>input_sequence_77995
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------------------------------------------------------ATGGACGGGCAGGGGAAGGAGGGCGG
CAGCGGCGGCGGGGGAGCGGGGAGCGAGTGCGACGTGGTGGGCAGGGCCTTCGTGGAGTACTACTACCAGACGTTCGACG
CCAACCGCGGCGCGCTAGCCACGCTCTACGGCGGCACCTCCGTCCTCTCCTTCGAGGGCCACCGCGTCGCCGGCGCCGCG
GAGATCGGCCTGAAGCTGGCGCAGCTGCCCTTCGAGCAATGCCGGCACTCCATCTGCACCATCGACTGCCAGCCCACGCC
CTCCTTCCCCGGCGGCATCCTCGTGTTCGTCAGTGGCAACCTCCAGCTCGCCGGCGAGGAGCACCAGCTCAGGTTCAGCC
AGGTAATTAAGAAACCCATCT-----CACTCACACGTCCTTTTGCGTTCTGAAATGGGGGTTTGATGATGATCTGGTCTG
TGTTTTCG-------CAGATGTTTCAGCTGGTCCCCAACGAGCAGGGAAGCTTCTTCGTGCAGAATGACATATTCCGGCT
CAACTACGGATAG-------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G354200
CCGCGGTGCCATCCGACTCCCCAAAGGACCCATCGACGGACAAGGCGACGGTACCCCGTAGTGGTGCCGGCCATTGAGCA
ACGGAGTATTTGCTTTTTGCTGCTGACCCTGGCCTGAGAGGTCTGAAACATTCATCTTGCCTTTGATTATCCCCTCCATG
CTAAAACGTCCAGCAAGCTTAACGGACTTGTAGTAACTATCGAGGAGCTCCCTATTATTTGCGCGGGATAACTGATTTAT
TTTTCGATCCCTGTGTTTGAATTCGTGAACAATTTATGATATTCGCGAAACATTTTTTACACTCACGCATTGACGGGGAT
TTGGGCTGCTCGCGCTTGGCATGCCCATAGAAAGGTAAGTTCGTTTTGACCGAAAGGAATCCGACCCAGTTTTCAGTTAC
TATGAACACAACTTTAGGTGCACATGTGCATTCCCTACAAAAAAAAA---CTCACATGTGCTATCCCACTTGGTTCGGTC
GCCGAAAGTGTCTGCGGCCACGCAAGGATGACATAAGGTCACATTTCACTCACCGAAAGCAAGCACCGGCCGGGTAAATC
CAGCTAGCGGTTGAGGTTTATATACCATAACCATATGTCTTCTCGAGCTCAACCTGACCGAGTGACTGGGAAAATTCATG
GACTATTGGGAATCGGTACTTTTCTTGCAACCATGGC--ATAGACTCGACTGAAAAAAAG--GTTAAGCTATCTAGTCTA
GAGAAAGGGGAAAACAGTTAACACACAAAGCTGATTCCTTGTGTGAGTGGGCGTGCGACATTGAGTTAACGACATGGCCT
C----CACGCACTGGGAGTGGGCGTGCGATCTACGCGATCCGGATAAAGGCAAAGCTAAGCAGGAGTTTTCATTCCGACT
GCACAAAATGGTTCACCCCATACGGCGCCGCGCCTACAAATAGCG---GCACGGAGTGCTCGTGCCCCATTGCAGCTGCG
GCAGTCCAGAGCACGAGAGGCCGAGCCACGCCAGCGAGTAGCTACGCGGAGCGCATGGACGGGCAGGGGAAGGAGGGCGG
CAGCGGCGGCGGGGGAGCGGGGAGCGAGTGCGACGTGGTGGGCAGGGCCTTCGTGGAGTACTACTACCAGACGTTCGACG
CCAACCGCGGCGCGCTAGCCACGCTCTACGGCGGCACCTCCGTCCTCTCCTTCGAGGGCCACCGCGTCGCCGGCGCCGCG
GAGATCGGCCTGAAGCTGGCGCAGCTGCCCTTCGAGCAATGCCGGCACTCCATCTGCACCATCGACTGCCAGCCCACGCC
CTCCTTCCCCGGCGGCATCCTCGTGTTCGTCAGTGGCAACCTCCAGCTCGCCGGCGAGGAGCACCAGCTCAGGTTCAGCC
AGGTAATTAAGAAACCCATCT-----CACTCACACGTCCTTTTGCGTTCTGAAATGGGGGTTTGATGATGATCTGGTCTG
TGTTTTCG-------CAGATGTTTCAGCTGGTCCCCAACGAGCAGGGAAGCTTCTTCGTGCAGAATGACATATTCCGGCT
CAACTACGGATAGCAGAC--------------------------------TAGCAGAGCAGGGTCGCGTGGGGTTGCCGA
AAGGATGTGGATGCTCGGATGCTTTGGCCCCGTGGATGGACGCCCTCGCTTTTTCGCTCTCATTCTTTTCTTTACATTAC
GTTCATGTAGCAGCATCC----TGAATAATAAAGTTGGTGGTGGCCGTGGTGTACGTGG---------AACTGAATTTTG
CAACTTTCCACTCCCTTGTCAGAAGAAAATGACTGCGCTAAACTTGGGCAAATTTTCATGTGCAATCAGATTACTGCCCC
TGCATTTTTTTATGAAAATAATGTTTGTACTCCCTATCTAACTTAATGTAAGATGTTTTAGTAGTTACAGAGGTTGTATT
CTAGATTCTCTGTTGTGTAGAGT----------------------------GTGCTTGTGGTTATGCCAATACAGGGCAC
C------------------------------TCGCAGAAAATGGCACTACACATGGATCCAGAGGCCAGAAGAGGTA---
---------------TAAAAAGAAATTGAGTCCATTGTGTTTCATTTATATGAATCAAGCCCAATAAATATTCTGATAAT
TT-----GTAGAATAAATCTAAAAGACCCACCTGGCTTCTTTTGTTTTGACATCAAAGACCCACTTGGCTTATTCATGCA
TGAAGAGAGTGAGTTAGGCAAGAGGTCCTATAACACGCATAGTGCGCTAGGTAAGGAACAATCACCATTTCATATTTAAC
ACATTAAGCACCAGTCAATATTCCGCATCAGCTGTATGTAGCACCCCTGCATGTTTCGAGAGCGCTGGT-----------
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-----------GCATTACAATTTTGGAAGCTCCTTCCCAGTGTAGTTTTCTTCCCTTTAACTGTTTTTTCTTTCGGTTTT
CTTTCCAGTTTTTATTTTTTAC----------TTTTTAGTTACTTCTTTTCCCCTTTTTTTCATTTTTGTTCTC--TTAA
ATTCTTGTACTTTTTCAAATGAGAAACGTTTTTCATTCAAATTTCTGAACTTTTTCAAATGAGTGTTTTCTTTAATTTCC
TGAACTTTTTTAAAAATCGACATTTTTTTAGAAATTTATGAAATTATTTCAAA
>chr3D_419
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------------------TGCGCATGTGCATTCCCTACCCAAAAAAAAAACTCACATGTGCTATCCCATTTGGTTCGGTC
GCCGAAAGTGTCTGCGGCCACGCAAGGATGACATAAGATCACATTTCACTCGCCGAAAGCAAGCACCGGCCGGGTAAATC
CAGCTAGCGGTTGAGGTTTATATACCATAACCATATGTCTTCTCGG---------------GTGACTGGGAAAATTCATA
GACTATTGGGAATCACTACTTTTCTTGCAACCATGACATATAGACTCGACTGAAAAAAAAAAGTTAAGCTATCTAAGGGA
AA-----------------AACACACAAAGCTGATTCCTTATGTGAGTGGGCGTGCGACATTCAGTTGACGACATGGCCT
CCACGCACGCACTGGGAGTGGGCGTGCGATCTACGCGACCGGGATAAAGGCAAAGCGAAGCAGGAGTTTCCATTCCGACT
GCACAAAATGGTTCACCCCATACGGCGCCGGGCCTACAAATAGCC---GCGCGGAGCGCTCGTGCT------------CG
GTAGCCCAGAGCACGAGAGATCGAGCCGCGCCGAGCTACATAACA-CGGAGCGCATGGACGGGCAGGGGAAGGAGGGCGG
C---------GGGGGAGCGGGGAGCGAGTGCGACGTGGTGGGCAGGGCCTTCGTGGAGTACTACTACCAGACGTTCGACG
CCAACCGCGGCGCGCTCGCCACGCTCTACGGCGGCACCTCCGTCCTGTCCTTCGAGGGCCACCGCGTGGCCGGCGCCGAG
GAGATCGGCCTGAAGCTGGCCCAGCTGCCCTTCGAGCAATGCCGACACTCCATCTGCACCATCGACTGCCAGCCCACGCC
GTCCTTCCCCGGCGGCATCCTCGTGTTCGTCAGCGGCAACCTCCAGCTCGCCGGCGAGGAGCACCAGCTCAGGTTCAGCC
AGGTAATTAAGAAACCCATTT-----CAGTCACACGTCCTTTTGCATTATGAGATGGGTTTTTGATGTGACTTGATCTGT
TTAT----------CCAGATGTTTCAACTGGTGCCCAACGAGCAGGGAAGCTTCTTCGTGCAGAATGACATATTCCGGCT
CAACTACGGATAGCAGAC--------------------------------TAGCAGAGCAGGGTCGCGTGGGGTTGCCGA
AAGAATGTGGATGCTTGGATGCTTTGGCCCCGTGGATGGACGCCCTTGCTTTTTCGCTCTCATTCTTTTCTTTACATTAT
GTTCATGTAGCGGCATCC----TGAATAATAAAGTTGGTGGTGGCCGTGGTGCACGCGG---------AACTGAATTTTG
CAATTTTCCACTCTCTTGTCAGAAGAAAATGACTGT--TAAATTTGGGGAAATTTTCATGTGCTGTGGGATTTCTGCCCC
TGCAATTGTTTACGAAAATAATGTTTGTACT-------------------------------------------------
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>chr3A_802
TGGGCGTGCC----------------------------------------------------------------------
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---------------------GCGTGCGATCTACGCGATCGGAATAAAGGCAAAGCGAAGCAGCAGTTTTCATTCCGACT
GCACAAAATCGTTCGCCCCATACGGCGCCGCGCCTACAAAAAGCCGGGGCGCGGAGCGCTCGTGCCCG-TTGCAGCTGCG
GAGGTCCAGAGCACGAGAGGTCGAGCCGCGCCGAGCTAATACA-A-CGGAGCGCATGGACGGGCAGGGGAAGGAGGGCGG
C---------GGGGGAGCGGGGAGCGAGTGCGACGTGGTTGGCAGGGCCTTCGTGGAGTACTACTACCAGACGTTCGACG
GCAACCGCGGCGCGCTCGCCGCGCTCTACGGCGGCACCTCCGTCCTGTCCTTCGAGGGCCACCGCGTGGCCGGCGCCGCG
GAGATCGGCCTGAAGCTGGCCCAGCTGCCCTTCGAGCAATGCCGGCACTCCATCTGCACCATCGACTGCCAGCCCACGCC
CTCCTTCCCCGGCGCCATCCTCGTGTTCGTCAGCGGCAACCTCCAGCTCGCCGGCGAGGAGCACCAGCTCAGGTTCAGCC
AGGTAATTAAGAAACCCATCTCTTCTCAGTCACGCCTCCTTTTGTGTTCTGGGATGTGTTTTGGATGTTGATCTGGGCAT
CTGGCCTGTGTTGCCCAGATGTTTCAGCTGGTGCCCAACGAGCAGGGAAGCTTCTTCGTGCAGAATGACATATTCCGGCT
CAACTACGGATGATACGCATGCTATGCGTATTCGAGAAAAAAACTACGGATAGCAGAGCGGGGTCGCGTGGGGTTGCCGA
AAGGATGTGGATGCTTGGATGCTTTGGCCCCGTGGATGGACGCCCTTGCTTTTTCGCGCTCATTCTTTTCTTTACATTAC
GTTCATGTAGCAGCATCCTGAATGAATAATAAAGTTGGTGGTGGCCGTGGTGTACGTGGTGTACTTTGAACTGAAATTTG
AAATTTTCCACTCTCTTGT-AGAAGAAAATGACTGCGTTAAACTTGGGAATGG-TTCGTGTGCTATCGAATTACTGCCCC
TGCATTTTTTTACAAGTC------------------------------------GTTTTAGTAGTTACAGAGGTTGTATT
CTAGATTCTCTGCTGTGTAGAACGTGCTTGTGATTCCACCGCAAAAAAAAAGTGCTTGCGGTTATGCCAATACAGTGCAC
CAGCGCAAAATAAACAGAAAAACAGTGCACCTCGCAGAAAATGGCACTACACAGAGATCCAGAGGCCAGAAGAGGTTCTG
CTGCATTTTATATATTAAAAAAAAGATGAGTC----------CATTTATATGAATCAAGCCCATTAAACATTCTGATAAT
TTGTACAGTAGAATAAATCTAAAAGACCCACTA---------------------------------GGCTTATTCATGCA
TGAAGAGAGTGAGTTAGGCAAGAGGTCC-ATAACACGCATAATGCGCTGGGTAAGGAACAATCGACATTTCATATTTAAC
ACATTAAGTGCCGGTCAACATTCCGCGTCAACTGTACGAAGCGCGCCTGCATGTTTCGCGAGCGTTGGTTTTTTTTTGAG
GGGTAAAGCCAAACTTTATTAATCAAAAACCACAGAGTGTGGGATACGAGTCAGGGTATGAGGCTGGCCAAGCCATACAT
GACGCCTCGGAGCTAAGGATAAAGCAAACTTTGCTAATCTATGTGTATCCATATTGGTTGCACGACCTTCAAAAGAAAAA
ATACAAGTTAAAAGGGAGGCTCTAGCTTTTATTTCAGATATAATCAGACCATATACTCCTTGATTCCCTCCATGGATATC
TCCTATGACTTGCTTCGAGTCTGAAGTGATCATAGCTTGCTGCACATTTAAGTCTTGAGCCAACGCAATAGCCTCTCTGC
AAGCAATCACCTTCAGGGTTGCTGGGTCCGCCACTCCCGCAATCACCAGTGCAGAACTTCCCAGATAAGTCCCGTTTCTG
TCACGACATACCGCTACCGCCGATCCTCCTCTTGAGGCCCTCACACCAGCATCAACTTGTATTTTAACAAAGTTCTCTGG
TGGGGCTTTTGGTCTCTGCGAGGCACTTGTTATCTGAATTGGCCCTGTTCTTCTAGGCTCCCCTTCTCTCACAACATCCA
ATTCACCAATGAAGTGTGTGATAAAATTATATATTGCATGTGGAGTTTGGAAAATCCCTTCATGGATTGCCTTGCGCCTC
GACGTCCAAATTGCCCAAAGTGTGACTGCAACTCTTATGAACTGTTCATGTTGGAGTGTTTCAATAAGGGTAAACAGCCA
GTTTCTTGCGTTTGTTTCTGTGTTAGCAACCAAAGTTGCACTTAAGTCCTCATCAACTAGCGCCCACGTGCACCTGGATA
CCGTGCAATCGAGGAGAGAATGGCGCCACGAGTCATGGGCGCCATAGAAGCCGCATGAGCTTGAAGTGGCCATGTGTCTG
TGCGCCCTAATATCCTCAGTGGGGATTGATTGTTTGGCGAGTCGCCACAAGCACATTCTCAGCTTTTCGGGTACCTCCGT
TTTCCACAAGGACTTCCAGGATCCTTCTTCATTACTTGACCTTGATGCCGCAGCCATCCCTTCCAACCAGGCCTCTCTTC
TTTGCCTAGTTGCATTACAATTTTGGAAGCTCCTTCCCGGTGCATTTTTCTTCCGTTTAATTGTTTTTTCTTTCAGTTTT
CTTTCCAGTTTTGATTGTCCTTTTCCTTTTTATTTTTAGTTACTTCTTTTCCTCTTCTTTTCATTTTTGTTGTTTTTTAA
ATTCTTGAACCTTTTCAA--------------------------------------------------------------
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>SNPs
SS-SS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS---S----------------SS----------------------------S-----------
-------------------------------------S-------------S----------------------------
---------------------------------------------SSSSSSSSSSSSSSSS------------------S
--------------SS-------------------S-----------------------S---------------SSSS-
S-SSSSSSSSSSSSSSSSS---------------------S---------------------S----S------------
----------------------------------------S---------------S-----------------------
--------------------------------------------S-----S-----S----------SS-----------
-S------------------S------S----SSSSSSS-S-SSSS----------------------------------
-SSSSSSSSS----------------------------------------------------------------------
----------------S-----------------------------S--------------------S------------
--------------------S-----------------------------------------------------------
---------------------------------S----------------------------------------------
----------------------------S-----------------------S-----SS-------S--------S-SS
-SS-SSS-------------------------S-----------------------------------------------
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---------------S------------------------------S---------------------------------
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---S---------S-----------------------S----------S--------------S---S------------
------------S------------------SSSSSSSSSSSSSSSSSSSSSSS--------------------------
------------S--------SS-----------------------------------S----------------S----
-----------------------------------------------------SS---------------------S---
---------------------S--SS------SSSSSSSSSS---------------------S----S-----------
-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
----------------------------S------------S------S--------------SS---------------
--------SS--S-----S-------S---S-----S-S---S-S-------------S-----S---------------
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--------------------------------------S---S-S---------S-----S-------------S-----
------------S---S-SSSS------------------------------S---S--------------S-S------
-------S--S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_109
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---------TTGCTTTTTGCTGCTGACCC---------------------------------------------------
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>reverse_1446
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-----TCGCAGATGTTTCAGCTGGT-------------------------------------------------------
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>forward_323
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---------------------------------------------------------------CACGCATTGACGGGGAT
TTG-----------------------------------------------------------------------------
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>reverse_2363
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------------------------------------------ACCCCTGCATGTTTCGAGAG------------------
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