCCCACGCAGCCT
TGAGCTAGGACGAGGATGATGATGATGAGGAGGAGGGGATCGGGCGGAGTGTCGCGCGAATGCGAATGCGATGGGACGGA
GGAGAGGGGAGTGTCAATGCCGCTGCTTCGTTTATAAACAAACGTACTACTATCGTACATACACAAACACTT-GCCACTT
CGGG-----GATGAGATGAGACGATGTTGATGTAATTATGTGATGGTCGTGCGTGGCCCTGTCGCCAGGCGTGATGTATG
GCTT-CGCATAAGAGAAAGAAACTTGCTCATACCATGCGGATACATCTGCTTTCCTTTCAGATGTTCTCAGCCTCA-GGT
GCGTGCGTAAACCGGCTCACCTCATGTTCAGGCTGCTTGCACGACCCCATCCTGCCTGCCACCGGCAGCTTCAATCCGAG
ATGCCCCGTTCGATGTGGAATCTGCCCTGCACAACCACCAGATGAT----AGGGCTAAAAGTATATGCAAAAATGATGAT
GCATCACTAGCTGTTAATCGTATGGGTGTAGA------------------------------------------------
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-------------------------------------------GAATACCACATCGTTGTCGCAGCTGTCCAATAACA-T
GCAAGTTCAGAGCCATGTAAATAGATTGTTTCAAAATGTTTACTCATAGCAAGGCTCAAACCCAA-CATTCCACATTCAT
GTCTGTCTATCGTCATCACGCCCGAATTCATTTCTAGATAGCCTGTAGGCAGAGCGACGACACAAAGCAAAGGGAAACGA
GGGTGACGAAATAAGGCAGGCCTCCGCTGTCCCTGCGGATGAAGAGGGCCTCGTAGACCGGGGCATTGATCACCACTATG
GCCACGCAGAGGACAGCCTGCAGAAACAGTGGCCCCAGCCCTTCCGCGCCTCCGCGCAACAGAACTCTGCCCAGCCCGAG
CACCAAGCACACCAGGTTGAACAGCGCGATCGTGGTGATGATCACAAACATACCCGAGATGGGCCCGAACTCCATCTTCC
CCTTCTTGTACCTCTCCAGAGCCTGCGACTCATCCACCTTCACCGTCAGCTCGAATCCGGACTCGGAG
>chr6B_1
CCTTCTTCCTTTCTTGTCAT---GGCGTTCTCCCTTTTCATCAACATATCCGCGCGTCACCTCAACGACCCGCTGGTCGG
CATCAGCTGAACCGCTGGCTCCCAC--CCCATGGCCGGTGTCGATGTTGCACCACCTCGGTGTCTCTCCCTACCCTTGTC
GCCCTGGTCTTCCCTCTAATCCCCCCTCTCTGGCGCTGGTGATCCACACCCAACCCCTTCAAGTTTCTTCATTGCCTTCA
TCTGTGTCGGGCGTTGTCAGCGGCTCGGGTTCAGTGTTTCGCCTTCCATCCAACACCACCTACA-CTCACAACGATTGCT
CCACCGCTGCGTCATCATCGGCTCAGGCTCAGTGCTTTGTCATACGTCCACCACCTCCTACATCTCGCAGCCGTTGCTCC
ATCTTCTTGGCCTGAGCCTAGGAAAAGGCACGGTGTGCACGGAAGGTGCGCGTTTGCTCGCTATTCCACGCACTACTCCG
AGGATGCC-AAA-AAAAGGCATGTGATCCAGCGACTCCACCACCTAGCCCCAAACTGGGCGCAGCTACCAGGCGGGCCCG
GTGGAAACAATGACGGAGACAGGGAGTGTGAGCAAGGAAAGCCCCCTCAAGGATTGCTGCTAATTTTACTTTTACTTATG
AACAGGGAGAAAATAGTC-ACTATTTGTTGCTAAAAATC--TTTTTCCTATAGTTTGGTCCTCCCAGCCTCTTTTGACAT
CACTTGGCCCCCCTAATTCAGTTTTTCTGGCTCC----------------------------------------------
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>chr6A_167
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-----------CC------------------------------------------CCTTCAGATTTCGTCCTTGCCTTCA
CCTGTATCGGGCGTTGTCAGCGGCTCGGGTTCAGTGTTTCGCCCTCCGTCCACCACCACCTACGCCTCACAGCCGCCA--
---------CGTCGTCACCGGCTCAGGCTCAGTGCTTCGTCATCCGTCCACCATCTCCTACGCCTCGCTGCCGTTGCCCC
AACTTCTTGGCCCGAGCCTAGGAAAAGGCACGGTGTGCACGGAAGGTGCATGTTTGCTCGCTATTTCACGCACTACCCCG
GGGATGTCAAAA-AAAAGACATGCGATCCGGTGACTCCACCACCTAGCCGCAAACAGGACACGGCTACCAGGCGGGCCCG
GCAGAAGCAGCGACGGAGATAGGGAGTGCCAGC-----AAGCCCCCTCAAGGATTGCTGCTAATA------TTACTTATG
AACAGGAAGAAAATAGTCCACTATTTGTTGCCAAAAATCTTTTTTTCCTATAGTTTGGCCCTCCCAGCCTCTTTTGACAG
CACTTGGCCCCCCTAATCCAGTTTTTCTGGCTCCCTAGGCCGTTTTGCTGCCTCCGAAACCAGAGCCGCCGTGTTAAAAA
AAAGGTAGTGGGAGTAAACAAAATCCGCTGGGAAATGTGCTTAATTTTAGCCAGGCAACGTCCCACGCAGAGCATGCATG
AGATTAGCGGGTATAAGTGGGCGGGTGCCGTTGCGATCCCCCCAATCTTCTCCTCCTGCTATATTTGACCGCCTTCCCTC
TCATCCCGGGGGAAATTTTGCCCCGAAGCACTTGCGCTTCATATCCATTCAAGGGGGCAAAATTTTCTCTCGCGTCTACC
GCTCAAGGGCACCGCGCCACCCCGTCAAGGCAT-AAACATGTCGGTGAGTTGATCAAGATCCTGCGTGAATTTACGCCTA
TGGATTCATCGATCTCTGGTTCATCTTGTTTGCACTGCCTTGGTTGATCATACTACATGGATCTTGTTTTAAT---GTCG
CAAACAAATAATGTGATGATGGTGCA-TTGAAACAAGAAAATGGCTCAGATGGAGGCTGGCCGCACAATCCCCAAGTTCG
GCGCCTGGGACGTGAACAACCCGGCCTCCGCCGACGGGTTCACGGTCATCTTCAGCAAGGCCAGGGATGACAAGAAGGCC
CCCGTCAACGTGCACAAGGCCAGCAGGTCCGCCGACGGCAAGGACGCCAGGCCCGACTCCAAGATGAACCAGTCCTACAG
CAACTCCAGGCCCAACACCTCGGTACCTT----------TTCTTCTTCCTCTTCTTCTTCCTCACCTATCTTAAGAGATT
CAAGAGATTCATTCATTCATTTCCATCTGATATTGCAGAAGAAATGGTTCTGCTGCGTGTCGCCGAGCCCCACGCAGCCC
TGAGCCAGGACACTGAGGAAGAGGAGAAG--GG---GGATCGGGCGGAGTGTCGCGCGAATGCGAATGCGATGGGATGGA
GGAGAGGGGAGTGTCAATGCCGCTGCTTCGTTCATAAACAAACGTACTACTATCGTACATACACAAACACTT-GCCACTT
CGGG-----GATGAGATGAGACGATGTTGATGTAATTATGCGACGGTCGCACGTGACCCTGTCGCCAGGCGCGATGTATG
GCTTTCGCATAAGAGAAAGAAACTTGCTCATACCATGCGGATACATCTGCTTTCCTTTCAGATGTTCTCAGCCTCA-GGT
GCGTGCGTAAACT-------------------------------CCCCATCCTGCCTGCCACCGGCAGCTTCAAGCTGAG
ATGCCCCGTTCGATGTGGAACCTGCCCTGCAGAACTACCAGATGATCGTTAGGGA-AAAACTATATGCAAAAATGATGAT
GCATTAGTAGCTGTTAATCGCATGGGTGTAGAGAATACCACAGCGTTTTTTTTTTTTTTGAATTGAGGGGCATGCCCCCG
ATTTTATTTCATTGCATGAAAGGAAACCAATAAAACAGATCAAGTATTCTTCAGATTCCATCCAGCCCTCAGATGTCCTA
CCATGACATCCAGGCATCAGCAACTAGACAACCAAGAGAATAAAGCTTGCAACTAAGAAAAAACTCCATACTTATCAGAA
ATGCATACCTAGGTGAGAGGTAACCACACAGGGCTCCTCTCCCCCACTCATCGCCACATACTCTCCAGGGAGGACAGAAA
TTCAGCTAACATTACAGACAAAATTACTCCCCGATGTCAAGACGTTTCACCATGGGCGCCCATCCTCTGCTCTTGTTGAA
GAAACCATTCGCAACATCAACCAGCAGTGTTGCGACGGCCCGCAACATCTGTTGCCCTTCTTTTCTCTGTAGACCAGCCC
AGTAAGACATCCAATAAGATATTTGAAAGAACAACACACTAGGATCATAAGGGTAAACATGATGAAATGTAGCAGCATTT
CTGGCTTTCCACAAAGTCCAAAACACCGCAGAAACACCCACTGCTATTGTTTGCCTACTATTCTTAGGATTTTTTTTTAC
CCAGGCAGTAAACTCTTCTATCTTGCATGGAATGTCATGAATTCCAGTTACATTCCTAACCACACCCCACACAAACTTAG
CCACCACACATGTACAGAAAAGATGATCAACCGTTTCTGGGTAATCACAGAAACTACAGTTTTTATCCTTTCCTTTCCAG
TTTCTTTTCGCCAAATTGTCTCTAGTTAGGACACTATTCTTAAACATCAACCACAAGAAAACTTAACTTTCAGCGGTATC
CTCGCCTGTCACAATTTCCTATGAGGCCAGGCAGCCTGATCCGTTTTTAAAGCAAGATACAAAGATCTAACCGTGAATCT
ACCAGATTTAGTTAGCAGCCAACTACATCTATCCTCTTGATCGTTTAAAACTACTTTACTGCATAGATTTTTGAGCTCAT
ACCACATATCAGCCGTGTCTCCCCATAAAACTCTTCTAAATCTAATCAAACTCATATTATCAGACAGAACTTTGGCGACA
GTGAAATCTGAATTAAAGGTTAGTAGATAGAGTCTAGGGAACTGAATACCACATCGTTGTCGCAGCTGTCCAATAACA-T
GGAAGTTCAGAGCCGTGTAAATAGATTGTTTCAAAATGTT-ACTCATAGTAAGGG----------------------CAT
GTCCGTCTATCGTTATCACG-CCGAATTCATTTCTAGATAGCCTGTAGGCAGAGCGACGACACAAAGCAAAGGGAAACTA
GGGTGACGAAATAAGGCAGGCTTCCGCTGTCCCTGCGGATGAAGAGGGCCTCGTAGACCGGAGCATTGATGACCACTATG
GCCACACAGAGGACAGCCTGCAGAAACAAAGGTCCCAACCCTGCCGTTCCTTCGCGCAACAGAGCTCTGCCCAGCCCGAC
CACCAGGCACACCAGGTTGAACAGCGCGATCGTGGTGATGATCACAAACATACCCGAGATGGGCCCGAACTCCATCTTCC
CCTTCTTGTACCTCTCCAGAGCCTGCGACTCGTCCACCTTCACCGTCAGCTCGAATCCGGACTCGGAG
>chr6B_691
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--------------------------------CCCTAGGCCGTTTTGCTGCCTCCGAAACCAGAGCCTCCGTGTTAAAAA
AAGGTAGC-----------------------------------------------CAACGTCCCACGCAGAGCATGCATG
AGATTAGCGGGTATAA--------GTGCCGTTGCG---------ATCTTCTCCTCCTGCTATATTTGACCGCCTTCCCTC
TCATCCCGGGGGAAATTTTGCCCCGAA------GCGCTTCATATCCATTCAAGGGGGCAAAATTTTCTCTCGCGTCTACC
GCTCAAGGGCACCGCGCCACCCCGTCAAGGCA--AAACATGTCGGTGAGTTGATAAAGATCCTATGTGAATTTACGTCTA
TGGATTCGTCCATCTCTGGTTCATCTTGTTTGCACTGCCTTGATTGATCATAT---ATGGATCTTCTTTTAATGTCGTCG
CAAACAAATAATGTGATGATG---CATTTGAAACAAGAAAATGGATCAGACGGAGGCTGGCCGCACAATCCCCAAGTTCG
GCGCCTGGGACGTGAACAACCCGGCCTCCGCCGACGGGTTCACGGTCATCTTCAGCAAGGCCAGGGATGATAAGAAGGCC
CCCGTCAACGTGCACAAGGCCAGCAAGTCCGCCGACGGCAAGGACGCCAGGCCCGACTCCAAGATGAACCAATCCTACAG
CAACTCCAGGCCCAACACTTCGGTAC-------------TTCTTCTTCTTCTTCTTCTTCCTCCTCTCTCTCAAGAG---
----------ATTCATTCTTTCCCATCTGATATTGCAGAAGAAATGGTTCTGCTGCGTGTCGCCGAGCCCCACGCAGCCT
TGAGCCAGGAGGAGGATGATGATGAAGAGGCGG---GGATCGGGCGGAGTGTCGCGCGAATGCGAATGCGATGGGATGGA
GGAGAGGGGAGTGTCAATGCCGCTGCTTCGTTTATAAACAAACGTACTACTATCGCACATACACAAACACTTTGCCACTT
CGGGGATGAGATGAGATGAGACGATGTTGATGTAACTATGCGACGGTCGTACGTGGCCCTGTCGCCAGGCGTGATGTATG
GCTTCCGCGTA--AGAAAGAAACTTGCTCATACCATGCGGATACATCT--------TTCAGATGTTCTCAGCCTCAAGGT
GCGTGCGTAAACTGGCTCACCTCATGTTCAGGCTGCTTGCACGACCCCATCCTGCCTGCCACCGGCAGCTTCAAGCCGAG
ATGCCCCGTTCGATGTGGAACCTGCCCTGCGCAACTACCAGATGAC----AGGGC-TAAGCTATATGCAAAAATGATGAT
GCATCACTAGCTGTTAATCGTACGGGTGTAGAGAATACCGCATCAC----------------------------------
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---------------------------------------------------------TGTCGCAGCTGTCCAATAACATT
GGAAGTTCAGAGCCGTGTAAATAGATTGTTTCAAAATGTT-ACTCATAGCAAGGCTCAAACCCAAACATTCCACATTCAT
GTCTGTCCATCGTTGTCACG-CCGAATTCATTTCTAGATAGCCTGTAGGCAGAGCGACGACACAAAGCAAAGGGAAACGA
GGGTGACGAAATAAGGCAGGCTTCCGCTGTCCCTGCGGATGAAGAGGGCCTCGTAGACCGGGGCATTGATGACCACTATG
GCCACACAGAGGACAGCCTGCAGAAACAAAGGTCCCAACCCTGCCGCGCCTTCGCGCAACACAACTCTGCCCAGCCCGAG
CACCAAGCACACCAAGTTGAACAGCGCGATCGTGGTGATGATAACAAACATACCCGAGATGGGCCCGAACTCCATCTTAC
CCTTCTTGTACCTCTCCAGAGCCTGCGACTCGTCCACCTTCACCGTCAGCTCGAATCCGGACTCGGAG
>SNPs
----------S-S-SS-SSSSSS-------------------S-------------------------------------
--------S-------S--------SS-----S---S-----S---S-------------------------------S-
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-S---------------------S-------------------------------S--S--------------S------
----S-SS------------S-----------------S----------S------------------S------S----
-----------------------------------------S--------------------------------------
------------S-----------------S-----------------SS----------------------S---S---
-----------------------------------------------------S----S---------------------
-S-----S------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
---S---SS----------S------------------------------S-----------------------------
-----------------------------S--------------------------------------------------
-------------------------------------------------S------------------------------
---S-------------------------S---S----------------------------------------------
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-----------S--------------------------------S-----------------------------------
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-----------------------------------------------------------S--------------------
--------------------------SS-SSSSSSSSSS------------------S----------------------
------------S-------------------------------------------------------------------
-----S-------------------S----S--SSS----------------------------------------S---
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----------------------------------------S--S------S-----------------------------
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------------S-------------------------------------------------------------S-----
--------------------S--------------S-------------------S----S-------------------
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-S------------S-------------------------S---------------------------------------
-------------S------S-----------------------------------------------------------
---------------------S------------------------------------------------S---------
-----S----------------------SS--S----S----S--------S----------------------------
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-------------------------------S------------------------------------
>forward_529
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-----------------------------ATCGACTCCACCACCTAGCT-------------------------------
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>reverse_1933
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------------CGGCTCACCTCATGTTCAGG------------------------------------------------
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