>input_sequence_77982
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ATGTGCCATGTGGCACGCCAGGACCACAAAGCAGACCTAATGTTCCGGCTCTA
TGCACCTCCCCGATCCATATTTCTGACCTCCACAGCCCCCACAAGGGCACACAC-----------------------TGC
TCGTCGAACTCAAGCGCACGAACGCC-AAGTACCGTGGCTGACGGCGACGGCGAATAAGATGGTGAGCAGCACCAACGAG
GTGCGGAGGACGGTGCAGGAGAGGCCGGTGGTGGTGGTGGGGCGGCCGGAGTGCTGCCTGGCGGTCGTGGCCCGGCACCT
GCTCCTGCGGCAGGGCGTGAACCCGACGGTGCTGGAGGTCAGCTACGACGCCGACCCGGCGGCGCTCGTCTACGCGCTCC
GGTCCAAGGACGACAACACCAAGTTGGTCACCGACGTCGCCTTACCGGTGGTGTTCGTCGGAGGTAGGCTGTTGGGTGGG
CTGGACCGACTCATTACCATGCACATCGCCGAAGAGCTCGTGCCGCTCCTGAGGCAGGCAGGAGCCCTGTGGCTCTGA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr2D_1_TraesCS2D01G153900
AACTAAAACCATGACGAGTAATTTGGAACGGAGGGAGTAGAAGGCTAAGAACTCGTTTCTTTGTATAACTGGCGGCCATT
TGTCAGATCAATAGCGCCAACAGCAATGGATTCACCACGTACTCCAGTCTACTATACAAAAGTGGACGTGATGTAAACGG
CGAAAACTTGATTTTCAAGTGATCATGATGGCGGTGGCGTCTAATTAACTTTTTTTTGAACACACGTCCGCTAATTAACT
TGTAGTACGTGATATACGTGACGGCAACAGACTTTCTGGCCTTATACCAGTACTGGATCGCATGGGTGTTTCTTTTCTTT
TAAGA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AAAGATATGACATGTCCACACACTTGGTTATCAAAAAAATCATGGC
TAGTTCCGAAGAATGGAAGTTTGGCATTTTTATATGTTTCTTGGACAGATGTTTCTTTTTTAGTGGAAAGACAATGCTCT
TGTAGTTTCTCCAAAA-TAGCAATTGTGACCCCACTGTTAAAATAGAGTGCTAATTATTACTCCCTTGTTTCAAAATAAG
TGACTCGACTTTGTACTAACTTTATATAC-------TAAAGTTGGTACAAAGTTAAGTCACTTATTTTAGGACGAATGGA
G---TATTTTTTAGATGGATGACTATTAGCCACAAATGGTGAAAACTAAGTACTCCTACTAATTTAAGTATAATCAGAAT
GACG--AGTGGGCATGGTGGTACGCATGCCCTGTCCGTCGGGATATG----TCAAGCTCCGAATTTGACGTCATGGGTGT
GTGCATGCGATAGATAGAAGTCTCTATCAACATGGAAAAGCTTAT-GTACGTGTCTCTTATTTAGTTTGTAATGAGCGTG
TATGAGTGACAGTGTGTATTTGCTTGCGTACAAGCGTCGTACTCCCTTCTTTCAAAAAA--------------------T
AACTTTAGTATAAAGTTGAGTCATTTATTTTGGGTCGGAGTGATATATCCTATGTTTAGAATATATTTTATAATTAATAC
GTACAATAAAGGAGTAAAGCTCCATGCATGTGCCATGTGGCACGCCAGGACCACAAAGCAGACCTAATGTTCCGGCTCTA
TGCACCTCCCCGATCCATATTTCTGACCTCCACAGCCCCCACAAGGGCACACAC-----------------------TGC
TCGTCGAACTCAAGCGCACGAACGCC-AAGTACCGTGGCTGACGGCGACGGCGAATAAGATGGTGAGCAGCACCAACGAG
GTGCGGAGGACGGTGCAGGAGAGGCCGGTGGTGGTGGTGGGGCGGCCGGAGTGCTGCCTGGCGGTCGTGGCCCGGCACCT
GCTCCTGCGGCAGGGCGTGAACCCGACGGTGCTGGAGGTCAGCTACGACGCCGACCCGGCGGCGCTCGTCTACGCGCTCC
GGTCCAAGGACGACAACACCAAGTTGGTCACCGACGTCGCCTTACCGGTGGTGTTCGTCGGAGGTAGGCTGTTGGGTGGG
CTGGACCGACTCATTACCATGCACATCGCCGAAGAGCTCGTGCCGCTCCTGAGGCAGGCAGGAGCCCTGTGGCTCTGAAC
CTTCCTTGATGACATGCTGCCCGCTAATGGATGCCAGTCTGAATCAGTTATAAGCTTCCATTCCATGTGTGCGAGTGCTT
TGTTTCCTGTTTTTTCCCCAATGTAT-TATGTCTGCATGCCATATACTCCATCTAGTATTGTAAGCTTCCTTCATCCTTC
AAGAAATGGCAAATAAACCGAGTTTGTTCATAAGATCGACTTGCGCAAAAGGCCTTGGAATCATCCCACCGACTTTCATT
TCATTTCATTTCATTTTATTTTATTTTA----GCGAGGCGGCTTTCAGATTGTTTTTTTTACAAAGGCTTTCAGGTTGTT
GAATAGGCTCGAGGAAGTCATGAATTTTGTAAGTTCTCAACTTTTGCTGACTTGTGTCATGCGACACAATTGTCTTAGGT
TAGGAGGTTGGTTGAGGTCATGAGTGTGGATCGAACAAGACTAATAATTTTAATACTCCCTCTGGTTCTTT-TTACTCCG
CATATAAATTTTGTCTTAAGTCAAACTTCAAAAGGTTTAATCATATTTATATAAAATATATATATTAATAT------CTA
CCATACTAAGTTATACAATGTGAAAATTAAAGCCACGAGACATCTAATGATATTGATTTCGTATTGTGAATGTTCATTAA
TTCTATATGAAATTTTGATTTCAGACAGATCTTATATGGGAAACAAAAATGACTGGATGGAGGAATAAAACAAAGAAGGA
ACTTTACCGTTTCCAGCAAAATTCGGTCGTTGAAGCGAGACAATAGTTACGGAAAAGTCTTTTATCAACCGACGAAACAT
TTTCGAAAGGAAGAGAGTTCAGGAGTTTGACCCCCATTACCAACGTCGGCTATTAGTGCTAGATTGGACGTGCGCATTGG
AATA---AGTCTTCTAAAAGACCGACGTCAGCCCGCAAAAAGGATAGGCGTTATGTTTTTATATTGATATCTTATAAT--
ATTTTCAATAAAAAGGCAGAATTTATTAGCTTAAAATGAAGCACTAAGGGGATAC
>chr2A_35
GAGCTA---------------------------------GAAGGCTAAGAATTCGTTTCTTTGTATAACTAGCGGCCATT
AGTTAGATCGATAGCAGCAACAGCAATGGATTCACTACGTACTCCAGTCTACTATACAAAAACGGACGTGATGTAAACGG
CGAAAACTTGATTTTCAAGTGATCATGATGGCAGTGGCGTCTAATTAACTTTTTTTT-AACACACGTCCGCTAATAAACT
TGGTGTACGTGATATACGTGAC-GCAACAGACTTTCTGGCCTTATACCAGTACTCCATCGCATGGGTGTTTCTTTTCTTT
TAAGA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AAAGATATGACATGT---------------TCAAAAAAATCATGGC
CGGTTACGAAGATTGGAAGTTTGGCATTTTTATCTGTTTCTTGGACAGATGTTTCTTTTTTAGTGGAAAGACAATGCTCT
AGTAGTTTCTC--AAA-TAGCAATTGTGACTCCACTGCTAAAATAGAGCGCTAACTATTACTCCCTCCATTCCA---AAA
TGTCTTAACTTTATACTAATTTTATATTAACTAATATAAAGTTAGTACAAAGTTGAGACATTTATTTTGGGACGGAAGGA
GTACTATTTGTCATATGGATGACTATTGGCCACAAATGGTGAAAACTAAGTACTCCGACTAATTTAAGTATAATCAGAAT
AACGTGAGTGGGCATGGTGGTACGCATGCCATGTCCGTCAGGATATG----TCAAACTCCGAATTGGACGTCATGTGTGT
GTGCATGCGATATAC----GTCTCTATCAACAAGGAAAAGCTTACGGTACGTGTCTCTGATTTAGTTTGTAGTGAGCGCG
TATGAGTGACAGTGTGTATTTCCTTGTGTACAAGCGTTGTACTTCCTCCT---------------ACTCAACTTTATACT
AACTTTAGTATAAAGTTGAGACATTTATTTTGGGTCGGAGTGATATATCCTATGTTTAGAGTATATTTTATAATTAATAC
GTACAATAAAGGAGTAAAGGTCCATGCATGTGCCATGTGGCACGCCAGGACCACGAAGCTGACCTAATGCTCGTGCTCTA
TGCACCTCCCCGACCCATATTTCTGACCTCCACAGCCCCCTCAAGGGCACACACCCCTCACCTCCAGTTGACACTACTGC
TCGTCAATCTCAAGGGCACGAACGCCCAAGTCCCGTGGCTGACGGCGACGGCGAGTAAGATGGTCAGCAGCACCAACGAA
GTGCGGAGGACGGTGCAGGAGAGGCCGGTGGTGGTGGTGGGGCGGCCGGAGTGCTGCCTGGCGGTCGTCGCCCGGCACCT
GCTCCTGCGGCAGGGCGTGAACCCGGCGGCCCTGGAGGTCAGCTACGACGCCGACCCTGCGGCGCTCGTGTACGCGCTCC
GGGCCAAGGACGACAACACCAAGTTGGTCACCGACGTCGCCTTACCGGTGGTGTTCGTCGGAGGTAGGCTGTTGGGTGGG
CTGGACCGACTCATTACCATGCACATCGCCGAAGAGCTCGTGCCGCTCCTGAGGCAGGCAGGTGCCCTGTGGCTCTGAAC
CTTCCTTGATGACATGCTGCCCGCTAATGGATGCCAGTCTGAATCAGTTATAAGCTTCCATTCCATGTGTGCGAGTGCTT
TATTTCCTGTTTTTTCCCCAATGTAT-TATGTCCGCATGCCATATACTCCATCTAGTATTGTAAGCTTCCTTCATCCTTC
AAGAAATGGCAAATAAACCGAGTTTGTTCATAAGATTGACTTGCGCAAAAGGCCTTGGAATCATCCCACCGACTTTCATT
T---------------CATTTTATTTTA----GCGAGGCGGCTTTCAGATTGTTTTTTTCACAAAGGCTTTCAGGTTGTT
GAATAGGCTTGAGGAAGTCATGAATTTTGTAAGCTCTCAACTTTTGCTGACTTGTGTCATGCGACACAATTGTCTC-GGC
TAGGAGGTTGGTTGTGGTCATGTGTGTGGATCAAGCAAGACTAATAATTTTAATACTCCCTTTGGTCCTTTCTTACTCCG
CATATAAATTTTGTCTGAAGTCAAACTTTAAAAAGTTTAGTCATATTCATATAAAATATATTTTAATATCTACCATACTA
-------AAGTTATACAATGTGAAAATTAAAGCCACGAGGCATCTAATGATATTGATTTCGTATTGTGGATGTTAATTAA
TTTTATATAAAATTTTGATTTCAGACAGATCTTATATGGGGAACAAAAATGACCTGAGGGAGGAATAAAACAAAGAAGGA
ACTTTACCGTTTCCAGCAAAATTCAGTCGTTGAAGCAAGACAATAGTTACGGAAAAGTCTTTTTTCAACCGACGAAACAT
TTTGGAAAGGAAGAGAGTTCAGGAGTTTGACCCCCATTACCAACGTCGGCTATTAGTGCTAGTTTGGACGTGCGCATTGG
AATAATAAGTCTTTTAAAAGACCGACGTCAGTCCGCAACAAGGATGGGCGTTATGTTTTTATATTGATATCTTATAAT--
ATTTTAAATAAAAGGGCGGAATTTATTAGCTTAAGATGAAGCACTAAGGGGATAC
>chr2B_261
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ACGGCAACAGACTTTCTGCCCTTACACTAGTACTGGATCGCATGGGTGTTTCTTTTCTTT
TAAGACTAGTTGTCGGACTGGGTGGAGGCATGGGAATGGACGGCGCCGGCAGGCGGCAGCGGCCACCATGCTAGATTGTT
CCAGAAACTTCCTTTTTTTAATTTCTCAGCAATGAGGTTGTGGGAGATAAGGATGTGAAGAGAGGTGCGGGTATCTTTTG
TAAAATTATCATAGTTTGCTTTCTATCCGTCAAATATAGATCGGGCGGTCTATATTACAAGATGGCAGGCACACCATGCA
TCATCACAAACTCGGTTTTTTATAAAGATAAAGAAAAGATATGACATGTTCACACACTTGGTTATCAAAAGAATCATGGC
TGGTTCCGAAGATTGGAAGTTTGGCATTTTTATCTGTTTCTTGGACAGATGTTTCTTTTTAC-TGGAAAGACAATGCTCT
AGTAGTTTCTC--AAAATAGCGATTGTGACTCCACTGCTGAAATAGGGCGATAATTAATTAT------------------
--------------------------------------------------------------------------------
----TATTTGTCAGATGGATGACTATTTGCCACAAATGGTGAAAACTAAGTACTCGTACTAATTTAAGTATAATCAGAAT
CACGTAAATGGGCATGGTGGTACGCATGCCCTGTCCGTCAGGATATGCATGTCAAACTCCGAATTTGATGTCATGTGTGT
GTGCATGCGATAGGC----GTCTCTATCAACAAGGAAAAGCTTACGTACGC-GTCTCTGATTTAGTTTGTAGTGAGCGCG
TATGAGTGACAGTGTGTATTTGCTTGCGTACAAGTGTTGTACTCCCTCCTTTTTAAAAATAAGTGACTCAACTTTATACT
AACTTTAGTATAAAGTTAAGTCATTTATTTTGGGTGGGAGTGATATATCCTATGTTTGGAGTATTTTCTATAATCAATAC
GTACAATAAAGGAGTAAAGCTCCATGCATGTGCCATGTGGCACGCCAGGACCACGAAGCTGACCTAATGTTCCGGCTCTA
TGCACCTCCCCGATCCATATTTCTGACCTCCACAGCCCCCACAAGGGCACACACCCCTCACCTCAGTCGA----------
TCGTCAATCTCAAGCGCACGAACGCG-AAGTCCCGTGGCCGACGGCGACGGCCGCAACCATGGTCAGCAGCACCAACGAG
GTGCGGAGGACGGTGCAAGAGAGGCCGGTTGTGGTGGTGGGGCGGCCGGAGTGCTGCCTGGCGGTCGTGGCCCGGCACCT
GCTCCTGCGACAAGGCGTGAACCCGGCGGTGCTGGAGGTCAGCTACGACGCCGACCCGGCGACGCTCGTCTACGCGCTCC
GGTCCAAGGACGACAACACCAAGTTGGTCACCGACGTCGCCTTCCCGGTGGTGTTCGTCGGGGGCAGGCTGTTGGGCGGG
CTGGACCGACTCATTACCATGCACATCGCCGAGGAGCTCGTGCCGCTCCTGAGGCAGGCAGGAGCCCTGTGGCTCTGAAC
CTTCCTGGATGACACGCTGCCCGTTAATGCATCCCAGCCTGAATCAGTTATAAGCTTCCGTTCCATGTGTGCGAGTGCTT
TGTTTCCTGTTTTTTCCTCAATGTATCTATATCCGCATGCCATATACTCTACCTAGTATTGTAAGCTTCCTTTATCCTTC
AAGAAATGGCAAATAAACCG-GTTTGTTCATAAGATCGACTTGCGCAAAAGGCCTTGGAATCATCCCACCGACTTTCATT
T---------------TATTTTATTTTAATTAGCGAGGAGGCTTTCAGATTGTTTTTT-CACAAAGCCTTTCAGGTTGTT
GAATAGGCTCGAGGAAGTGATGAATTTTGTAAGATCTCAACTTTTGCTAACTTGTGTCATGCGACACAATTGTCTG-GGC
TAGGAGGTTGGTTGAGGACATGTATGTGGATCGAACAAGACTAATAATTTTAATACTCCCTCTTGCCCTTT-TTACTCCG
CATATAAAATTTGTCTGAAGTCAAACTTTAAAAAGTTTAACCATATTTATATAAAA---ATATATTAATAT------CTA
-------AAGTTATACAGTGTGAAAATTAAAGCCACCACACATCTAATGATATTGATTTCGTATTGTGATTATTAATTGT
CTTTATATAAAATTTTGATTTCAGACAAATCTTATGTGGGGAACAAAAATGACCGGAGGGAGGAATAAAACAAAGAAGGA
AGTTTACCGTTTCCAGCAAAATCCGGTCGTTGAAGCGAGACAGTAGTTATGGAAAAGTCTTTTTTCAACCGGCGAAACAT
TTCGCAAAGGAAGAGAGTTCAGGA-----------------------GGCTATTAGTGCTAGTTTGGACGTGCGCATTGG
AAC---AAGTCTTTTGAAAGACCGACGTAAGCCCGCAAAAAGGATGAGTGTTACGTTTTTTTATTGATATCTTATAATTT
ATCTTCAATAAAAAGGTGGAATTTATTAGCTTAAAATGAAGCATTAAGGGGATAC
>SNPs
S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S------------------S---------
S--S-----S-----SS------------------S-------------------------SS-----------------
--------------------------------S------------------------S-----------------S----
--SS----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
-S----------S--------------------S----------------------------------------------
S----------SS-----------------S------S----------S-----------------SSS---S-SSS--S
--S--SS-----S------S-------SS--------------S----------S--S--S-------S-----S-S---
---------S-S---------------S----------------------------------------------------
S--------------------------------------S---------------S-------------------S----
--------------SSSSS-------------S-----------S-------------S------------S------S-
-------------------------------------S---------S----SS--------------------------
------------------------------------------------------------S-------------------
------------------------------------------------------S----S--------------------
--------------------------------------------------------------------------------
-----S-S-----------------------S----------------------S---------S---------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
-SSSSSSSSSSSSSSS-------------------------------------------S--------------------
---------------------------------S-----------------------------------------SS--S
----------------------S-------------------------------------------S-------------
----------------S-----------S----S----------------------------------------------
SSSSSSS-------------------------------------------------------------------S-----
--S-----S-------------------------------S------------S---S----------------------
---------------------------------------------------------------S----------------
---S----------------------------------------------------------S-----------------
-------------S-------------------------------S----------------------------------
-----------------S-------------------------------------
>forward_758
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------AGCAATTGTGACCCCACTGT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_2703
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------ATTGGACGTGCGCATTGG
AA------------------------------------------------------------------------------
-------------------------------------------------------
