>input_sequence_78032
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--------------ATGGAGAAAACCGTAGCACTAGCTCTGCTGCTACTCTTCACTCTCCTGACCACGACCCATCGGTTC
GCGGATGGCCAGGCCTACTGCCGGTCGCAGATCAGCCTCGCAAACGAGGCCTGCAACCTGAGGACCTTCCCGGGGTCGAG
GCCCCCCTACGTGCCCCGGCAGCTACTCAACGAAACATCCACGTCGACGACACCCGGCAGCAAGGACTACGAGCTTCGGT
CCCGGGACGACGACGACGACGACGATGACAACGATGAAGGGGGAGAACATGAGGGGCGGCACCGGCGTCGACAGCGGCAC
CGCCACAGCGCCGACAACAGC------GACCCGCGTGACACAGCCTGCTGCCGCCGGCTGATGTCCATCGACAACTCGTG
CATCTGCCAGGCGTCGGCGCGCCTCCCGGTGTTCATGACCTCGGTGTGGCACGTCATCAAGCTCACGCCGGTGGAGGGCT
GCGAGGTCACCTACGAGTGCCCTGGCGCCTTGTCACCGCTGGGCTGA---------------------------------
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>chr7A_1_TraesCS7A01G493100
CTGTAGGTACTTTCCATATCT---ACAGAGGTTTTCTTGACCATACATCATGTGTTTTGCGTGTTCAATCTGCCGTACTG
TCAGCTACTTTTGGTGTGTCCGCCTTACAACTAGGGATTTGGCATTCAAACCGTGCTGAAAAATGAATTCTTCGATGA--
GTGTCCGGCTCCTTTGTAGTAGATCACT--TGTACTGCATCATACGAAGGAGAATCGTTTCACCTAACGGATTATCCTTC
TGTTAAAAAATGAAGTACAAAGCTGCAGCCAAAGTGGAACTGTGGGAGGCTAAGCTAATGAACAATA---ATATTTTGTT
AATAAACAGTCGCTTAACCAGTCCCGACATAGCTACACCTACTTTTGATCCAGGTTTTGTATAGTTACCCCTCTTGGCCA
ATAATTGTTGGAGGATCAACAAGATGCATACAAAGATGCAGTTGGAGGATCAACAAGATGCATACAAAGATCCTGTGATT
ATGTGAATCGATTAACTTGATTAATCTCAACCTGACTACCAGCTGTTGATCACATAACTGCCCCTCTTTGTTTCAACGAA
ACTACCCATCTTCTCGTCTGCCTAGCTAGCTAGCCAACAACCTAAGGTAAGGATTAACAAGATGCACACAAAGATCGTAG
ATCCAAGC---CTGTCATAGTTATTACTAGCATGTATGAAAATTATGATATATCGACA----------------------
-------------------AACCTCAGGTGCAAGAATACGTACTGTTAATGGGTACTAAACTCTAAACAGACACAGATTA
TCACTAGATATACCGTGCATGTCATGTTAATCAAACAGTCACAACTTCTGTCAGCATATGAGTTCTTGAGAAAGAAGGAA
AGGTAAACCTAAATTCAACATCATTGTTTAAAGATCTTCATGGTGGAACCATAAGCTACTTAAGTAGCCTGATCGCTACT
TGCTCATCCAACCTTATCCAAAACCGAATCACAGCAGCAAAAACCAAGACAGGGACGACCATACTCACCTCCAAAGTTAG
CTGTGGTCTTCGGCATGGAGAAAACCGTAGCACTAGCTCTGCTGCTACTCTTCACTCTCCTGACCACGACCCATCGGTTC
GCGGATGGCCAGGCCTACTGCCGGTCGCAGATCAGCCTCGCAAACGAGGCCTGCAACCTGAGGACCTTCCCGGGGTCGAG
GCCCCCCTACGTGCCCCGGCAGCTACTCAACGAAACATCCACGTCGACGACACCCGGCAGCAAGGACTACGAGCTTCGGT
CCCGGGACGACGACGACGACGACGATGACAACGATGAAGGGGGAGAACATGAGGGGCGGCACCGGCGTCGACAGCGGCAC
CGCCACAGCGCCGACAACAGC------GACCCGCGTGACACAGCCTGCTGCCGCCGGCTGATGTCCATCGACAACTCGTG
CATCTGCCAGGCGTCGGCGCGCCTCCCGGTGTTCATGACCTCGGTGTGGCACGTCATCAAGCTCACGCCGGTGGAGGGCT
GCGAGGTCACCTACGAGTGCCCTGGCGCCTTGTCACCGCTGGGCTGATCTCATTACATTGATCAATTGATTGCGATTATG
TCTACTACACCAAATCGTCAGTTCACATTCCTTACACAGAGATTGAATTCTACTGCTTGATCCATATTGTAATAAAGATA
GATTAACAGATGTTGTACTATCATTGAGAAGAAGATATAAATTA------CATTCTTAACTGAAGTCGGATCGATCGAGT
ACATTGTATATATTTTATTTTCTCACTGTAATCCGGAACTAGCGAGCGACCAATCACCTGAACTGAAGTCCAATTTGTCA
TCCAAGGACGGCAAAGGCAGGTTGGCGAGATCAGCCGCGGTGATGAGATCGTTGCTGCCGAGATCCTCCGCCAGGAATGG
CTCGACCATCTGCCGCTCATCAACGTACGGTAGCGCCTCATGGGGCATGACCACCGCCGGCAGTGGCGGCGACGGCGGCG
ACGTCAAAGAAGACACGCACGGCGCCGACGACGGCACGGTCGCCCCAACATCGTCTTGCTTCAGTCTCATCTCCGACTGA
TTCGACTCATCAGATACAGGATCGGTCTTGTGGCCGTGCACGTTGCGGC---------CCAAGTCTGCCGGCGACGCCGC
TGACCCAATGTCAACCTGAACGTAGCCGCTTAACGAGAAGCGCGTCACGAAGTCATCTTAGGCCGCTTTGGCCTCCGCCT
CAGAAGGGAAGGTGCCGATCCATCGGCGGACGTTGAGGCGATGGCTCCGGAAGTCGGCCACCCACCGGCCGGGCTGTCTT
TCATAGACGCCACGAAATTTTCTCGAGGGTAGTTTAGCCACTTTGGCGCCGCGCATCGATCCTCGGCACCCGCTGCCGGC
AGCCGATTAAGATTCGACTGGCTTGAAGAATGGTTAGGGTTTCTTTGGTGAGGAAGTTACGATAAGTGCCTCAAAGCCCG
CTACGCATCCGCGTTCTGAATTTGGCATCGTGGACCTGTTTGTTGTTGCCTCACTGCCATATTCATCGAGATAAGCATAG
GCCCATCATGTTTCTCGCTCGC
>chr7B_4
---TAGGCACTTTCC-ATATGTACACAGAGGTTTTCTTGACCATACATCATGTGTTTTGCGTGTTCAATCTGCCGGGCTG
CCAGCTATCAA--GTGTGTCCGCCTTACAACTAGAAATTTGGCATTCAAACCGTGCTGAAAAATGAATACTTAGATGAGT
GTGTCCGGCTCCTTTCTAGTCGATCACT--TGTAATGGATCATACGAAGGAGAATCGTTTCACCGAATGGATTATCCTTC
TGTTAAAAAATGAAGTAGAAAGCTGCAGCCAAAGTGGAATTGTGGGATACTAAGCTAATGAATAATACTAATATTGTGTT
AATAAACAGTCGCTTAACCTGTCCCGACATAGCT--ACCTACTTTTGATCCAGGTTTCG--TAGCTACCCCTCTTGGCCA
ACAATTGTTGGAGGATCGACAAGATGCATATAAAGATCCAGTTGGAGGATCAACAAGATGCATACAAAGATCCTGTGATT
ATGTTAACCAATTAACTTGATTAATCTCAACCTGCCTACCTGCTGTTGATCTCAAAACTGCCCCTCTTTGTTTCAACGCA
ACTACCCATCTTCTCGTCTGCCTAGCTAGCTAGCCAACAACCTAAGGTAAGGATTAACAAGATGCACATAAAGATCATAG
ATCCAAGCAGCCTGTCATAGTTATTACTACGATGTATGAAAATTATGATATATCAACAAATGTAGCATGTCATTATGGAA
AGAAAAATATTGTTCGTCGAACCTCAGGTGCAAGAATACGTACTGTTTATGGGGACTAAACTCTAAACACACATAGATTA
TCACTAGATATACCGTGCATGTCATGTTAATCAAACAGTCACAACTTCTGTCAGCATATGAGTTCTTGAGAAAGAAGGAA
AGGTAAACCTAAATTCAACATAATTGTTTAAAGATCTTCATGGTGGAATCACAAGCTACTTAAGTAGCCTGATCGCTACT
TGCTCATCCAACCTTACCCAAAACCGAATCACAGCAGCAAAAACCAAGACAGGGACGACCATACTCACCTCCAAAGTTAG
CTGTGGTCTCCGGCATGGAGAAAACCGTAGCACTAGCTCTGCTGCTACTCTTCACTCTCCTGACCACGGCGCATCGGTTC
GCGGATGGCCAGGCCTTCTGCCGGTCGCAGATCAGCCTCGCAAACGAGGCGTGCAGCCTGAGGACCTTCCCGGGGTCGAG
GCCCCCCTACGTGCCCCGGCAGCTACTCAACGAAACCTCCACGTCGACGACACCCGGCAGCAAGGAGTACGAGCTTCGGA
CCCGGGACGACGACGACGACGACGATGACGATGAAGAAGGGGGAGAACACGAGGGGCGGCACCGGCGTCGACAGCGGCAC
CGCCACAGTGCCGACAACAGC------GACCCGCGTGACACGGCCTGCTGCCGCCGGCTGATGGCCATCGACAACTCGTG
CATCTGCCAGGCATCGGCGCGCCTGCCGGTGTTCATGACCTCGGTGTGGCACGTCATCAAGCTCACGCCGGTGGAGGGCT
GCGAGGTCACCTTCGAGTGCCCTGGCGCCTTGTCACCGCTGGGCTGATCTCATTACATTGATCGATTGATTGCGATTATG
TCTGCTACACCAAATCATCAGTTCACATTCCTTACACAGAGATTGAATTGATCCATAT-----ATATTGTAATAAAGATA
GATTAACAGAAGTTGTACTATCATTGAGAAGAAGATATAAATTAGTACTACATCCTTAACTGAAGTCGGATCGATCGACT
ACATTGTAT----TTTATTTTCTCACTGTCATCCGGAACTAGCGAGCGACCAATCACCTGAACTGAAGTCCAATTTGTCA
TCCAAGGACGGCAAAGGCAGGTTGGCGAGATCAGCCACGGCGATGAGATCGTTGCTGGCCAGATCCTCCGCCAGGAATGG
CTCGCCCATCTGCCGCTCATCAGCATACGGTAGCGCCTCATGGGGCATGACCACCGCCGGCAGTGACGGCGACAGCGGCG
ATGTCAAAGAAGACATGCACGGCGCTGACGACGGCACGGTCGCCCCAACA---TCTTGCTTCAGTCTCATCTCCGACTGA
TTCGACTCATCAGATACAGGATTGATC---------------TTGTGGC---------TCAAGTCTGCAGGAGACGCC--
-GACGCAATGGCAACCTGAACGTAGCCGCTTGACGAGAAGCGCGTCACAAAGTCATCGTACGCCGCTTTGGCCTCCGCCT
CGGAAGGGAAGGTGCCGATCCATCAGCGGACGTTGAGGCGATGGCTCCGGAAGTCGGCCACCCACCGGCCGGGCTGTCTC
TCATAGACTCCACGAAACTTTCTCAAGGGTGATTTAGCCACTTTGGCGCCGCGCATC----CTCGGCACCGGCCGCCGGC
GGCCGCTTAAGATTCGACTGGCTTGAAGAATGGTTAGGGTTTCTCTCGTGAGGAAGTTACGATAAGTGTCTCAAAACCCG
GTACGCATCCGCGTTCTGAATTTGGCATCCTGGACCTG-TTGTTGTTGCCTCACTGC-ATATTCATCGAGATGAGCATAG
GCCCATCATGTTTCTCGCTC--
>chr7D_7
------GTACTTTCCAATATGTACACAGAGGTTTTATTGACCATACATCATGTGCTTTGCGTGTTCAATCTGCCCTACTG
TCAGCTACTTTTGGTGTGTCCGCCTTACAACTAGAGATTTGGCATTCAAACCACGCTGAAAAAGAAATACTTACATGA--
GTGTCCGGCTCCTTTCTAGTCACCTGTAACTGTAATGGATCATACAAAGGAGAATCGTTTCACCGAATGGGTTATAATTC
TGTCAAAAGCTTAAATACAAAGCTGCAGCCAAAGTGGAATTGTGGGATACTAAGCTAATGAATAA---TAATATTTTGTG
AATAAACAGTCGCTTAACCAGTCCCGACCTAGCAACACCTACTTTTGATCCAAGTTTTGTATAGCTACCCGTCTTGGCCA
ACAATTGTTGGAGGATCAACAAGATGCATATAAAGATCCAGTTGGAAGATCAACAAGATCCATACAAAGATCCTGTGATT
ATGTGAATCGATTAACTTGATTAATCTCAACCTGACTACCAGCTGTTGATCTCATAACTGCCCCTCTTTGTTTCAACGCA
ACTACCCATCTTCTCGTCTGCCTAGCTAGCTAGCCAACAACCTAAGGTAAGGATTAACAAGATGCACATAAAGATCATAG
ATCCAAGC---CTGTCATAGTTATTACTACCATGCATGAAAATTATGATATATCGACAAATGTAGCATGTCATTATGGAA
AGAAAAATATTGTTCGTCGCACCTCAGGTGCAAGAATACGTACTGTTTATGGGGACTAAACTCTAAACACACACAGATTA
TCACTAGATATACCGTGCATGTCATGTTAATCAAACAGTCACAACTTCTGTCAGCATATGAGTTCTTGAGAAAGAAGGAA
AGGTAAACCTAAATTCAACATCATTGTTTAAAGATCTTCATGGTGGAATCATAAGCTACTTAAGTAGCCTGATCGCTACT
TGCTCATCCAACCTTACCCAAAACCGAAACACAGCAGCAAAAACCAAGACAGGGACGACCATACTCACCTCCAAAGTTAG
CTGTGGTCTCCGGCATGGAGAAAACCGTAGCACTAGCTCTGCTGCTACTCTTCACTCTCCTGACCACGACCCATCGGTTC
GCGGATGGCCAGGCCTACTGCCGGTCGCAGATCAGCCTCGCAAACGAGGCGTGCAGCCTGAGGACCTTCCCGGGGTCGAG
GCCCCCCTACGTGCCCCGGCAGCTACTCAACGAAACCTCCACGTCGACGACACCCGGCAGCAAGGACTACGAGCTTCGGT
CCCGGGACGACGACGACGACGG---TGACGACGAAGAAGGGGGAGAACACGAGGGGCGGCACCGGCGTCGACAGCGGCAC
CGCCACAGCGCCGCCAACAGCGAGATGGACCCGCGTGACACGGCCTGCTGCCGGCGGCTGATGGCCATCGACAACTCGTG
CATCTGCCAGGCGTCGGCGCGCCTCCCGGTGTTCATGACCGCGGTGTGGCACGTCATCAAGCTCACGCCGGTCGAGGGCT
GCGAGGTCACCTTCGAGTGCCCTGGCGCCTTGTCACCGCTGGGCTGATCTCATTACATTGGTCAATTGATTGCGATTATG
TCTACTACACCAAATCG----------------------AGATTGAATTCTACTGCTTGATCCATATTGTAATAAAGATA
GATTAACAGAAGCTGTACTATCATTGAGAAGATATAAATTACTA------CATTCTGAACTGAAGTCGGATCCATCGACT
ACATTGTAT----TTTATTTTCTCACTGTAATCCGGAACTAGCGAGCGACCAATCACCTGAACTGAAGTCCAGTTTGTCA
TCCAAGGACGGCAAAGGCAGGTTGGCGAGATCAGCCGCGGCAATGAGATGGTTGCTGGCGAGATCCTCCGCCACGAATGG
CTCGCCCATCTGCCGCTCATCCGCGTACGGGAGCGCCTCATGCGGCATGACCGCCGCCGGCAGTGGCGGCGACGCCGGCG
ATGTCAAAGAAGGCATGCACGGCGCCGCCTC---------CGCCCCCGCA---TCTTGCTTCAATCTCATCTCCGACTGA
TTCGATTCATCTGATACAAGATCGATC---------------TTGTGGCCGTTGCGACTCAAGTCTGCCGGCGACGCC--
-GTCACAATCGCAACGTGAACGTAGCCGCTTAAGGAGAAGCGCGTCACGAAGTCATCGTAGGCCGCTTTGGCCTCCGCCT
CGGAAGGGAAGGTGCCGATCCATCGGCGGATGTTGAGGCGATGGCTCCGGAAGTCGGCCACCCACCGGCCGGGCTGTCTT
TCATAGACGCCACGAAACTTTCTCGAGGGTGGTTTAGCCACTTTGGCGCCGCGCATC----CTCGGCACCCGCCGCCGGC
GGCCGCTCAAGTGT---CTGGCTTGAAGAATGGTTAGGGT----------------------------------------
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>SNPs
SSS-------------SSSSS-----------------------------------------------------------
----------------------------------S---------------------------------S---S-------
---------------S----S-------------S--S--------------------------S--S------------
---------------------------------------S-------SS-------------S-----------------
----------------------------------------------------------------S---------------
-S----------------------------S------S------------------------------------------
---------------------------------------------------S--------------------------S-
--------------------------------------------------------------------S-------S---
-----------------------------S--------------------------------------------------
-----------------------------------------------S-----S---------------S----------
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------------------------------------------------S-------------------------------
----------------S---------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------S----S------------------------
------------------------------------S-------------------------------------------
-----------------------------S----S--------------S------------------------------
-----------------------------------------S---------------------S----------------
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------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S-------------------------------------------------------------------S-
---------SSSS-------------------------------------------------------------------
----------------------------------------S----------------S----------------------
----S-----------------S---------------------------------------------------------
-S-------------S----------------------------------SSS---------------------------
------------------------S--SSSSSSSSSSSSSSS---S------------S-------------------SS
S---S-----S----------------------------------------------S----------------------
-S------------------------------------------------------------------------------
-----------------S------------S--------------------------SSSS------------S------
S----S--------------------------------------S-S---------------------S------S----
S----------------------------S--------S------------------S--------------S-------
--------------------SS
>forward_176
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----------------------------------------------------------------------------ATGA
GTGTCCGGCTCCTTTG----------------------------------------------------------------
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>reverse_2002
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-CGTCAAAGAAGACACGCACG-----------------------------------------------------------
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