>input_sequence_77994
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--ATGAAGAAGGGTGGCAGGAAAGCGAGCGGGTGCTTCTTCTGCCTCGGCGCGCCGATGCGCGCGCTGTCGAGAGCGTGC
GACCT---------------------------------------------------------------------------
----------------------------------------------CTACGTGAGCTGCATGTCCGGATGCGCGC-----
-----------GCC-GGATACCAGCGGGGGCGGTCGTGGGTGGACGCGGCCC----------------------------
---------------------------------------CGGCGGCTTC-------------------------------
---------------------------------------------------------------------GGCAGGCCGGC
CACGACCATGCACCTGCGGGCGAACTCGGATCGCGCCGACGACCTTGTCCGCGCCGCGTCGAAACAGCGCCGCGTCGCGC
CCGAGCCAGCGGACGTCGGGGCAGCGAAGAAGAAGGTGCACGTTAGCCTGGCAACTGCGGCCGTCCCGGCGCGGAGGAAG
CGCTCGGCGACGATGGTGACCATCGCTGAGGACGGGCCGTGCGAGTTTGGCGCCTGCGCGCTGAAACGGCCAGAGCAGAG
GAGTCGCGGCGCGGCGGTGGGCGGAGTGGCCGCGCGCGGCGGTGGTTTTGGTGCCATCAAGGTGGGGAACGAGGCATTCG
AGAGCCGAGCGTGA------------------------------------------------------------------
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----------------------------------------------------------------
>chr3B_1_TraesCS3B01G336500
CCGGAGCCTGGCCGGTGGGATGATCGCGACCACGCCATCTTCTTCATAAGGAGTTATAAGCAACATCATAATTTGGATGT
TTGGTGTTCATTTGCGGCGTGGCTGGGGTGGACGAAGGCCGGCGTGGCGGCCGACGGGAGGGCA-CTCGCGCGCCGGAGA
GCGGGTTGAGGAAGTGGAGGTCGGAGGCGGCTGAAGGAGGAAGGCGTTGCTGTGACAGAGATGCCTGGAGAAAGGAGAGC
CCTTCGATTGAAATGAACGGCGGATTGTACAGGTAACTGCACGGGTACAGTAATAACATAATTGTAGAGGAGCCGAACCC
GTGTCCGTGTCG--------------------------------------------------------------------
------------TCTGCTTTCTCTTTGGTCCTCCATATGCCAAAATTAAGGGGCAAGTTACAAACCAGAAAATATA----
A---AAT-TAAAAGGAAAAGTGATGGCAGCTTCTCTCAGGA-----GACATGGCTTACTA-----TAGCAGACAATCGAA
ACAGTAGACGTCGCTGTCTTCCAATGGTTTACGTGCGCTGAAACAAGCAACGGTAGAAATTTTTTATTG-----------
-----------TATATTTGCCGGCCGAATTGCAA-----CACACGCACGCAAAAAACGGCCAACATGCA-------TGCA
TGGTGGTATGCACATACGCAA-----------TGATTCACTGGATC-AACAGACGCAGCGCGTGCGAGTTGGCCAGCCGA
T-----CAACTTGTCGCTCGACCCTATCCTCCAAACCCGTGGACAAATTCCTACGAATCCATCAAAATAGTTACAGATTC
TGACCATTTCCCTCTTATCCGCC-GGTACAGAAACCTGGCGACCCCACGG----ATA--TGAACGTAAACGCAAAAAAGG
TCAACACCAAGCGGCTGTTTACGCGGACGG------------------AACG-------TCGATGGAATTAATGGAAGCG
TA----------TATATAT--CACGAGGTGGTCGAGGTGCCATTGTACACTCTCATAACGCAGCCAGCCATCGAGTTCCA
----AGGCAAGCTATAGTGCTCGATCTTGTGCTTTTCTCTGTGCGAAGTGA----ACACAGTTCCGGGACGCAGGCAGAA
GGATGAAGAAGGGTGGCAGGAAAGCGAGCGGGTGCTTCTTCTGCCTCGGCGCGCCGATGCGCGCGCTGTCGAGAGCGTGC
GACCT---------------------------------------------------------------------------
----------------------------------------------CTACGTGAGCTGCATGTCCGGATGCGCGC-----
-----------GCC-GGATACCAGCGGGGGCGGTCGTGGGTGGACGCGGCCC----------------------------
---------------------------------------CGGCGGCTTC-------------------------------
---------------------------------------------------------------------GGCAGGCCGGC
CACGACCATGCACCTGCGGGCGAACTCGGATCGCGCCGACGACCTTGTCCGCGCCGCGTCGAAACAGCGCCGCGTCGCGC
CCGAGCCAGCGGACGTCGGGGCAGCGAAGAAGAAGGTGCACGTTAGCCTGGCAACTGCGGCCGTCCCGGCGCGGAGGAAG
CGCTCGGCGACGATGGTGACCATCGCTGAGGACGGGCCGTGCGAGTTTGGCGCCTGCGCGCTGAAACGGCCAGAGCAGAG
GAGTCGCGGCGCGGCGGTGGGCGGAGTGGCCGCGCGCGGCGGTGGTTTTGGTGCCATCAAGGTGGGGAACGAGGCATTCG
AGAGCCGAGCGTGA------CGCGTGCGTGATAACACTACTAGCTTCTAGACGTCCATTGATT-----------------
-----CCACCGGTTTTTTCA----TTGATTTCTTCTTGTTGTTTATAAACAGTTCGATAACGATCGCAAATCAGCAAATG
GAACTGTCCGCGATGGCGCGACGGTTTGGAAATTGGAAATGACCTTATTTGAACGTGTTTTTAA----------------
--------------------------------------------------------------------------------
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------------------------------------TATG-------AAAAAACAGAAAATCTACAATACGAACGTTCTT
GTTATGGTTTTCCAGCGTGATTTAATGCCTACCATTGGATTTCGCCCATCGAAGTTGCGCATACAGGGATGTGATTGTTG
CATGACATGATGAAAGAAAGGAAAAAGTCTAAAACAAACTTTAAAGTTATAGACGAAAGCTAAATCAAATCCTGAACTTG
CAATTTCGGAAATCAGCACATCGAACTCTTTAATCCCGATGTATTTTAAACCCTGATAGTGTTTCCAAACAGAAATTGTC
GGCGTGGCAGATGGAATCCCGGGATTGTTGACTGCGGTCGCTACTGGGCTGGCCCAACATACACGAAATTCTTTTTATTT
TTGCTTTTTCGTAACAGGCGAAGTAATAAAAATCTATATCTATACTCTATATACTACTATTAAAAGAGCAAACATGAATT
AGTCTAAACCCACCAAACTTAGTGTACACAAGAAAATTAGCACCCTTGGATGTAACCCACTTAATTATATCTAAGAGCCC
GTATTACTTCGGTGGTTTGTCATCGAAACGAATGGACGAGATTAAATATTCTGCCAGTCTGCCACCAACGTACGGTCCCA
CGTATGCCCACTAATCCACGACGTCGTACCCCCAAACCAACATCACATCTCAGTTGAGAAAAAAAACATCACGTCTCCGA
CTCCACCCCTCCCCCAGCCACCACAGAACTCCTCCATGTTCCCATCGCCGCCGCGCGTCGCTCCTCCTCTCCCCTGCTAC
CCCCGTCGTGAGGAACCAACCTCCGAAAGCAACCAGAGCGGCAAGCGGCGGAAGAATGGAGAGAT---------------
----------------------------------------------------------------
>chr5B_1
CCGGAGCCTGGCCGGTGGGATCATCGCGGCCACGCCATCTTCTTCATAAGGAGTCATAAGCAGCATCATAATTTGGATGT
TTGGTGTTCATTTGTGGCGTGGCTGGGGTGGACGAAGGCCGGCGTGGCGGCCGACAGGAGGGCACCTCGCGCGCCGGTGA
GAGGGTTGAGAAAGTGGAGGTCGGAGGCGGCTGAAGGAGGAAGGCGTCGCTGTGACAGAGATACCTGGAGAAAGGAGAGC
CCTTCGATTGAAATGAACGGCAGATTGTACAGGTAACTGCACGGGTACAGTAATAACATAACTGTAGAGGAGCCGAACCC
CCATCGATGGGGGTTCGGCTCCTCTACAGTTATGTTATTACTGTACCCGTGCAGTTACTTCTACAATCTACCGTTCATTT
CAATCGAAGGGCTCTCCTTTCTCTCCATCCTTCTCGTC------------------------------------------
----------------ACAGTGACGTCTTCTTCATGAGGAAGCGAGCGTTC-----------------------------
----------TTGCTGTCCGCCGGCGTTCACCGTC---------------------------------------------
--------------------------------------------------------------------------------
------------------CAC-----------TGATGAACTCGAAG-AACTCGGCCTTGGCGTGCT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CCAGCTGGGGCTTCTATTTGTATCAATAGCTAGTTATGTACGTCCTCGTCTAATTC
TTGCGATAAAATGTGCGCCTGCACGTACAGATACAATTGTGCATGCGGATCTCTACGATGCTAGTATATGCATTGCGCTT
GGCCGTTCGGGATTTGATAATTTGCGCAGCTAGCCGTTGCACCGAGCGACGAGAGGTTCATGAGGTATCTGCTGTACGCC
ATCGATATGGAGCACGCACGCCGCGAGCCACGGTAGCAGGGTGACGCGACCAAAGCAGCGCCGACCATGATAAAGGAGGA
CCAAACGGCAGCACAACTGAAGCAACGTCCACCTCGTGTCGGCGGCTTCGGTCAATGACGATGAGGGACAGTGGCTGGCA
GGTGAGCATGCCAGCGTAGCCGCCCTAAGGGCCTGACTCCGGCGCCACGGTCTGCTTCTTCGGCGCCTGGGCAGCGCGGA
CATGAGTATGACCTTCTCGTGGAGCTCGTA------------------CCGG----------------------------
--------------------------------------------AGCCTGGCCGGTGGGATCATCGCGGCCACGCCATCT
TCTTCATAAGGAGTCATAAGCAGCATCATAATTTGGATGTTTGGTGTTCATTTGCGGCGT-------GGCTAGGGTGGAC
GAAGGCCGGCGTGGCGGCCGACAGGAG-----------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
GCACCTCGCGCGCCGGTGAGAGGGTTGAGAAAGTGGAGGTCGGAGGCGGCTGAAGGAGGAAGGCGTCGCTGTGACAGAGA
TAC-----------------------------------------------------------------------------
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------------------------------------------------CGGGAGAAAGGAGAGCCCTTCGATTGAAATGA
ACGGCAGATTGTACAGGTAAATGCACGGGTACAGTAATAACATAACTGTAGAGGAGCCGAACCC
>chr3D_320
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GTGTCCGGGTCG--------------------------------------------------------------------
------------TCTGCTTTCTCTTTGGTCCTCTATATGCCAAAATTAAGGGGCAAGTTACCCACCAGAAAATATA----
A---AAT-AAAAAGGAAAAGTGATGGCAGCTTCTATCAGGA-----GACATGGCTTACTA-----TAGCAGACATTCGAA
ACAGTAGACGTCGCTGTCTTCCAATGGTTTACGTGCG-TGAAACGAGCAACGGTAGAAAAGTTTTATTG-----------
-----------TACATTTGCCGGCCGAATTGCAA-----CACACGCACGCAAAAAACGGCCAACATGCA-------TGCA
TGGTGGTATGCACATACGCAAATACGCA---ATGATTCACTGGATC-AACAGATGCAGCGCGTGCGAGTTGGCCAGCCGA
T-----CAACTTGTCGCTCGACCCTATCCTCCAAACCCATGGACAAATTCCCGCGAATCCATCAAAATAATTGCCGATTC
TGACCATTTCCCTCTTATCCGCC-GCTACAGAAACCTGCCGACCCCACGG----ATA--TGAACGTGAACGC-AAAAAGG
TCAACACCAAGCGGCAGTTTACGCGGACGG------------------AA----------------------TGGAAGCG
TG----------TATATAT--CACGAGGTGATCGAGGTGCCATTGTACACTCTCACAACGCAGCCAGCCATCGAGTTCAA
AGGCAGGCAATCTACAGCGCTCGATCTTGTG--TTTCTCTGCGAGAAGCCA----ACGCAGCTCTGGCACGCAGGCAGAA
GGATGAAGAAGGGTGGCGGGAAAACCAGCGGGTGCTTCTTCTGCCTCGGCGCGCCGATGCGCGCGCTGTCCAGAGCGTGC
GACCT---------------------------------------------------------------------------
----------------------------------------------CTACGTGAGCTGCATGTCCGGATGCGCGC-----
-----------GCC-GCATGCCAGCGGGGGCGGTCGTGGGTGGCCGCGGCCC----------------------------
---------------------------------------CGGCGGCTTC-------------------------------
---------------------------------------------------------------------GGCGGGCCGGC
CACGACCATGCACCTGCGGGCGAGCTCGGACCGCGCCGATGATCTTGTCCGCGCAGCGTCGAAACAGCGCCGCGTCGCGC
CCGAGCCGGCGGACATCGGGGCAGCGGAGAAGAAGGTCCACGTTAGCCTGGCGCCTGCGGCCGTCCCGGCGCGGAGGAAG
CGCCCGGCGACGATGGTGACCATCGCTGAGGACGGGCCGTGCGAGTTCCGCGCCTGCCCGCTGAAACGGCCAGAGCAGAG
GACTCGCGGCGCGGCGGTGGGCGGACTGGCCGCGCGCGGCGGTGGTTTTGGTGCCATCAAGGTGGGGAGCGAAGCCTTCG
AGAGCCGAGCGTGA------CGCGTGCGTGATAA---TAC----------------------T-----------------
-----CCACCAGTTTTTTCA----TTGATTTCTTCTTGTTGTC--TAAACAGTTCGATAACGATCGCAAATCAGCAAATG
GACCTGTCCGCGATGGCGCGACGGTTTGGAAATTAGAAATGACCTTATTTGAACATGTTTTTCTCTATCTCTATCTATAC
TATTTTTTTTAGGTATCTTTATCCACAATCGATCAACTTAATTTACTTATCTTCTGAACCAATTTCATTTTAATTTACTT
ACCAAACTTCTAATCATATAAGGTAATTCACGGGCAGAATTTAAAAAACATTCATTTACACAATCGCATTATTATGGACA
GTTAAATCACAAACTAACATATACTAGAATATTTATATTCCGTTGTAACACACGATCATTGTTCTAGTAATCTGAAAAGA
CATAAATCCTACGCAAGGAACGTTCTCGGTATGGTTTTCCAGCGTGATTTAATGCCTACCATTGGATTTGGCCCGTGACG
TTGTGCATACTGGGATGTGATTGTTGCATGACATGGTGAAAGAAACTCCGAGCCAACATTCCGTGGTGCAGCCCTCACGC
CGTAAGCAAGCGTTTTGTAGGATGTGCAGCTGCATCGGCCACGATAACGAAGTTTTTTTTTTCTTTTGAGAAATCGACCG
CGAAGATGGGGTGACCGCGTTGGGGAAGCTCCCTGGGCGGCGGCGGGAACTAACCAGGCCTTGGGCTCCAAATGGGCCTC
AATGTGAGCGGCGGCGGTTGTGATGTTGCACATCTTTTGAGTGGACAGGTAGAGATGAAATTTTTGTATAAAAAGATCTC
TACTACTTAAAAAGAATGTAAGGTTTCCATTTCAGCTTTCTTTTCACCACCCTTTCGTCATACCTTCCTATTTCTATCTA
TCTACTACTTAAAAAGAACGTAAGGTTTTCATTTCACCTTTCTTTCCATCACCCCTTCGTCAAACCTTCATATATGATAA
TCAATCAACTTAATTTACTTACCTTCTGAACCAATTTAATTTTAATTTACTTATCAAACTTCTGATCAAAATATAAGATA
ATTTACGGGGAAAATTTGATGAACATTTATTTACACAATCACATTATTATGACAGTTAAATCACAAGCTAACGTACTAGA
ATATTTATATCCCGTTGCAATGCACGAGCATTGTTCTAGTAATATGAAAAAG-CAGAAATTCTACACAACGAACGTTCTC
TATACGCTTTTCCAGTGTGATTTAGTGCCTACCATTGGATTTGGCCCGTGGATGTTGCACATACAGGGATGTGATTGTTG
CATGACATGGTGAAAGAAA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr3A_320
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
GTGTCTTTGTCG--------------------------------------------------------------------
------------TCCGCTTTTTCTTTGGCCCTCTATATGCCAAAATTAAGGGGCAAGTTACCAACCAGAAAATAAA----
A---AATAAAAAAGGAAAAGTGATGGCAGCTTCTCTCAGGA-----GACATGGCTTACTA-----TAGCAGACAATAGAA
ACAGTAGAGGTCGCCGTCTTCCTATGGTTTACGTGCGCTGAAACAAGCAACGGTAGAAAAGTTTTATTG-----------
-----------TATATTTGCCGGCCGAATTGCAAACACGCACACGCACGCAAAAAACGGCTAACATGCA-------TCTA
CGGTATGTAGT------GCACGTATGCAATGATGATTCACTGGATC-AACAGACGCAGCGCGTGCGAGTTGGCCAGCCGA
T-TATACCACCTGTTGCTCGACCCTATCCTCCAAACCCGTGGACAAATTCCTGCGAATCCATCAAAATAATTGCAGATTC
TGACCATTTCCCTCTTATCCGCC-GGTACAGAAACCTGCCGACCCCACGG----ATATATGAACGTAAACGC-AAGAAGG
TCAACACCAAGCGGCGGTTTACGCGGGCGGAACGGGCAACGTCGACCTAA----------------------TGGAAGCG
TA----------TATATAT--CACGAGGTGATCGAGGTGCCATTGTACACTCTCATAACGCAGTCGGCCATA-AGTTCAA
----AGGCAAGCTACAGTGCTCGATCTTGTG--TTTCTCTGTGCGAAGCCA-----------------ACGCAGGCACAA
GGATGAAGAAGGGTGGCGGGAAAACGAGCGGGTGCTTCTTCTGCCTCGGCGCGCCGATGCGCGCGCTGTCCAGGGCGTGC
GACCT---------------------------------------------------------------------------
----------------------------------------------CTACGTGGGCTGCATGTCCGGATGCGCGC-----
-----------GCC-GGATGCCGGCGGGGGCGGTCATGGGCGGCC-----------------------------------
-----------------------------------------GCGGCTTC-------------------------------
---------------------------------------------------------------------GGCAGGTCGGC
CACGACCATGCACCTGCGGAAGAGCTCGGACCGCGCCGACGACCTTGTCCGCGCCGCATCCAGACAGCGCCGCGTCGCGC
CCGAGCCAGGGGTCGTCGGGGCAGCGAAGAAGAAGGTCCACCTTAGCCAGGCCCCGGCGGCTGTCCCGACGGGGAGGAAG
GGCCCGG---CGATGGTGACCATCACTGAGGACGGGCCGTGCGAGTTCGGCGCCTGCCCGCTGAAACGTCCAGAGCAGAG
GAGTCGCGGCGCGGCGGCGGGCGGACTGGCCGCGCGCGGCGGTGGTTTTGGTGCCATCAAGGTGGGGGGCGAGGCATTCG
AGAGCCGAGCGTGAGCGTGACGCGTGCGTGATAA---TACTAGCTTCTAGACGTCCATTGATT-----------------
-----CCACCAGTTTTTTCA----TTGATTTCTTCTTGTTGTGTATAAACAGTTCGATAACGATCGCAAATCAGCAAATG
GAACTGTCCGCAATGGCGCGACGGTTTGGAAATTGGAAATGACCTTATTTGTACGTGTTTTTAA----------------
--------------------------------------------------------------------------------
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------------------------------------TACTACTATGAAAGAA-CAGAAATTCTACACAACGAACGTT---
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr3A_320
--------------------------------------------------------------------------------
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GTGTCCGTGTCT--------------------------------------------------------------------
------------TCTGCTTTCTCTTTGGTCCTCTGTATGCCAAAATCAAGGGGCAAGTGGCCAATCAGAAAACATATATA
AAATAAAATAAAAGGAACAGTGACGGTAGCTTCCCTCAGGA-----GACATGGTTTACCAGGAGCTACCAGACAATCGAG
ACAGTAGAGGTTGGTGTCTTCCAATGGCTTACGTGCGCTGAAACAAGCAACAGTAGAAAAGTTTTATTG-----------
-----------TATATTTACCGGCCGAATTGCAA-----GA-ACGCACGCAAAGAACGGCTAACATGCA-------TA--
----------T------GCACATACGCA---ATGATTCGCTGGATC-AACAGACGCAGCGCGTGCGAGTTGGCCAGCCGA
TATCCTCCA-----------------------AAACCCGTGGACAAATTCCTGCGAATCCATCAAAATACTCGCCGATTC
CGACCGTTTCCCTCTTATCCGCCCGGTACAGAAATCCGCCGACCCCACGG----AT--ATGAACGCCAGAGC-AAAAAGG
TCAACACCAAGCGGCGGTTCACGCGGACCGAACGGGCAACGTCCACGGAA----------------------TGGAAGCG
TA----------TATATATACCACGAGGTGATGGAGGTGCCATTGTACACTCTCATAACGCAGCCAGCCATCGAGTGCAA
AGGCAA----------------GATCTTGTG--TTTCACGT---------------------------ACGCATACACAA
GGATGAAGAAGGGTGGCGGGAAAGCCAGCGGGTGCTTCTTCTGCCTCGGCGCGCCGATACGCGCGCTGTCGAGGGCGTGT
GACCT---------------------------------------------------------------------------
----------------------------------------------CTACGTGAACTGCATGTCCGGATGCGCGC-----
-----------GCC-GCATGCCAGCGGGGGCGGTCGTGGGTGGTC-----------------------------------
-----------------------------------------GCGGCTTC-------------------------------
---------------------------------------------------------------------GGCGGGCCGGC
CACGTCCATGCACCTGCGGGCGAGCTCGGATCGTTCCGACGGCCTTGTCCGTGCCGCGTCGAAACAGCGCCGCGTCGCGC
CCGAGCCAGCGGAGGTAGGGGCAGCGAAGAAGACGGTCCACCTTAGCCAGGCGCCGGCGGCCGTCCCGGCACGGAGGAAG
GGCCCGGCGA---TGGTGACCATCGACGAGGACGCGCCGTGCGAGTTTGGCGCATGCCCGCTGAAACGTCCAGAGCAGAG
GAGTCGCGGCGCGGCGGTGGGCGGACTGGCCGCGCGCGGCGGTGGTTTTGGCGCCATCAAGGTGGGGGGCGAGGCATTCG
AGAGCCGACCGTGA------CGCGTGCGTACAACAC--------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr7D_320
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
GTGTCCGTGTCT--------------------------------------------------------------------
------------TGTGCTTTCTCTTTGGTCCTCTCTATGCCAAAATCAAGGGGCAAGTGGCCAATCAGATATTTTAATTT
A---AAAACAAAAGGAAAAGAGATGGTAGCTTCCCTCAGGACAGGAGACATGGTTTAC-------TAGCAGACAATCGAA
ACAGTAGAGGTTGCTGTCTT---ATGGTATACGTGCGCTGAAACAAGCAACGGTAGAAAAGTTTTATTGGAGTACTAGTA
CTAAATAAGGATATATTTGCCGGTAGAATTGCAA-----CAGA--CACGCAAAAAACGGCTAACATGCACGTACG-----
--------------------------CAATGATGATTCACTGGATC-AACAGAAGCAGCGCGTGAGAGTTGGCCAGCCGA
T-----CAACTTGTAGCTCGACCCTATCCTCCAAACCCGTGGACAAATTCCTGCGAATCCATCAAAATTATTGCCGATTC
TGACCATTTCCCTCTTATCCGCC-GGCACAGAAACCTGCCGACCCCACGG----AT--ATGAACGTGAACGC-AAAAACG
TCAACACCAAGCGGCAGTTCACGCGGACGG------------------AACGGGCAACGTCGACGGAATTAATGGAAGCG
TATATATATATATATATAT--CACGAGGTGATCGAGGTGCCATTGTACACTCTCACAACGCAGCCAGCCATCGAGTTTAA
AGGCAGGCAATCTACAGCGCTCGATCTTGTG--TTTCTCTGCAAGAAGCCA----ACGCAGCTCCGGCACGCAGGCAGAA
GGATGAAGAAGGGTGGCGGGAAAACCAGCGGGTGCTTCTTCTGCCTCGGCGCGCCGATGCGCGCGCTGTCCAGAGCGTGC
GACCT---------------------------------------------------------------------------
----------------------------------------------CTACGTGAGCTGCATGTCCGGATGCGCGC-----
-----------GCCCGCATGCCAGCGGGGGCGGTCGTGGGTGGCCGCGGCCC----------------------------
---------------------------------------CGGCGGCTTC-------------------------------
---------------------------------------------------------------------GGCGGGCCGGC
CACGACCATGCACCTGCGGGCGAGCTCGGA------------------CCGCGCCGCGTCGAAACAGCGCCGCGTCGCGC
CCGAGCCGGCGGACGTCGGGGCAGCGAAGAAGAAGGTCCACCTTAGCCAGGCACCGGCGGCCGTCCCGGCGCGGAGGAAG
CGCCCGG---CGATGGTCACCATCGCCGAGGACGGGCCGTGCGAGTTCGGCGCCTGCGCGCTGAAACGGCCAGAGCAGAC
GAGTCGCGGCGCGGCGGTGGGCGGACTGGCCGCTCGCGGCGGTGGTTTTGGTGCCATCAAGGTCGGGAGCGAGGCCTTCG
TGAGCCGAGCGTGA------CGCGTGCGTGATAA---TAC----------------------TAGCTTCTAGACTTCCAT
TGATTCCACCAGTTTTTTTCCCCCTTGATTTCTTCTTGTTGTGTATAAACAGTTTGATAACGATCGCAAATCAGCAAATG
GAACT--------TGGCGCGACGGCTTGGAAATTGGAAATGACCTTATTTGAACGTGTTTTTAA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------TATG-------AAAAA-CAAAAATTCTACACAACGAACGTTCTC
GGTATG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>chr3D_531
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TATATTTGCCGGTAGAATTGTAA-----CAGA--CACGCAAAAAACGGCTAACATGCACGTATGG-A--
----------T------GCACATACGCAATGAT---TTGCTGGATCAAACATACGCAGCGCGTGCGAGTTGGCCAGCCGA
T-----CAACTTGTCGCTCAGCCCTATCCTCCAAAG-------------------------TCAAAATAATTGCCGATTC
TGACCATTTCCCTCTTATCCGCC-GGTACATAAATCTGCGGCCCCACCGGATATAT--ATGAACGCCAGGGC-AAAAAGG
TCAACACCAAGCGGCGGTGTACGCGAACGG------------------AACGGGCAACGTCGACGG-ATTAGTGGAAGCG
TA----------TATATAT--CACGAGGTGATCGAGGTGCCATTGTACACTCTCAT---------------CGAGTTCAA
----AGGCAAGCTATAGCTCTCGATCTTGTG--TTTCTCTGTGAGAAGCCAGCCAACACAGCTCCGGCACGCAGACAGAA
GGATGAAGAAGGGTGGCAGGAAAACGAGCGGGTGCTTCTTCTGCCTCGGCGCGCCGATGCGCGCGCTGTCGAGGGCGTGC
GACCT---------------------------------------------------------------------------
----------------------------------------------CTACGTGAGCGGCATGTCCGGATGCGCGC-----
-----------G-CCGGATGCCGGCGGGGGCTGTCGTGGGTGGTCGCGGCTCGAA-------------------------
------------------------------------------CGGCTTC-------------------------------
---------------------------------------------------------------------GGCGGGCCGGC
CACGACCATGCACATGCGGGCGAGCTCGGACCGCGCGGACGACCTTGTCCGCGCCGCGTCGAAACAGCGCCGCGTCGCGC
CCGAGCCGGCGGACGTCGGGGCAGCGAAGAAGAAGGTCCACCTTAGCCAGTCGCCGGCGGCCGTCCCGGAGCGCAGGAAG
CGCCCGGTGACGATGGTCACCATCGCTGAGGACGGGCCGTGCGAGTTCGGCGCCTGTCCGCTGAAACGGCCAGAGCAGAG
GAGTCGCGGCGCGGCGGTGGGCGGACTGGCCGCGCGCGGCGGTGGTTTTGGTGCCATCAAGGTGGGGAGCAAGGCATTCG
AGAGCCGACCATGA------CGCGTGCGT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr3B_560
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CACGCAAAAAACGGCTAACATGCACGTACGGTA--
----------T------GCACATACGCA---ATGATTTGCTGGATC-AGCAGACCCAGCGCGTGCGAGTTGGCCAGCCGA
TTTATACCACCTGTTGCTCCGCCCTATCCTCCAAACCCGTGGACAAATTCCTGCGAATCCATCAAAATAATTGCCGATTC
TGACCATTTCCCTCTTATCCGCC-GGTACAGAAATCTGCCGACCCCACGG----AT--ATGAACGCCAACGC-AAAAAGG
TCAACACCAAGCGGCGGTTTACGCGGACGG------------------AACGGGCAACGTCGACGA----AATGGAAGCG
TA----------TATATTT--CACGAGGTGATCGAGTTGCCATTGTACACTCTCATAACGCAGCCGGCCATCGAGTTTAA
AG--------------------GATCTTGTG--TTTCTCTGCGAGAAGCCA----ACGCAGCTCCGGCACGCAGACAGAA
GGATGAAGAAGGGTGGCAGGAAAACGAGCAGGTGCTTCTTCTGCCTCGGCGCGCCGATTCGCGCGCTGTCGAGGGCGTGC
GACCT---------------------------------------------------------------------------
----------------------------------------------CTACGTGAGCTGCATGTCCGGCTGCGCGC-----
-----------GCC-GCATGCCGGCGGGGGCTGTGGTGGGTGGCC-----------------------------------
-----------------------------------------GCGGCTTC-------------------------------
---------------------------------------------------------------------GGCGGGCCGGC
CACGACCATGCACCTGCGGGCGAGCTCGGATCGCGCCGACGACCCTGTCCGTGCCGCGTCGAAACAGCGCCGCGTCGCGC
CCGAGCCGGTGGACGTCGGGGCAGCGAAGAGGAAGGTCCACCTTAGCCAGGCGCCGGCGGCCGTCCTGTCGCGGAGGAAG
CCCCCGGCGACGATGGTGACCATCGCTGAGGACGGGCCGTGCGAGTTCGGCGCCTGCCCGCTGAAACGTCCAGAGCAGAG
GAGTCGCGGCGCGGCGGTGGGCGGACTGGCCGCGCGCGGCGGTGGTTTTGGTGCCATCAAGGTGGGGAGCAAGGCATTCG
AGAGCCGACCGTGA------CGCGTGCGT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>SNPs
---------------------S------S-------------------------S-------S-----------------
--------------S----------------------------------------S---------------------S--
-S--------S------------------------------------S--------------S-----------------
---------------------S---------------------------------------S------------------
--------------------------------------------------------------------------------
---------------------------------S---------------------------S------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------SS-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S----------------S--S-------
--------------------------------------S---------------------------------S-------
---------------S-----------------------------------------------S----------------
------------------------------S-----------------------------------------------S-
-------------------------------SS---------------SS-----------S-----S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
-------------------------------------S---------------S--------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------S-----------
----------------------------------SSS-------------------------------------------
----------S-------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S------S------SS-----------S
-S----S--------S--------S-----------------S----S-S--S-----S---------------------
---------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S------SS---------------
----------------------------------------------------------------
>forward_223
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GCGTTGCTGTGACAGAGATG-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>reverse_3544
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-----------------------ATTGTTGACTGCGGTCGCTA-------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------
