>input_sequence_77999
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------------------ATGAGGTCTCCCGTCCCCGCCATGCTCACCGCCCCATCAGCAGCGGCGGCCGTCGCCAAGCC
GCTCCCCGTGGCTCGCTCCAAC---ACGACGGCGGCGCTCCACGCGACGGC---CAGCAGCAGGCGGGACGTCATG----
--ACGGGCGTGGGAGCCGCGCTGCTGCTGGCCCTGTCGCCGCAGCGCGCGCGTGCGGCGTCGGACGACGAGTACCTGACG
GAGACGACGGAGGTGATCGGGAAGGTGCGGTCGACGATCAGCATGGACAAGACGGACCCCAAGGTGGCGGACGCGGTGAC
GGAGCTCCGGGAGATGTCCAACTCGTGGGTGGCCAAGTACCGGCGCGAGAAGGCGCTGCTGGGGCGGCAGTCGTTCCGGG
ACATGTACTCGGCGCTCAACGCCGTGTCCGGCCACTACATCAGCTTCGGCCCCACCGCGCCCATCCCCAACAAGCGCCGC
ATCCGCATCCTCGAGGAGATGGACGCCGTCGAGAAGTCGCTCAAGCGCGGCCGCTGA-----------------------
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>chr4B_1_TraesCS4B01G170800
CTGATGATTAGTTGCAGAGTCATTTAGCCTTGCATTGTTTGACAAATATTTTGTGATAATAATTGCAACATCTGAGAGTT
TTCAGTACGATAGTTCTTCCGTTTGTGTTTATTCTTTTTAGCTAAACATGGTGTTATTTGCTTTTTTTATTAGCTAAACA
TGGT---GTCCTTGGCTGCTTAGTGCCTTCCTATGATGAGTTGCAAACTTTATTGCCTACATTGTTCGATCAATCTTATG
AGAAGCTTCTG---------------------------------------------------------------------
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------------CAAGGACTGAGGATGAAAAAATGCACGAAAAATCCAATA-TTTTTTCTATATATTTTTATTATTTACA
TTCAGTTACTTGGCTTGT-GGCTTTTCTATCTATGATGAGCTGCACACGTTGAAAAAA----------------------
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--------TGCAATTTAGGATTTTCTTGTACCCCACATGTTTTAACCATACGCTAACCGATTGATTGATTTACCTTGATC
AGTGTGGTTCGTCAAGGTCAGTTGCTCCTATCAAGGCTGGATTCGTGGCGCAAGTTGGGCGTCGGAAGGCTGGAACTTAA
AAGTTGGGTAGTGCGCGGATGCTCTATCAACGTAATCCAGCAATTTGCCGATTTACAACAATCTTTATTGTCCTGTTTTC
ACTGTGCCTAGACCGCTTTGTGGATTTTGTTACTTCCTGTACTATGAATGCTGCTGGTGTGAATTTCTATTTATCTCAGA
GGATCCAAGTTTGCCTTTTTT------------------------TACTAGTTTTAGTCATCTGCATGAGAAGACTCTAC
CTGTCTGACTGAC-------------------------------TGAAGAGAGGTGTG----------------------
------------------GTTGTTCCGAAAGCCAACCACGCAGCCCCGTCCGTCGACGGGCGAGAAAAGGGAAATCCTGG
CAACTGAAACACAGCCTTACAAGAAAACAAGTCATGATAAGAGGATAAGCCGACGTATCGCCTCTTCCCTTTCTCCCTGA
CCCAAGCTACCAAACGATTCGACCTAAGCTCGTTGCCTCCCTTTCCACAACCTCCCC---TCCCCGCGCAAGCGCACTGA
GC----AGAAAGAAAGAGATGAGGTCTCCCGTCCCCGCCATGCTCACCGCCCCATCAGCAGCGGCGGCCGTCGCCAAGCC
GCTCCCCGTGGCTCGCTCCAAC---ACGACGGCGGCGCTCCACGCGACGGC---CAGCAGCAGGCGGGACGTCATG----
--ACGGGCGTGGGAGCCGCGCTGCTGCTGGCCCTGTCGCCGCAGCGCGCGCGTGCGGCGTCGGACGACGAGTACCTGACG
GAGACGACGGAGGTGATCGGGAAGGTGCGGTCGACGATCAGCATGGACAAGACGGACCCCAAGGTGGCGGACGCGGTGAC
GGAGCTCCGGGAGATGTCCAACTCGTGGGTGGCCAAGTACCGGCGCGAGAAGGCGCTGCTGGGGCGGCAGTCGTTCCGGG
ACATGTACTCGGCGCTCAACGCCGTGTCCGGCCACTACATCAGCTTCGGCCCCACCGCGCCCATCCCCAACAAGCGCCGC
ATCCGCATCCTCGAGGAGATGGACGCCGTCGAGAAGTCGCTCAAGCGCGGCCGCTGAAGACTTCCATCCACATCCACATC
CACATCCACATCCACACTAGCAGCAAAATGTCAAA------------CAGGATAGGGTGAGAACGTCGCGTTGCTTGTCC
CGTGGGTCATAAGCGCTCGGATTTTGAGTCTCGAGTTTACATCAATTGTTTGTACCACTTGTCTGAATCGGCTGA-TGAT
CTACATGGTGAGAATATTGTTTGGAGCATCCTTGATTTTGTGTATCAGCGTCTTCCTTGTTCCTC---------------
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----------------------CTTGCCTCAACGGTGCCCAGCACAGTCCAGGTGCTAAACAGAACGGCTTTGCTTTCTG
AATGGCTAGTGCTAGTGGTCTCAAGGGTTTTCATTGCCTCCCGCGGGGCTGCCTA--------TGGACTTAGGGTCATGG
AGTCGCGGTGGATTTCGGTCCTTACCAGTAGGAGGGCTTCATTTTTTGTTTTTAGATGTTGTTTTGAATTTAGGTAGGGT
TTTTGTCCTGCTTAGAAAATGAGACGGCGACGGCTTCCCGAAGATGTAATAAGCTTCTCACTGCCTAGGCCCCGTTCCGG
TGATGCTGCTAGTGTCGTCGGAGGGTGTGTGG-----------------ATCTCGCGGGAGTTGATCGACCTTTGTCTTC
GGTGGATCCGCTTGGATCCAATCTTCGTTCATCTACGTTCGTGTGTCTACAGGTTAGATCGTTTCGATCTACGCTTTTCT
TCATTGACGGCGGTTACTGTTCTAGTGCATAGGTCCTCCGAGGCCCTAGCACGACGACTTTCCGACTGTCTACTACAACA
AGATTTGCTGGCTTCGGTAATGGAGGGGTGATGACAGCAACACGCCTTCGGCTCGCTCCAGTGCTAGTGGATTCACAATG
ACAATCTAATTTAAGAAGCCAGTGCTAGTGGATTCACAATGATAATCTAATTTAAGAAAAGTCTACTAGTCTAGTGCTAG
CTGCTAGACTTTCCTTAAATAAGAATCACATTTCCAAGTCTTCGGAAAACATCCAATCACCCCCATCTCCAAAAAACCAA
GCCACTTGATAT
>chr4A_1
CTGATGATTAGTTGCAGAGGCATTTAGCCTTGCATTGTTTGAGAAATATTTTGTGATAATAATTGCAACATCTGAGGTTT
TTCAGTACGATAGTTCTTCTGTTTGTGTTTATTCTTTTTAGCTAAACATGGTGTTATTTGCGTTTTTTATTGCTTATTAA
AGTAGTCGTCCTTGGCTGCCTA-------CCTATGATGAGTTGCAAACTTTATTGCCTACATTGTTTGATCAATCTTATG
AGAAGCTTCTGTAACGTCTGAGGATGAAAAAATGCACTAAAAATCCTTTGATTATTTTTTCTCTATATTTTTGTTATTTA
CATTCGGTTACTTGTCTTGTGGGCTTTCCACCTATGATGAGTCGCAAACCTTATTGCCTACATTGTTTGATCAATCTTAT
GAGAAGCTTCCTCAAGGACAGAGGATGAAAAAATGCACTAAAAATCCAATGTTTTTTTCTATATATTTTTATTATTTACG
TTCAGTTACTTGGGTTGT-GGCTTTTCTACCTATGATGAGCTGCACACCTTATTCCCTATATCGTTTGACCAATCTTGTG
AGAA-----------------------------CCAGTGTATATTTTGTTTGGTCTAGAGTTCAGATGTCAGTTTGCACT
TCTGGGGTAGTGCTGATGATGAGTGAAGTTCTTGCCTACATTGTTTGACAAATAGTATGTGATGA---------------
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----------------------------------------------------TAATTGCTGCATCTGAGGCTTGTGCATT
ATTA---TATTATCATGGCTCTTTTGGCTCTCCTGTTTTTTGCCTGCTGCCTCTAGCTAAAGACTTACCGATGATGAGTT
GC-AAACCTTATTGCCTACATTGGTTGA---------------------------------------------------T
GAACCTGCTGCAATTTAGGATTTTCTTGTACCC-ACATGTTTTAACCATACGCTAACCCATCGATTTATTTTTCTTGATC
AGTGTGGTTCGTCAAGGTCAGTTGCTCCTATCAAGGCTGGATTCGTGGCGCAGGTTGGGCGTCGGAAGGCTGGAACTT--
AAGTTTGGTAGTGTGCG--------------------------------GATTTACAACAATCTTTATTGTCCTGTTTTC
ACTGTGCCTAGACCGCTTTGTGGATTTTGTTACTTCCTGTACTATGAATGCTGCTGGTGTGAATTTCTATTTATCTCAGA
GGATCTAAGTTTGGGGCCTATTGCCGGCTCCTTTGCCTTTGGTACTACTAGTTTTAGTTATCTGCATGAGATGAATCTAC
CTGTCTGACATGTTATTTCGCTCAAAGGACCCAGAAACATCGTATTAAGAGAGATGTGGTGGTATGGTACGGTAGCCATT
TGGGCGTTGTAATGACGTGTTGTTCCGAAATCCAACCACGCAGCCCCGTCG--------ACGAGAAAAGGAAAATCCTTG
CAACTGAAACACAGCCTTACATGTAAACAAGTCATGATAAGAGGATAAGCCGACGTGTCGCCTATT---------CCTGA
CCTAAGCTATCAAACGACTCAACCAAAGCTCGCTGCCTCCCTTTCCACAACCTCCAATCATCCCCGCGCAAGCGCAGTGA
GCAGAAAGAAAGAAAGAGATGAGGTCTCCCGTCCCCGCCATGCTCACCGCCCCATCAGCAGCGGCGGCCGTCGCCAAGCC
GCTCCCCGCGGCTCGCTCCAACACGACGGCGGCGGCGCTCCACGCGACGGCAGCCAGCAGCAGGCGGGACGTGATCGCGG
GCACGGGCGTGGGAGCGGCGCTGCTGCTGGCCCTGTGGCCGCAGCGCGCGCGTGCGGCGTCGGACGACGAGTACCTGGCG
GAGACGACGGAGGTGATCGGGAAGGTGCGGTCGACGATCAGCATGGACAAGACGGACCCCAAGGTGGCGGACGCGGTGAC
GGAGCTCCGGGAGATGTCCAACTCGTGGGTGGCCAAGTACCGGCGCGAGAAGGCGCTGCTGGGGCGGCAGTCGTTCCGGG
ACATGTACTCGGCGCTCAACGCCGTGTCCGGCCACTACATCAGCTTCGGCCCCACCGCGCCCATCCCCAACAAGCGCCGC
ATCCGCATCCTCGAGGAGATGGACGCCGTCGAGAAGTCGCTCAAGCGCGGCCGCTGAAGAGT---------------ACT
AGCAAAATGTACGTGCGTGC---------GTGCGTGCGTCAAACAGGCAGGATAGGATGAGAACGTCGCGTTGCTTGTCC
CGTGGGTCATAAGCGCTCCGATTTTGAGCCTCGAGTTT--ATCAATTGTTTGTACGACTTGTCTGAATCGGCTGAATGTT
CGACATGGTGAGAATATTGTTGGGGGCATCCTTGATTTTGTGTATCACCGTCTTCCTTGTTTCAATG-------------
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------------------------TGCCTCCACGGTGCCCAACACAGTTCAGGTGCTAA---------------------
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>chr4D_35
----------------------------------TTGTTTGACAAATATTTTGTGATAATAATTGCAACATCTGAGGTTT
TTCAGTACGAT------------TGTGTTTATTCTTTTTAGCTAAACACGGTGTTATTTGTGTTTTTTATTGCTTAGTA-
----GTCGTCCTTGGCTGCCTA-------CCTATGATGAGTTGCAAACTTTATTGCCTACATTGTTTGATCAATCTTATG
AGAAGCTTCTGCAACGTCTGAGGATGAAAAAATGCACTAAAAATTCATTGATTC--------------------------
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-----------------------------------------------------TTTTTCTATATATTTTTATTATTTACA
TTCGGTTACTTGGCTTCTGGGCTTTTCTACCTATGATGAGTTGCAAACCTTATTCCCTACATTGTTTGACCAATCTTGTG
AGAATTTATTTAACATCTGAGGATGGAACGATCCCAGTGTATATATTGTTTGGTCTAGAGTTCAGATGTTAGTTTGCATT
TCTGGGGTAGTGCTGATGATGAGTGAAGTTATTGCCTACATT-TTTGACAAATACTCCCTCCGTCCGGAAATACTTGTCA
TCAGAATGGAAAAAAGGGGATGTATCTAGATGTATTTTAATTCTAGATACATCTCTTTTAATCCATTTTGATGACAAGTA
TTTTCGGACGGAGGGAGTATAAGGCAAGCTTTTTGGGACGGAGGCAGTCTACTAATTGCAGCATCTGAGGCTTGTGCATT
ATTGTACTATTATCAAGGCTCTTTCGGCTCTTGTATTTTTCGCCTGCTGCCTCTAGCTAAAAACTCACCAATGATGAGTT
GCAAAACCTTATTGCCTACATTGTTTGAACCTCGTGAGAACTGATGCAACATCTGAGGATGAAAAAATCGCCCTTTACTT
GAACATGCTGCAATTTAGGATTTTCTTGTAGCC-ACAAGTTTTAACCATACACTAACCGATTGATTTATTTACCTTGATC
AGTGTGGTTCGTCAAGGTCAGTTGCTCCTATCAAGGCTGGATTCGTGGCGCAAGTTGGGCGTCGGAAGGCTGGAACTT--
AAGTTGGGTAGTGCGGGGATGCTCTATCAACGTAATCCAACAATTTGCCGATTTACAACAATCTTTATTGTCCTGTTTTC
ACTGTGCCTAGACCGATTTGTGGATTTTGTTACTTCCTGTACTATGAATGCTGATGGTGTGAATTTCTATTTATCTCAGA
GGATCTAAGTTTGCGGCGTATTGCCAACTCCTTTGCCTTTTTTACTAGTTTTATTAGTTATCTTCATGAGAAGATTCTAC
CTGTGACCCTCAAACG--------------------ACATCGTATGAAGAGAGATGTGGTAGTATGGTACGGTAGGCATT
TGGGCGTTGGAATGACGAGAA----------CCAACCACGCAGCCCCGTCGG----CGGACGAGAAAAGGAAAATCCTGG
CAACTGAAACACAGCCTTACAAGAAAACAAGTCATGATAAGAGGATAAGCCGACGTGTCGCCTCTTCCCTTTCTCACTGA
CCCAAGCTATCAAACGACTCGAGCTGAGCTCGCTGCCTCCCTTTCCACAACCTCCCC---TCCCCGCGCAAGCGCACTGA
AC----AGAAAGAAAGAGATGAGGTCTCCCGTCCCCGCCATGCTCACCGCCCCATCAGCAGCGGCGGCCGTCGCCAAGCC
GCTCCCCGCGGCTCGCTCCAAC---ACGACGGCGGCGCTTCACGCGACGGCAGCCAGCAGCAGGCGCGACGTCATCACGG
GCACGGGCGTGGGAGCGGCGCTGCTGCTGGCCCTGTGGCCGCAGCGTGCGCGTGCGGCGTCGGATGACGAGTACCTGACG
GAGACGACGGAGGTGATCGGGAAGGTGCGGTCGACGATCAGCATGGACAAGACGGACCCCAAGGTGGCGGACGCGGTGAC
GGAGCTGCGGGAGATGTCCAACTCGTGGGTGGCCAAGTACCGGCGCGAGAAGGCGCTGCTGGGGCGGCAGTCGTTCCGGG
ACATGTACTCGGCGCTCAACGCCGTGTCCGGCCACTACATCAGCTTCGGCCCCACCGCGCCCATCCCCAACAAGCGCCGC
ATCCGCATCCTCGAGGAGATGGACGCCGTCGAGAAGTCGCTCAAGCGCGGCCGCTGAAGGCTTCCATCCACGTCCACACT
AGCAAAATGTACGTGCGTGC---------GTCAAA------------CAGGATAGGGTGAGAACGTCGCGTTGCTTGTCC
CGTGGGTCATAAGCGCTCCGATTTTGAGCCTCGAGTTT--ATCAATTGTTTGTGCGACTTGTCT-AATCGGCTGA-TGAT
CGGCATGGTGAGAATATTGTTGGGGGCATCCTTGATTTTGTGTATCACCGTCTTCCTTGTTCCTCTTTTTTTGGCGCATC
AAAAGGGAGTTTTATTCATGAATCATAGGGTTACAATCGAGTGACCATAAGTCCTCACAACATGGAGGTCATTTACTCAT
CCACACTGCAGTACACGACTCTATTATGAGATCTCTTAATTTTATGTGGAATAAACTCCTTATCACCCATCAATGACTTA
ATCTCAGCTACCAAGTGCCCATAGGCCGATCGAGACAAGTTGTCACATGTAAGGATTGAAAGAGCCTCCGAGGAATCCGA
TTGGTCGATTCGTATGTTCCTCCTTGCCTCAACGGTGCCCAGCACAGTCCAGGTGCTAAACAGAACGACTTTGCTTTCTG
GATGGCTAGTGCTAGTGGTTTCAAGGGGTTTCATTGCCTCCCGCGGGGCTCCCTCGTCTCCCGTGGACTTAGGGCCATGG
AGGCGCGGTGGATTTTGGTCCTTACCAGTAGGAGGGCTCCGTTTTATGGTTTTTGATGTTGTTTTGAATTTAGGTAGGGT
TTGTGTCCTGCTTAGAAGACGAGACGACGACGGCTCCCCGAAGATGGAATAAGCTTTTCCCTGCCTAGCCCTCGTTCCGG
TGATGCTTCTAGTGTCGTCGGAGGGCGTGTGGAGGTTTGTCTCCGGTGAATCTCGCAGGATTCGGTCGACCTTTGTCTAC
TATGGATCTGCTTGGATCCGATCTTCATTCGTCTACGTTCGTGTGTCTATAGGTTAGATCGTTCCGATCTACGCTTCTCT
TCATCGACGGCGGTTACTGTTCTAGTGCATTGGTCCTTTAAGGCCGTAGCACGACGACTTCCCGACTGTCTACTACCATA
AGGTTTGTTGGCTTCGGTAATGGAGGGGTGATGACAGCAACACGCCTTCGGCTCGCTCCAGTGCTACTGGATTCACAATG
ACAATCTAATTTAAGAAA-------------------------------------------------AGTCTAGTGCTAG
CTGCTAGACTTTCCTTAAATTAGAATCACATTCCCATGTCTTTGGAGAACATCCAATTACCCCCATCTCCAAAAATCCAA
GTCACTCTATAT
>SNPs
-------------------S--------------------------------------------------------SS--
-------------------S-----------------------------------------S---------SSS--SSS-
S-SS---------------S--SSSSSSS-------------------------------------S-------------
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-------------------S------------------S-----------S-----------------------------
-----------------------------S------------------S--SSSSSSS----------------------
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---------------------------------S--------------------------------S-------------
------------------------------------------------------------------------------SS
---------------------------------------S----------------------------------------
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-----S--------SSSS-S--------------------------------------S---------------S-----
----------S-S----------------------------------------S--------------------------
------------------------------S-------------------S-SSSS---S----------S---------
--------------------------------------------------------S-----------------------
---------S-------S--------------S-----------------------------------------------
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--------S------------------------------------------------------------------S----
----------------S-------------------S-------------------------------------------
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-----------------------------------------------------------------------S------SS
SS--SSSSSSS-SSSSS-SSSSSSSSSSS---------------------------------------------------
------------------S---------S---------SS---------------S------------------------
-S-------------------S--S----------------------S--------------------------------
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-------------------------------------------------------------------S------------
S------------------S-------S----------------------S---S-------------------S-----
--S------------S----------------------S-S----S--S----S--------------------------
--S--------------S-S------S--------S----------S---------S--S--------S--S--------
-------S-----------------S------------------------------S---S-S-S-------------S-
SS------S----------S------S---S------------------S-------------S------------S---
----S-------------------------S------SSS-----S--------------S---------------S-S-
--S----S----------------------------------------------------------S-------------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
--------------------S-----------S---S-----S---S----------S-----------------S----
-S----SS----
>forward_183
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---TGGTGTCCTTGGCTGCTTAG---------------------------------------------------------
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>reverse_2326
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-----CCACATCCACACTAGCAGCA-------------------------------------------------------
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