>input_sequence_78006
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----------------------------------------------------------ATGGCCGGC-------GCCGGT
GCCGCAGCAGCGATCAGCTCGGAGCAGATGAGCGAGTTCCGGGAGGCCTTCGCCTTCTTCGACAAGGACGGCGACGGCTG
CATCACGGCGGAGGAGCTGTCCACGGTCATCCGCTCCCTGGGCCAGTCCCCGACGCCCGAGGAGCTGCGCGACATGGTGC
GCGACGTGGACGCCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTGGCGCTCATGTCCCGCAAGGCCGACGCCGAC
GCGGACGCCGCCGACCCCGAGGAGGAGCTCCGGGAAGCCTTCAGGGTGTTCGACAAGGACCACGACGGCCACATCTCCAA
GGCCGAGCTGCGCCACGTCATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTCGACGGGATGATCCAGGAGGCCG
ACCTCGACGGCGACGGCCTCGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACGCCGACCAGCAGCAGCAG
CAGCAGCA---TTGA-----------------------------------------------------------------
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>chr5D_1_TraesCS5D01G068000
AAGTGTCGCCGTCGAGAGAAACACGCAGCACTACAATTCTATTCCGGTGTTCCCCCAGACAGGCCTCAGAACAATA---T
TCTCTGTGCCACTGTACCGATACAATATGCATGTGAACTTCGAGCTGGTCGTATAACCAGACCAGACATTCTGAAATCTC
TGGGAATTATGGTGCGCATTTGCACACGTACGTACACTTGCCAAATTATATGAACCTATTATTGTT-AGTAGGAACACTG
GTTTGGGCCAG-AAGTGCAGGACGACAGTGC----AGAGGATGCGAATCCGCGTTTGCGTGGGCGGAAGCGGACACCGCA
CCGACCGAGCCGTGTGTCGCCCGCAGCCCCGACCTCTCCAGCTGTTCACAGCTACGCCCGGGCCGCCCATGGCGCTGCTG
GACGGACGCGTCCTCGAGATTAACAAAACCACGTCACGGGCGGTGCGCCCCGTGCCGCCACCAGTTTACTACTCCATCAT
ATTAGATCACGTCTTAGCAAAGCG----------------------------------ACCGTATAGAAAATGTCCAAAG
TTG--------------------GTCCGCGAAGGAGGAGTATTCGATTCAAATTGCAAACATTTCGTTTCGCCTTTGCGC
TTTGTTCCGTTTCCCGTACGTGCAGATATATTTTGCACTTTTA-------GAAGAATGCATCTTCCTCCTTTTTAAAACT
GTTTAGGTTTTTGCACTTTGGGAACGCGTGCGTGCGTGCGGTGGGGCGCTGATCTGCATCGACCGATCTCCTTTGACTTG
GCTTGGCCT-------------AGGATTGAAGACGGGATTACTGGAATTAATGCGTGCGCGTGTGTGACAGACGAGTCAA
CGGCAGCCACACAGCTTCTC-CTCCCGCGTTCAGATCTCCGACATGACCGTTCGTGCCTCTGCTTCCCATCCGCCTCCTA
TATAAATCCCCCACCTCACAATCCTCTGAACCCATCCAACTTAATCTCGCCTTCAT-TCCT------------CCTACCC
ACCCACATCGATCACTCCATCGTCATCTCTGTGCCCGCATCGAA-AAGAGGTAGCAGGATGGCCGGC-------GCCGGT
GCCGCAGCAGCGATCAGCTCGGAGCAGATGAGCGAGTTCCGGGAGGCCTTCGCCTTCTTCGACAAGGACGGCGACGGCTG
CATCACGGCGGAGGAGCTGTCCACGGTCATCCGCTCCCTGGGCCAGTCCCCGACGCCCGAGGAGCTGCGCGACATGGTGC
GCGACGTGGACGCCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTGGCGCTCATGTCCCGCAAGGCCGACGCCGAC
GCGGACGCCGCCGACCCCGAGGAGGAGCTCCGGGAAGCCTTCAGGGTGTTCGACAAGGACCACGACGGCCACATCTCCAA
GGCCGAGCTGCGCCACGTCATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTCGACGGGATGATCCAGGAGGCCG
ACCTCGACGGCGACGGCCTCGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACGCCGACCAGCAGCAGCAG
CAGCAGCA---TTGAGAGTTTGTCCGAGACTAG------GAAATATAGTCCGTCCGTCCGTCGTCCATTTCTT-CGGTGG
ACGGACGGACACCTCTCTAATCCGCCCGGGGATTAAGTTAGCTAAGCTAGCCATGCATGTGTGGATGAATGGATCTTGAA
TTCTTGATTGATTATTTACAACTGTTATTGGAAA-AGCTAGAGATTAAA--TAACTAACTAAAGAAAAGAAAAAACTAAC
TGAACGTGGTGATTCTGTTCCGTCGGCGCCAGCGGTGCATATAATTAAATAATTTTCACCAGTGATTATCCAACTCAAAC
CATTTTACTTTCTTTTTTTAGAATTACTCAAACCACG--GTACTTATCGAACTCTAACCTCTGTACCACATGACATATGT
GGTAAGCAATTCAAACCAATCCAAAAGAGCTCTAACCTCTGTAATCCCGGTCGAGCAGTGGCGGATACAGGCCCCAGGCC
TCGAGCGTGAGGCCCAAGTGCTCTGGTGTGACTGAATGCATCCAGTGCAGCTCTGCCCGAATTATTCTTGGGGCTGAAAG
ATTGATGTCTTTTTACGCCTCGTTTGGCTCCCAAGAATTGAATTTGATTCATTTGATAGGATTCCAAATCAAGTTATATA
GCACTTGAATTTAAATTCAATTCCAATATTCACGTGTCATGTGGAAATGTAAGCCATTCATTTTTCTAAACTACGTTGTT
TAGTATTTGAACCCCACCTCATGTTTTTGTTTACTAGGACAGTGCCCGTGCAATGCAACAGGATATAAATATGGTAAACG
TTTGGCAATAGTGCGCGGCCGAGTTTGCGCCGGTCGCACGATGCGTCGCCACGCGGGTCCTTGCTGGCATGTGCTACCTC
CCTGCATCGGCATGTTTTCTTTGTCGGGCCCACGCCTGTCCCTTCCTCTTTTGTATTTTTTCTCCTTCCTTATCCTCTTC
CTCCCTCCCGTCATTTTCCTCCCCTCATTCCCTCTCTGTTTCTTCTTTTCCTCCATGGATCTCTCCT
>chr5B_1
AAGTGTCGCCGTCGAGAGAAACACGCAGCACTACAATTCTATTCCCGTGTTCCCCCAGACAGGCCTCAGAATAATA---T
GCTCTGTGCCACTGTACCGATACAATATGCATGTGAACTTTGAGTTGGTCGTATAACCAGACCAGACATTCTGAAATCTC
TGGGAATTATGGTGCGCATTTGCACACGTACGTACACTTGCCAAATTATATGAACCCATTATT-------AGGAGCACTG
GTTTGGGCCAG-AAGTGCAGCACGACAGTGCAGAGAGAGGATGCGAATCCGTGTTTGCGTGGGCGGAAGCGGACACCGCA
CCGACCGAGCCGTGTGTCGCCCGCAGCCCCGACCTCTCCAGCTGTTCACAGCTCGGCCCGGGCCGCCCATGGCGC---TG
GACGGACGCGTCCTCGAGATTAACAAAACCACGTCACGGGCGGTGTGCCTCGTGCCGCCACCAATTTACTACTCCATCGC
GTCTTCAAGTTAACAATGCGATCAACTAAAGAAAAAGAGTTAACAATGCGATCCCACTACCGTATAGAAAATCTTCAAAT
GAGAAAAAGAAATGTAGA---TAGTCCGCAAAGGAGGTGTATTCGATTCAAATTGCAAGCATTTTTTT--GCCTTTGCGC
TTTGTTCCGTTTCCCGTACGTGCAGATCGATTTTGCACTTTTAGAAGAAGGAAGAATCCATCTTCCTCCTCTTTAAAACT
GTTTAGATTTTGCA--TTTGGGAACGCGTGCGTGCGTGCGGTGGGGCGCTGATCTGCATCGACCGATCTCCTTTGACTTG
GCTTTGCCTTGGCCAGCCTAGGAGGATTGAAGGCGGG---ACTGGAATTAATGCGTGCGCGTGTGGGACAGACAAGTCAA
CGGCAGCCACACAGCTTCTCGCTCCCGCGTTCAGATCTCCGACATGACCGTTCGTGCCTCTGCTTCCCATCCGCCTCCTA
TATAAATCCCCCGCCTCACAATCCT-TGAACCCATCCAAGTTAATCGCACCTTCAGCTTCATTCCTTCTCCAACCCACCC
ACCCACATCGACCA-----------TCTCCGTGCAAGCATCGAAGAAGAGGTAGCAGGATGGCCGGC-------GCCGGT
---GCAGCAGCGATCAGTTCGGAGCAGATGAGCGAGTTCCGGGAGGCCTTCGCCTTCTTCGACAAGGACGGCGACGGCTG
CATCACGGCGGAGGAGCTGTCCACGGTCATCCGCTCCCTGGGCCAGTCCCCGACGCCCGAGGAGCTGCGCGACATGGTGC
GCGACGTGGACGCCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTGGCGCTCATGTCCCGCAAGGCCGACGCCGAC
GCCGACGCCGCCGACCCAGAGGAGGAGCTCCGGGAGGCCTTCAGGGTGTTCGACAAGGACCACGACGGCCACATCTCCAA
GGCCGAGCTGCGCCACGTCATGATCAGCCTCGGCGAGAAGCTCACCGACGACGAGGTGGACGGGATGATCCAGGAGGCCG
ACCTCGACGGCGACGGCCTCGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCAGACGCCGACCAGCAGCAGCAG
CAGCAGCAGCATTGAGAGTTTGTCCCTGCCGAGATACTAGATATACAGTCCGTCCGTCCGTCGTCCATTTC-T-CGGTGG
ACGGACGGACACCTCTCTAATCCGCCCGGGGAT-AAGTTAGCTAAGCTAGCCATGCATGTGTGGATGAATGGATCTTGAA
TTCTTGATTGATTGGTTACAACTGTTATTGGAAA-AGCTAGAGATTATAAATAACTAATTGAAGAAGAAAAG--ACTAAC
TGAACGTGGTGATTCTGTTCCGTCGGCGCCAGCGGTGCAGATAATTAAATAATTTTCTCCAGTGATTATCCAACTCAAAC
CATTTTACTTTCTTTTTTCAGAATTACTCAAACCACTTAGTACTTATCGAACTCT-------------------------
---------------------------------AACCTCTGTAATCCCGGTCGAGCAGTGGCGGATACAGGCCTCGG---
----GCGTGAGGCCCAAATGCTCTGGTGTGACTGAATGCATCCGGTGCAGCAA---------------------------
----ATGTCTTTTTACGCCTCGTTTTGCTCCCAAGAATTGAATTTGATTCATTTGATAGGATTCCAAATCAAGTTATATA
GCACTTGAATTTAAATTCAATTCCAATATTCACGTGTCATGTGGAAATGTAAGTCATCCATTTTTCTAAACTACGTTGTT
TAGTATTTGAACCCCACGTCATGTTTTTGTTTACGAGGACAATGCCCGTGCAATGCAACAGGATATAAATAT--------
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>chr5A_30
-----------------------------ACTACAATTCTATTCCCGTGTTCCCC-AGACAGGCCTCAGAATAATACTGT
GCTCTGTGCCACCGTGCCGATACAATATGCATGTGAACTTGGAGCTGGTCGTGTAACCAGACCAGACATTCTGAAATCTC
TGGGAATTATGGTGTG----------CGTACGTACACTTGCCAAATTATATGAACCTATTATTGTTAAGTAGGAACACTG
GTTTGGGCCAGGAAGTGCAGCAGGACAGTGC----AGAGGATGCGAATCCGTGTTTGCGTGGGCGGAAGCGGACACCGCA
CCGACCGAGCCGTGTGTCGCCCGCAGCCCCGACCTGTCCAGCTGTTCACAGCTACGCCCGGGCCGCCCATGGCGC---TG
GACGGACGCGTCCCCGAGATTAACAAAACCACGTCACGGGCGGTGCGCCCCGTGCCGCCACCAGTTTACTACTCCAGCA-
--TAGATCACGACTTCAACTAGAC--------------------------------------TATAGAAAATCTTCAAAT
GAAAAAAAGAGCATGCAGATGTAGTCCGCAAAGGAGGAGTATTCGATTCAAATTGCAAGCATT---TT--GCCTTTGCGA
--------------------------------------TTTCA-------GAAGAATCCATCTTCCTCCTTTTCTAAACT
GTTTAGATTT-TGCACTTTGGGAACGCGTGCGTGCGTGCGGTGGGGCGCTGATCTGCATCGACCCATCTCCTTTGACTTG
GCTTGGCCT-------------AGGATTGAAGACGGGATTACTGGAATTAATGCGTGCGCGTGTGTGACAGACGAGTCAA
CGGCAGCCACACAGCTTCTCCCTCCGGCGTTCAGATCTCCGACATGACCGTTCCTGCCTCTGCTTCCCATCCGCCTCCTA
TATAAA-CCACCACCTCACAATCCTCTGAACACATCCAAGTTAATCGCACCTTCAGCTTCATTCCTTCTCCTACCCACCC
ACCCACATCGACCAATCCATAGCCATCTCCGTGCAAGCATCGAAGAAGAGGTAGCAGGATGGCCGGC-------GCCGGT
GCCGCAGCAGCGATCAGCTCGGAGCAGATGAGCGAGTTCCGGGAGGCCTTCGCCTTCTTCGACAAGGACGGCGACGGCTG
CATCACGGCGGAGGAGCTGTCCACGGTCATCCGCTCCCTGGGCCAGTCCCCGACGCCCGAGGAGCTGCGGGACATGGTGC
GCGACGTGGACGCCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTGGCGCTCATGTCCCGCAAGGCCGACGCCGAC
GCGGACGCCGCCGACCCCGAGGAGGAGCTCCGGGAGGCCTTCAGGGTGTTCGACAAGGACCACGACGGCCACATCTCCAA
GGCCGAGCTGCGCCACGTCATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTGGACGGGATGATCCAGGAGGCCG
ACCTCGACGGCGACGGCCTCGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACGCCGACCAGCAGCAGCA-
-----------TTGAGAGTCTGTCCGAGATAGATATATAGTCC----GTCCGTCCGTCCGTCGTCCATTTC-TTCGGTGG
ACGGACACATCTTGTCGGGGAGG-----------AAGTTAGCTAAGCTAGCCATGCATGTCTGGATGAATGGATCTTGAA
TTCTTGATTGATTGGTTACAACTGTTATTGGAAAAAGCTAGAGATTATA--TAAATAATAAAAG--------AAACTAAC
TGAACGTGGTGATTCTGTTCCGTCGGCGCCAGTGGTGCAGAGAGTTAAATAATTTTCTCCAGTGATTATCCAACTC----
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>chr5D_871
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--------------------------------------------------------------------------CTCCTA
TATAAA-TCTCCACCTCCCCGACCTCTAAACCCATCCAAATCGATCTCACCTTCAT-TTCT------------CGAT-CT
ACCCATATCGATCACTCCATCGTCATCTCTGTGCTGCTGCATCATCAACAACAACAACACCAACAACAATGGCTGCCGGT
---GCAGCGGCGATCAGCTCGGAGCAGATGAGCGAGTTCCGGGAGGCCTTCTCCTTCTTTGATAAGGACGGCGACGGCTG
CATCACGGCGGATGAGCTGTCCACGGTCATCCGCTCCTTGGGCCAGACCCCGACGCCCGAGGAGCTGCGCGACATGGTGC
GCGACGTGGACGCCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTGGCGCTCATGTCCCGCAAGGCCGACGCGGAC
GCGGACGCCAGCGACCCCGAGGAGGAGCTCCGGGAGGCCTTCAGGGTGTTCGACAAGGACCACGACGGCCACATCTCCAA
GGCCGAGCTGCGCCACGTCATGGTCAGCCTCGGCGAGAAGCTCACCGACGTGGAGGTGGAGGAGATGATCCAGGAGGCCG
ACCTCGACGGCGACGGCCTCGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACTCCGACCAGCAGCAGCA-
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>chr5B_871
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--------------------------------------------------------------------------CTCCTA
TATAAA-TCTCCACCTCCCTGACCTCTAAACCCATCCAAATCGATCTCACCTTCAT-TTCATTTCT--------CTAGCT
ACCCACATCGATCACTCCATCGTCATCTCTGTGCTGCTGCAT------------------CAACAACAATGGCTGCCGGT
---GCAACGGCGATCAGCTCGGAGCAGATGAGCGAGTTCAGGGAGGCCTTCTCCTTCTTCGACAAGGACGGCGACGGCTG
CATCACGGCGGAGGAGCTGTCCACTGTCATCCGCTCCCTGGGCCAGACCCCGACGCCCGAGGAGCTGCGCAACATGGTGT
GCGACGTGGACGCCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTGGCGCTCATGTCCCGCAAGGCCGACGCGGAC
GCGGACGCCAGCGACCCCGAGCAGGAGCTCCGGGAGGCCTTCAGGGTGTTCGACAAGGACCACGACGGCCACATCTCCAA
GGCCGAGCTGGGCCATGTCATGATCAGCCTTGGCGAGAAGCTCACCGACGAGGAGGTCGAGGAGATGATCCAGGAGGCCG
ACCTCGACGGCGACGGCCTCGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACGCCGACCAGCAGCAGCA-
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>chr5A_871
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--------------------------------------------------------------------------CTCCTA
TATAAA-TCTCCGCCTCCCTCACCTCTAAACCCATCCAAATCGATCTCACCTTCAT-TTCATTCCT--------CTAGCT
ACCCACATCGATCACTCCATCCTCATCTCTGTGCTGCTGCTGCTG------CAACAACACCAACAACAATGGCTGCCGGT
---GCAGCGGCGATCAGCTCGGAGCAGATGAGCGAGTTCCGGGAGGCCTTCGCCTTCTTCGACAAGGACGGCGACGGCTG
CATCACGGCGGAGGAGCTGTCCACGGTCATCCTCTCCCTGGGCCAGACCCCGACGCCCGAGGAGCTGCGGGACATGGTGC
GCGACGTGGACGCCGACGGCAACGGCACCATCGAGTTCGCCGAGTTCCTGGCGCTCATGTCCCGCAAGGCCGACGCCGAC
GCGGACGCCAGCGACCCCGAGGAGGAGCTCCGGGAGGCCTTCCGGGTGTTCGACAAGGACCACGACGGCCACATCTCCAA
GGCCGAGCTGGGCCATGTCATGATCAGCCTTGGCGAGAAGCTCACCGACGAGGAGGTGGAGGAGATGATCCAGGAGGCCG
ACCTCGACGGCGACGGCCTCGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACTCCGACCAGCAGCAGCA-
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>SNPs
---------------------------------------------S-------------------------S--------
S---------------------------------------S---------------------------------------
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--------------------S------------------------------S----------------------------
---------------------------------------------------------------------------SSS--
-------------------------------------------------------------------------------S
S----------S----SSSS---S------------------------------------------------S-S----S
SS---------------------------S----------------------------S-----SS--SS----------
---------------------------SS----------------------------S----------------------
------S-------------------------------------------------------------------------
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---------------------------------------S--------S---------S---------------------
----------------------------------SS--------------------------------------------
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-----------------------------------S--------------------------------------------
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------------------------------S----------S---S-------------------------S--------
---------------------------------S----------------------------------------------
-------------SS--------------------------------S----------S-------S-S--S--------
---------------------------------------S-----------------S----------------------
------------------S-----------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------S-S-SSS
SSSS-------------S-------------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS---------------------S------------------------------------------------------
-----------------------------------------------------S---S----------------------
-----------------S----------------S------S------------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1075
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---------------TCCATCGTCATCTCTGTGCC---------------------------------------------
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>reverse_2494
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-------------GTTTTCTTTGTCGGGCCCAC-----------------------------------------------
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