>input_sequence_78000
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----------------------------------------------------------------ATGGCTCTTGTTGCCG
ACGAGCTCAAGGCCAAGGCCGAGGTGTACTACGACGATGAGATTTGCCAGCAGTGCACCAGGCTCCTGCTCAAGGAAGCA
GGCCTCCCCAATGGCCTGCTTCCCCTGAAGGACATCATGGAGTGCGGCTATGTCGAGGAGACTGGGTATGTGTGGCTCAA
GCAAAAGAAGAGGATAGACCACGTCTTCCAGAGCCTGGGGAGGGTGGTGTCTTATGGCACTGAGATCACTGCCTTCGCCG
AGAAGGGCAGGATCAAGAAGGTCAAAGGGATAAAGACCAGGGAGCTCATGGTGTGGCTCCCTGTGGAGGAGATCTCCCTT
GACGAACCAGCGACTGGTAAGCTCATCTGCAAGAGCATTGCCGGCTTTTCTAAGATCTTCCCTGCATCAGCTTTCCACAT
CCCAGAGAAGGAGAATGAGAAGGCCAACTGTGCCGGACCAAAACCAGTGGTCCTCATGGAGAGGGCAGCACCAGTTGTTA
AGAACAACTGA---------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G143300
GGGTGGCAGCTTACAGTTAGGGCAGCAAGGAGGTCCCAAGTGCCAGGATAAAACTGTACTGGATA---------------
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-----------------------------------------TACCCAGATCAAGCTTGGAAAAAATTCCCGCCCTTCTCA
TTAAAGGATACCCTAAAAAAAGGGAT-CTTTTACCTGGTAGTAATTTGCATGTTAACAACAATCCCAACTCAGGAGCTGG
AGCTGGTAAGTGCACTACCCAAAT----TAGTATACTGAATAAAGATGTTATTAGAACTAAGTTGTTG-TTTTTTGCTTA
TTTATGCTTAGCAACAGGAAGATTGAATGCTAGCATTGGATAAGACTATTGTTCCC-----AAACTACAAGGAAAATGGA
AGAGAAGGATGAAATACTCACCTTTGTGGCCATTTACTCGGTAGCCAAGCACTCTCCTCTCA------------------
-----------------------------------------------------CTCATGCATAAATTATACTCCCTCCGT
CCCAAAAATGATCT--TATATTGGGACGGAGGTCGGAGGGAGTATATATATAGGACAGAACGGAAGACAACAGACGAACG
CCATGCTCACCCTAGAGTGTTGAGCACATACTTCTTCATAGCAGTAAACGTTTGAAAGAAAATAGGTTTGTTCAGTTTAT
ATCACCTTTTGTGTTGAGGCGGTTAAAATTAAGGTAAACCAAGAAAAACAACCCAAATCGCTGGAAAGATTCCTACTCTG
TAATCTGGACAGTCATGTTTCTGTATGATACAAGAATAGATGATATTTTGCATCCTTGCAAAAGTTCACCGCCAGAAGAG
GACCCCTAC---------------------------------------GGCTTTCATGAGCATGGTACACTGCAATGCAT
TGAATGATAATGGCAAGAAGGAAAAATTCATGCAAGATAATAAGGCGCAATTGCACAAGACATGTCCTATATAAAGGTGG
CCATTTCCACTACGAAGCACAAAACCATACACATCTAAGCCTCAGAAACTTGCTTGGGAGCAAAAAAAAAAAAAAAAAGA
GAGGGAAAGAAGAGCGAGCGAGAGTGAGTGAGAAGAGAGACATCATCCACCC-----TCAGACAATGGCTCTTGTTGCCG
ACGAGCTCAAGGCCAAGGCCGAGGTGTACTACGACGATGAGATTTGCCAGCAGTGCACCAGGCTCCTGCTCAAGGAAGCA
GGCCTCCCCAATGGCCTGCTTCCCCTGAAGGACATCATGGAGTGCGGCTATGTCGAGGAGACTGGGTATGTGTGGCTCAA
GCAAAAGAAGAGGATAGACCACGTCTTCCAGAGCCTGGGGAGGGTGGTGTCTTATGGCACTGAGATCACTGCCTTCGCCG
AGAAGGGCAGGATCAAGAAGGTCAAAGGGATAAAGACCAGGGAGCTCATGGTGTGGCTCCCTGTGGAGGAGATCTCCCTT
GACGAACCAGCGACTGGTAAGCTCATCTGCAAGAGCATTGCCGGCTTTTCTAAGATCTTCCCTGCATCAGCTTTCCACAT
CCCAGAGAAGGAGAATGAGAAGGCCAACTGTGCCGGACCAAAACCAGTGGTCCTCATGGAGAGGGCAGCACCAGTTGTTA
AGAACAACTGATCCATACTTCAATCCTGCTCCTATGTACGTACTAAAAATAATCGTCGAACTGGTGCTTTACTATT---T
TGCTTATGTACTTC----AAAAGGTGATAGCCCAAAGTCCTGCCTATAT--AGCAGTGTATGGCTGTCCTGGTATTTATA
AACCTCTAAGCCAACCGCCCAAACTCCTTTTATCTACTACACCCTCTGTAAACTAATGTAAGAGCGTTTAGATCACTACT
TTAGTACTCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACTTCATAGCTCCATGTTACTCATATG---TACTACCAT
ATTATGGATGGATTTTATATGATATGCTTTCCCATTCTCTTTCCCATTTTGGTCAAGATAATATACTACTATGAGATCCT
TTGATTTCCCTTTCACCATCAAAGAAACTAATGACAG-GCATGAGATAAAAGGAACAAAATTTCACTGCATGTCGTGTAG
ACATGACCCGTCAATGGTCTTCACAACCATCTGTTGTCTCTTGCAGTAATAGATATTAACAGG-ACAAGTACAGGCAGCA
AGTGGAATGTGAAGGTTAACAG-ATATTGGCAGGTACAAGTACAGCAAGTGGAATATGACTAGTTTCATTAGTTAGCCCA
AGGCAGGGTAACATTTTTAGGTTCGACCATCAGTATAGAAACAAATACCAACATCTACAACACTAAACTGACACTACAAG
ATCGATCTATCATTAAATACACTTATATTCTATCATACAGGTTTTGGAAAGTCAGGCAAAGGCCAGTGCTGTTCCAACAA
GATTTGGCGATGCTTTCCTTCCCAAAATGAAAAAACATTGCAGTGCTAAATTTAGACATGAATCCATGAGCTCATGCAGG
AGGATGGATCTGCATTGATCCCTCAGAATGGATCAAATTGGATT----------------------------------AG
GTGGTTACGCCTATGCATGTGAACAAGCCAAACCATAGAGCCTGCTCACTTACACTACACCCACCCCGACAGGTATGAAT
TCATTTATCCAACAAACATA
>chrUn_1
GGGTGGCAGCTTACAGTTAGGGCAGCAAGGAGGTCCCAAGTGCCAGGATAAAACTGTATTGGATA---------------
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-----------------------------------------TACCCAGATCAAGCTTGGAAAAAATGTCCGCCCTTCTCA
TTAAAGGATACCCTAAAAAAAGGGATACTTTTACTTGGTAGTAATTTGCATGTTAACAACAATCCCAACTCAGGAGCTGG
AGCTGGTAAGTGCACTACCCAAATACAGTAGTATACTGAATAAAGATGTTATTAGAACTAAGTTGTTGTTTTTTTGCTTA
TTTATGCTTAGCAACAGGAAGATTGAATGCTAGCATTGGATAAGACTATTGTTCCC-----AAACTACAAGGAAAATGGA
AGAGAAGGATGAAATACTCACCTTTGTGGCCATTTACTCGGTAGCCAAGCACTCTCCTCTGTGGCCGTATGCATCGTTCT
GATGCAGAGGCCGGGGAGTCCCCCCTTTTCTAAAAAAAAGCACTCTCCTCTTGCTCATGCATAAATTATACTCCCTCCCT
CCCAAAAATGATCTTATATTTTGGGACGGA-------GGGAGTATATATATAGGACAGAACGGAAGACAACAGACGAACG
CCATGCTCACCCTAGAGTGTTGAGCACATACTTCTTCATAGCAGTAAACGTTTGAAAGAAAATAGGTCTGTTCAGTTTAT
ATCACCTTTTGTGTTGAGGCGGTTAAAATTAAGGTAAACCAAGAAAAACAACCCAAATCGCTGGAAAGATTCCTACTATG
GAATCTGGACAGTCATGTTTCTGTATGATACAAGAATATATGATATTTTGCATCCTTGCAAAAGTTCACCGCCAGAAGAG
GACCCCTAC---------------------------------------GGCTTTCATGAGCATGGTACACTGCAATGCAT
TGAATGATAATGGCAAGAAGGAAAAATTCATGCAAGATAATAAGGCGCAATTGCACAAGACATGTCCTATATAAAGGTGG
CCATTTCCACTACGAAGCACAAAACCATACACATCTAAGCCTCAGAAACTTGCTTGGGAGCAAAAAAAAAAAA-----GA
GAGGGAAAGAAGAGCGAGCGAGAGTGAGTGAGAAGAGAGACATCATCCACCC-----TCAGACAATGGCTCTTGTTGCCG
ACGAGCTCAAGGCCAAGGCCGAGGTGTACTACGACGATGAGATTTGCCAGCAGTGCACCAGGCTCCTGCTCAAGGAAGCA
GGCCTCCCCAATGGCCTGCTTCCCCTGAAGGACATCATGGAGTGCGGCTATGTCGAGGAGACTGGGTATGTGTGGCTCAA
GCAAAAGAAGAGGATAGACCACGTCTTCCAGAGCCTGGGGAGGGTGGTGTCTTATGGCACTGAGATCACTGCCTTCGCCG
GGAAGGGCAGGATCAAGAAGGTCAAAGGGATAAAGACCAGGGAGCTCATGGTGTGGCTCCCTGTGGAGGAGATCTCCCTT
GACGAACCAGCGACTGGTAAGCTCATCTGCAAGAGCATTGCCGGCTTTTCTAAGATCTTCCCTGCATCAGCTTTCCACAT
CCCAGAGAAGGAGAATGAGAAGGCCAACTGCGCCGGACCAAAACCAGTGGTCCTCATGGAGAGGGCAGCACCAGTTGTTA
AGAACAACTGATCCATACTTCAATCCTGCTCCTATGTACGTACTAAAAATAATCGTCGAACTGGTGCTTTACTATT---T
TGCTTATGTACTTC----AAAAGGTGATAGCCCAAAGTTCTGCCTATAT--AGCAGTGTATGGCTGTCCTGGTATTTATA
AACCTCTAAGCCAACCGCCCAAACTCCTTTTATCTACTACACCCTCTGTAAACTAATGTAAGAGCGTTTAGATCACTACT
TTAGTACTCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACTTCATAGCTCCATGTTACTCATATG---TACTACCAT
ATTATGGATGGATTTTATATGATATGCTTTCCCATT------------TTGGTCAAGATAATATACTACTATGAGATCCT
TTGATTTCCCTTTCACCATCAAAGAAACTAATGACAG-GCATGAGATAAAAGGAACAAAATTTCACTGCATGTCGTGTAG
ACATGACCCGTCAATGATCTTCACAACCATTTGTTGTCTCTTGCAGTAATAGATATTAACAGG-ACAAGTACAGGCAGCA
AGTGGAATGTGAAGGTTAACAG-ATATTGGCAGGTACAAGTACAGCAAGTGGAATATGACTAGTTTCATTAGTTAGTCCA
AGGCAGGGTAACATTTTTAGGTTCGACCATCAGTATAGAAACAAATACCAACATCTACAACACTAAACTGACACTACAAG
ATCGATCTATCATTAAATACACTTATATTCTATCATACAGGTTTTGGAAAGTCAGGCAAAGGCCAGTGCTGTTCCAACAA
GATTTGACGATGCTTTCCTTCCCAAAATGAAAAAACATCGCAGTGCTAAATTTAGACATGAATCCATGAGCTCATGCAGG
AGGATGGATCTGCATTGATCCCTCAGAATGGATCATCATGATGCAGAGGCCGGGGGCATGCCTCCATTTCCAAAAAAAAG
GTGGTTACGCCTATGCATGTGAACAAGCCAAACCATAGAGCCTGCCCACCTACACTACACCCACCCCGACAGGCATGAAT
TCATTTATCCAACAAACA--
>chr4A_1
GGGTGGCAGCTCACAGTTAGAGCAGCAAGGAGGTCCCAAGTGCCAGGATAAAACTGTAGGACGGGGATCAGGTGACTGCC
TTCACGCTGTAACATGCGGGCACACATCCAACGGCCATCAACAATCAAAGTGAAAAAAAGCTCCAGATCTAGCACACGCA
CACACGGAGACGCCCACACTTGTAGTTTTCATGTACATCCAACAGCAGCTATGCATTTCTCTAAAAAAACAGTAGCTATG
CATTAAGAGCAACTCCAACACAGCGAGGCAATCCGTCTGTGTGTCCGCGCGGAAAAGATGGATAGACCAAAGCAAAACAC
AGTGTCAGGTGTTCGGACAAATTTTCGTCCCAAATTTGACTCAGATTTGGGTTGGAGACGGACACAAAGCGAACGTTTTC
TGCGTTTTCTTCGTCCACCTCCGTCAGCTGCATGCCCCGCCTGGTCTAGCTGCCATCCACCCATCCATCTTTTTATTTAT
TTTTTCTTTCTCACCACGCGGCACACCTCGCCAGTAGCAGCCACGGTATCGCCCCGGCCACGTCGCCGGTGCAGCGACTC
CCCCCGCAGCTACTCGCTAGCCAGCTACTACTCCGAGACGCCACCGATATAACAGCTCCCCGTCGGGTGGGATCGGATGC
CTCGGCCACGCCGCTGGGGAAGGAGCAGCATTAGTTGTGCACGCCGGCACAAAGCGGAAACGTATCTGGTGCACCGGGGC
AATTTGTCATTTTTTATCTCGAGCAATGTTTCAAATTTTGATTAATTTTTTTATGGAAACATACATTGATATTGTGTCAA
TGCACCAATTTTTTTGAACATTTTAGAATGTGGAACGGGGGACCGGTGCGCTGGTAGCATCAATTGCCCCGGTGCACCAG
ATACATTCCCGGCACAAAGCAGCCGGGGGCTGCTCTCGTGTGGTGTTCCCGACACCGGCGCCAGGACGAGGTGCGGCATT
CCCGACATGGGCGCCAGGAGTTGCAGAGCAACACACGACTAGAGTAGCATGGCAGCGTACGCCTGGAATAGCGACACACG
CCTGGTGATGGCCACTAGATATAGGTTTTATTATGATTTTTTTATTTTAATCAATGTAATAAAGGGACTTTTGGTGGCAA
TGTATATATATTTTTAATTCAAAAAATGTCCACAATCTGAAATGCATCCCGGCGCGTTGGGTGTACCGATAGACGGACGG
ACAAAGCAAACTTTGATGTCTTCGTTTGGATCGGTCGGTTAGAGTTGCCCTTACTCATACACCAGATCAGATGTACAAAA
TGTCTAAAATACTGCTTAGTGGCCGGACTTTGGTTCTTGATCTGGTTATAGAATTTCAAAAAAAAAAAATGTTCAGTTTT
TTTTTTAATGTTCATGCATAATCAGTCCAGTTGTTTCTATCAGATATATTTTTTGTGAACGGTCCTACTAAAATCTGCTC
TTAATTACTAGTACTTCTAAAAATCTATTTGCTACAAGTGTGGGCGTCTCCACGTGTGCGTGTGCTAGATCTGGAGCTTT
TTTCACATTGATTGCTAATGGCCGTTGAATGTGTAATGGACGCTGGATGTGTGTCCGCATGTTACAGCGTGACTGCCTGA
AGGCAAGTCACCTGATCCCTGTCCAAAACGGTATTGTATATTACTCAGATCAAGCTTGGGAATTTGATCAAGACTATTGT
CCTTAGCAAT----------------------------------------------------------------------
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---------------AGGAAGACTAAATGCTAGCACTGGATAAGACTATTGTTCCCAAATTAAACTACAAGGAAAATGGA
AACTAACGCATAATAACCGTTGGATCAACTTAATACTACAAACATCCATTCTGAGT------------------------
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-----------GTCATGTTTCTGTATGATACAAGAATAGATGATATTTTGCATCCTTGCAATAGTTCACCGCCAGAAGAG
GACCCCTACTAGCCTCCTTTTCGAAAAGAAGAAGAAGAGGACCCCTACGGCTTTCATGAGCATGGTACACTGCAATGCAT
TGAATGATAGTGGCAAGAAGGAAAAATTCATGCAAGATAA---GGCACAATTGCACAAGACATGTCCTACATAAAGGTGG
CCATTTCCACTACGAAGCACAAAACCATACACATCTAAGCCTCA------------------------------------
--------------------------------AAAAGATACATCATTCACCCTCGAGTCAGACAATGGCTCTTGTTGATG
ACGAGCTCAAGGCCAAGGCCGAGGTGTACTACGACGATGAGATTTGCAAGCAGTGCACCAGGCTCCTGCTCAAGGAAGCA
GGCCTCCCCAACGGCCTGCTTCCCCTGAAGGACATCGTGGAGTGCGGCTATGTCGAGGAGACTGGGTATGTGTGGCTCAA
ACAAAAGAAGAGGATAGACCACGTCTTCCAGAGCCTGGGAAGGGTGGTGTCTTATGGCACTGAGATCACTGCCTTCGCAG
AGAAGGGCAGGATCAGGAAGGTCAAAGGGATAAAGACCAGGGAGCTCATGGTGTGGCTCCCTGTGGAGGAGATCTCCCTC
GACGAACCAGCGACCGGTAAGCTCATCTGCAAGAGCATTGCCGGCTTTTCTAAGATCTTCCCTGCATCAGCTTTCCACAT
CCCAGAGAAGGAGAATGAGAAGGCCAACTGCGCCGGACCAAAACCAGTGGTCCTCATGGAGAGGGCAGCACGGGTTGTTA
AGAACAACTGATCGATCCTACAATCCTGCTCCTGTGTACGTACTAAAAATAATCGTCGAACTGGTGCTTTACTATTTGCT
TACTTATGTACTTCAAAAAAAAGGTGATAGCCCAAAGTTCTGCCTATATACAGCAGTGTATGGCTGTCCTGGTATTTATA
AACCTCCAAGCCAACCGCCCAAACTCCTTTTATATCTACCTCATAT----------------------------------
----------------------------------------------ATAGCTGTATGTTACTCATATGTACTACTACCAT
ATAATGGATGGATTTTATATGATATGCTTTCCCATT------------TTGGTCAAGATAATATACTGCTATGAGATCCT
TTGATTTCCCTTTCACCATCAAAGAAACTAATGACAGGGCATGAGATAAAAAGAACAAAATTTCACTGCATGTCGTGT--
-------------------------------------------------TAGATATTAGCAGGTACAAGTACATGCAGCA
AGTGTAATATGAAGGTTAACAGGATATTGGCAGGTACAAGTACAGCAAGTGGAATATGACTAGCTTCATTAGTTAGTCCA
AGGCAGGGTAA---------------------------------------------------------------------
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>SNPs
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------------------------------------------------------------------SS------------
----------------------------------S---------------------------------------------
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------------------------------------------------------------SS------------------
------------------------------------------------------------------------------S-
-------------------S----------SSSSSSS-------------------------------------------
-------------------------------------------------------------------S------------
-----------------------------------------------------------------------------S--
S-------------------------------------------------------------------------------
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-------------------------------------------------------------------------SSSSS--
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------------------------------S-------------------------------------------------
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--------------------------------------S-----------------------------------------
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------------------------------------SSSSSSSSSSSS--------------------------------
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----------------S-------------S-------------------------------------------------
----------------------------------------------------------------------------S---
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------S-------------------------------S-----------------------------------------
-----------------------------------SSS--SSSS------------------------------------
---------------------------------------------S---S-----------------------S------
------------------SS
>forward_2117
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-----------------ATATTGGGACGGAGGTCGGA-------------------------------------------
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>reverse_4007
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------GCGATGCTTTCCTTCCCAAA------------------------------------------------------
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