>input_sequence_77991
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--------------------------------------------------------------------ATGGCGACGCTG
CCACAGCGGTTCAAGCTGCTGGCGACGCGGTGCGCGGCGGGGGCGCCCAGCCCCTCGCGCAGCCCCGCGCCGTCCTACGC
CACCAGCCCCGGGTACCGCCTCCGGCGCCGCCGCGGGTCGCGCCTGCGCCGCTTCCTCTGCCGCCGCGTCGGCGGCGGGC
TGCCGGAGCCCGCGGGGCGCCGGGAGGAGGACAAGAAGCCGCTGGTGGGCCGCGGGAGCCGCACGCTGAGGGATCTGTTC
GTCGCGTCGCCGGAGGCGGGGCGCACCCGGCGCGGATGCGGCTGCGACGCCGACAGCGACGACGACGACGACGAGGAGGC
GGGGCGCGCCGGCTCCGGCGGCGCGTTGGGGGCGGCCAGCGGAGGGGGCGGGAGGAGGTTCCGGGCCGCCGGCGGGGGCC
TCCGGAGCCTCCTGATGCGGCGGAGCTGGCGGCCGGTGCTGGTGGCGATCCCGGAGAGCGAGGGCAAGATCGAGCTCGGC
GCCATCGAGGAGTAG-----------------------------------------------------------------
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>chr3A_1_TraesCS3A01G396400
TGACGTGAGAGCCGGGCTTGGTAGTCAGCAGAAGAGAGCTGCTGACCCATCACTGGAGGCCCGAGCTGGCGATAGCTATA
AAACCATAATCCAGAAGAAGGCCATTGCGAGATTCAGGGAGATGTCCTAAGTGCTTTC-TTTATTTCATCGTCGTGTATA
ATTAGTCCGGATACTCGTTTTTATCGGTGTTAATGTCAAAACCCCCAATGCTGTGTGCATTTGTACTGTTAAATTTATCT
T--ATGTGTCTGGCTCCATAAATCTTGGTGTAATTTAAGCACCGAGTA-CAGATTTAATTTGTGTACTCACATTGTTCTG
AAACTAGCTCTGTACCTGTTTTTCTTTTCTTGCCTACTTGAATTCAATGGT-----------------------------
-------------------ATCTAAATTTACCTGTTAGTGGAAATCGTCGCTTGCGCACTAGAAGAAAGTATGTTGCACG
TT------------------------------TGGCATGGTGCACAGCTAGTCTACTGCTGTGTTCTGTTTTCCCCTGAA
AAGTTATGTCAAGCAA---------------------------------AAATTAGAATAAGAAACTCACGGGAATGAAA
GTAACACGAGACAAAAATAAAAGCCAAAAGGATTCTCTTGGCAACCA---CATTTTTATAGTTGCAAGGAAGAGTTAGGT
TTACTGTAGCTACAATAACATCCCTTGATAAGTC-------------------------------TAGCACAGTTTGTCC
CCGTCGGACGGCCAAGATCGTGGAAAATTG-------------------------------CAGAGGATTTGGTCGTATA
CTGAGAGATTTTTTATG-ATAAAATGGCACGTATTTCCTGGGATTTTGATCTGGTCACACTTTGTTTTTTTCCTT-GTAA
GATGACAACATGTTT-GACTGACTGTTGGACAAAATGGCACTGAATGAAGATTTTCTATATTTCCATGTGTGGGCCCACC
CGTCATATACTTCGGGCGAGTCTGCCCTCCATTGTTTTTTCCTCTGGTTCGATCGACTGCT-CGGTACAGAAGTGCCCGA
TCCAAATCACAGGCACCCACTGAGAGTGCACTAGAGGGAGAGAGAGAG----GGAGCAGCGCAGCCGCATGGCGACGCTG
CCACAGCGGTTCAAGCTGCTGGCGACGCGGTGCGCGGCGGGGGCGCCCAGCCCCTCGCGCAGCCCCGCGCCGTCCTACGC
CACCAGCCCCGGGTACCGCCTCCGGCGCCGCCGCGGGTCGCGCCTGCGCCGCTTCCTCTGCCGCCGCGTCGGCGGCGGGC
TGCCGGAGCCCGCGGGGCGCCGGGAGGAGGACAAGAAGCCGCTGGTGGGCCGCGGGAGCCGCACGCTGAGGGATCTGTTC
GTCGCGTCGCCGGAGGCGGGGCGCACCCGGCGCGGATGCGGCTGCGACGCCGACAGCGACGACGACGACGACGAGGAGGC
GGGGCGCGCCGGCTCCGGCGGCGCGTTGGGGGCGGCCAGCGGAGGGGGCGGGAGGAGGTTCCGGGCCGCCGGCGGGGGCC
TCCGGAGCCTCCTGATGCGGCGGAGCTGGCGGCCGGTGCTGGTGGCGATCCCGGAGAGCGAGGGCAAGATCGAGCTCGGC
GCCATCGAGGAGTAGATCAGCGACAT----GACAAGAATTGCATTACCCCGGCCGCCGGCCGCCACGGATCGGAGCCGGG
AATCTCGCGTCGCTTTCCGCCGTCCGTCCTCTTTTCCTTTCTTGATGATTGTTTGTCTCTTTTCCCCACCTTTCGTAGGC
GTCTGTCCGTCCCTGTGAATACGGAAATAGTACCAGATTACTGCCACACTGTTATCCCAAACCGTGAGTGCACAGGCAAA
GTTGACAAATTTGACCTCAAAGCGAAAGCATTTCACAAACTAAACTTCTTTTGAAAATATTTCACACTGCTGATCCTTTT
GTGTAGCGCCCGACAGCAAGGCGCTGCACTCTACTGTGCAACTCCTTACAGCTAGGCGCTGCACAGTGTAGTGCAACTCC
TTAGAGTTAGGCGCTGCACAGTGTGGCGCCTAAGTGTTAGGCGTTGCACAGTAGAGTGCAGTGCCTTGCTGTCAGACACT
GCACATTAAAGATCAATCGGGTGAAATACTTTTAAAAATAGTTTAGTTTGTGAAATAGTTTCGATCTAAGGTCAAATTTG
TGCCTTTTGCCGAGTGCACAAGAACAAAGGCGGTGTGTGCCCGGTGATCTTGTCAGTAATAGGAGCACTGCAGTTCGTTA
GACAAAGCCAGGTGCAGCAATGCATGATGACTGATGGGTACTCCAGAGTAGAGTAGTAGCTCCGGTGATCTTGTCAGCAA
TGGGAGCACTGCACTTAGACAAGGCTAGACGCAGCAATGTGTGCTCCAGTAGAGTGGTACTGATGATGTACCTGCAGCAA
TGCC-AACACAGGTTATCCGAGAAATGTTTACTGGCAAGATAA-CTTGAACCAGCGTAGTAGTAGAACCTACAGGGGTAG
AGCTTTATTTATGTCTGCCACAGTGCAGCACTGTGGCACAGCTTCATTTGTGACCACACACAATCAATGAATCTGGAGTT
GGATGTGCCTGGGCCTGCATGCGTTAT-----------TAGTTTAACCGACCAATGGGCCAGCGTGTCCAGG
>chr3D_1
TGACGTGAGAGCCGGGCTTGGTAGTCAGCAGAAGAGAGCTGCTGACCCATCACTGGAGGCCCGAGCCGGCGATAGCTATA
AAACCATAATCCAGAAGAAGGCCATTGCGAGATTCAGGGAGATGTCCTAAGTGCTTTC-TTTATTTCATCATCTTGTATA
ATTAGTTCGGATACTCGTTTTTATTGGTGTTAATGTTAAAACCCCCAAGGCTGTG--CACTTATACTGTTAAATTTCTCT
TTTCTGTGTCTGGCTCCATAAATCT-----TAATTTAAGCACCGAGTACCAGATTTAATTTGTGTACTCACATTGTTCTG
AAACTAGCTCTGTACCTGTTTTTCTTCTCTTGCCTGCTTGAATTCAATGGTGTGATACTGAAAACTCTTGTGATTTTCTG
AATGGAGTTAAAATCTGGTATCGAAATTTACCTGTTAGTGGAAATCGTCGCTTGCGCACTAGAAGAAAGTATGTTGCACG
TTTTTTTGGACATG------ATGTTGCACGTTTGGCATGGTGCACAGCTAGTCTACTGTTGTGTTCTGTTTT-CCCTGAA
AAGTTATGTCAAGCAATTTTTTGTTTTGTTTTTGAGAATGTCAAGCAAAAATTTAGAACGAGAAACTCACGGGAATGAAA
GTAACACGAGACAAAAATAAAAACCAAAAGGATTCTCTTGGCAACCA---CATTTTTATAGTTGCAAGGAAGAGTTAGGT
TTACTGTAGCTACCCTAACATCCCTTGATAAGTCAGGATCTCGTTCCATTTTTATAGTGGTTGTCTAGCGCAGTTTGTCT
CGGTCGGACGGCCAAGATCGTGGAAACTTG-------------------------------CAGAGGATTTGGTCGTATA
GAGAGAATTTTTTTTTGGATAAAATGGCACGTATTTCCTGGGATTTTGATCTGGTCACACTTTGGTTTTTTCCTTGGTAA
GATGACAACATGTTTTGACTGACTGTTGGACAAAATGGCACAGAATGAAGATTTTCTATATTTCCATGTGTGGGCCCACC
CGTCATATACTTTGGGCGAGTCTGCCCTCCATTGTTTTTTCCTCTGGTTCGATCGACTCCT-CGGTACAGAAGTGCCCGA
TCCAAATCACAGGCACCCACTGAGAGTGCAGTA----GAGAGAGAGAGAGAGGGAGCAGCGCGGCCGCATGGCGACGCTG
CCACAGCGGTTCAAGCTGCTGGCGACGCGGTGCGCGGCGGGGGCGCCCAGCCCCTCGCGCAGCCCCGCGCCGTCCTACGC
CACCAGCCCAGGGTACCGCCTCCGGCGCCGCCGCGGGTCGCGCCTGCGCCGCTTCCTCTGCCGCCGCGTCGGCGGCGGGC
TGCCGGAGCCCGCGGGCCGCCGGGAGGAGGACAAGAAGCCGCTGGTGGGCCGCGGGAGCCGCACGCTGAGGGATCTGTTC
GTCGCGTCGCCGGAGGCGGGGCGCACCCGACGCGGGTGCGGCTGCGACGCCGACAGCGACGACGACGACGAGGAGGAGGC
AGGGCGCGCCGGCTCCGGCGGCGCGTCGGGGGCGGCCGGCGGAGGAGGCGGGAGGAGGTTCCGGCCCGCCGGCGGGGGCC
TGCGGAGCCTCCTGATGCGGCGGAGCTGGCGGCCGGTGCTGGTGGCGATCCCGGAGAGCGAGGGCAAGATCGAGCTCGGC
GCCATCGAGGAGTA-ATCAGCGACAT----GACAAGAATTGCATTCCCCCCG--GCCGGCCGGCACGGATCGGAGCCGGG
AATCTCGCGTCGCTTTCCGCCGTCCGTCCTCCTTTTCTTTCTTGATGATTGTTTGTCTCTTTTTTCCACCTTTCGTAGGC
GTCTGTCCGTCCCTGTGAATACGGAAATAGTCCCAGATTACTGCCACACTGTTATCCTGAACTG----------------
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----------CGAGTGCACAAGAACAAAGGCAGTGTGTGTCTGGTGATCTTGTCAGTAATAGGAGCACTGCAGTTCGTTA
GACAAAGCCAGGTGCAGCAATGCATGATGA-------GTACTCCAGAGTAGAGTAGTAGCTCCGGTGATCTTGTCAGCAA
TGGGAGCACTGCACTTAGACAAAGCCAGATGCAGCAA--TGTGCTCCAGTAGAGTGGTACTGATG-TGTACCTGCCGAAG
TG-C-AACACAGGTTATCCGAGAAATGCTTACTGGCAGGATAAACTTGAACCAGCGTAGTCGTACG---TACAGCGGTAG
AGCTTTATTTATCTCTGCCACAGTGTCGTACTGTGGCACAGCTTCATCTGTGACCACACACAATCAATGAATCTGGAGTT
GGATGTGCCCGGGCCTGCATGCGTTATGATCGGTTTATTAGTTTAACCGACCAACGGGCCCGCGTGTCCAGG
>chr3B_1
TGACGTGAGAGCCGGGCTTGGTAGTCAGCAGAAGAGAGCTGCTGACCCATCACTGGAGGCCCGAGCCGGCGATAGCTATA
AAACCATAATCCAGAAGAAGGCCATTGCGAGATTCAGGGAGATGTCCTAAGTGCTTTTTTTTATTTCATCATCTTGTATA
ATTAGTCCGGCTACTCGTTTTTATCGGTGTTAATGTTAAAACCCTCAATGCTGTGTGCATTTGTACTGTTAAATTTCTCT
TTTATGTGTCTGGCTCCATAAATCCTGGTGTAATTTAAGCACCGAGCACCAGATTTAATTTGTGTACTCACATTGTTCTG
AAACTAGCTCCGTACCTGTTTCTCTTTTCTTGCCTACTTGAATTCAATGGTGTGATACTGAAA-CTCTTGTGATTTTTTG
AATGGGGTTAAGATCTGGTATCGAAATTTACCTGTTAGTGGAAATCGTCGCTTGCGCACTAGAAGAAAGTATGTTGCACG
TTTTTTTTTTGACATGAAGTATGTTGCACGTTTGGCATGGTGCACAGCTAGTCTACTGTTGTGTTCTGTTTTCCCCTGAA
AAGTTATGTCAAGCAA---------------------------------AAATTAGAATAAGAAACTCACGGGAA-----
-----------------------------GGATTCTCTTGGCAACCATTCCATTTTTATAGTGGTTGTCTAGCGCGTTTA
TCAAAAAAAA-------------------------------------------AAAGTGGTTGTATAGCGCAGTTTGTTC
CCGTCGGACGGCCAAGATCGTGGAAACTTGCCCCGTTAAAGAAAAAGATCGTGGAAACTTGCAGAGGATTTAGTCATATA
CTGAGAGAGAT--------------------------CTGGGATTTTGATCTGGTCACACTTTGTTTTTT-CCTT-GTAA
GATGACAACATGTTTTGACTGACTGTTGGACAAAATGGCACAGAATGAAGATTTTCTATATTTCCACGTGTGGGCCCACC
CGTCATATATTTTGGGCGAGTCTGCCCTCCATTCTTTTTTCCTCTGGTTCGATCGACTCCTTCGGTACAGAATTGCCCGA
TCCAAATCACAGGCACCCACTGAGAGTGCAGTA----GAGAGAGAGAG----GGAGCAGCGCAGCCGCATGGCGACGCTG
CCACAGCGGTTCAAGCTGCTGGCGACGCGGTGCGCGGCGGGGGCGCCCAGCCCATCGCGCAGCCCCGCGCCGTCGTACGC
CACCAGCCCCGGGTACCGCCTCCGGCGCCGCCGCGGGTCGCGCCTGCGCCGCTTCCTCTGCCGCCGCGTCGGCGGCGGGC
TGCCGGAGCCCGCGGGGCGCCGGGAGGAGGACAAGAAGCCGCTGGTGGGCCGCGGGAGCCGCACGCTGAGGGATCTGTTC
GTCGCGTCGCCGGAGGCGGGGCGCACCCGCCGCGGATGCAGCTGCGACGCCGACAGC---GACGACGACGAGGAGGAGGC
AGGGCCCGCCGGCTCCGGCGGCGCGTCGGGGGCGGCGAGCGGCGGGGGCGCGAGGAGGTTCCGGCCCGCCGGCGGGGGCC
TGCGGAGCCTCCTGATGCGGCGGAGCTGGCGGCCGGTGCTGGTGGCGATCCCGGAGAGCGAGGGCAAGATCGAGCTCGGC
GCCATCGAGGAGTAGATCAGCGACGGACGGGACAAGAATTGCATTCCCCCCG--GCCGGCCGGCACGGATCGGAG-CGGG
AATCTGGCGTCGCTTTCCGCCGTCCGTCCTCTTTTTCTTTCTTGATGATTGTTTGTCTCTTTTTTCCACCTTTCGTAGG-
-------CGTCCCTGTGAATACGGAAATAGTACCAGATTACTGCCACACTGGTATCCTAAACTG----------------
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----------TGAGTGCACAAGAACAAAGGCAGTGTGTGTCCGGTGATCTTGTCAGTAATAGGAGCACTGCAGTTAGCTA
GACAAAGCCAGGTGCAGCAATGCATGATGACTGATGAGTACTCCAGAGTAGAGTTGTAGCTCTGGTGATCTTGTCAGCAA
TGGGAGCACTGCACTTGGACAAAGCCATATGCAGCAA--TGTGCTCCAGTAGAGTGGTACTGATGATGTACCTGCCGAAG
TG-CCAACATAGGTTAACCGAGAAATGTTTACTGGCAAGATAA-CTTGAACCAGCGTAGTAGCACG---TAGAGTGGTAG
AGCATTATTTATCTCTGCCACAGTGCAGTACTGTGGCACAGCTTCATTTGTGACTACACACAATCAATGAATCTGTAGT-
GGATGTGCCTGGGCCTGCCTGC--------------------------------------------------
>SNPs
------------------------------------------------------------------S-------------
----------------------------------------------------------------------S--S------
------------------------------------S---------------------------------------S---
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----------------------S---------------------------------------------------------
----------------------------------------------------------S---------------------
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----------------------S---------------------------------------------------------
-------------SS------------------------------------------------------S----------
--------------------------S-----------------------------------------------------
--------------S-----------------------------------------------------------------
-----------------------------------------S--------------------------------------
------------S---------------------------------------------S---------------------
------------------------------S--SSSS-------------------------------------------
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-----------------------------S-----------------------------------------S--------
S-------------------------S-------------------------------------S---------------
-S------------------------------------------------------------------------------
---------------------------------------------S----S-SS--------S-----------------
-----------------------------------S---------------------------SS---------------
---------------------------------------------------------S----S-SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---------------------S-------S----------------------------------------
------------------------------------S-------------------------------------------
----------------------S--S---S-------SS------------------------------------S-S-S
--S-------------------------------------------------------------SSSSS-----S-----
------------S---------------S---------------------------------------------------
------------------------------------------------------S-----S-----------
>forward_827
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-------ACGGCCAAGATCGTGGAAAA-----------------------------------------------------
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>reverse_2102
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---------------------TGTGGCGCCTAAGTGTTAGG---------------------------------------
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