>input_sequence_77973
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------------------------------------------------------------ATGGCAGCAGGAACGGCTTG
GGCGGGGTGCCATCTCGCCCGCCTCCCCCACATTCCCATCTCGGTCAGCATCCCCGTGGCCGGCGCTGGCGCTAGCAGCA
GGAGGAGGCGGCCCGGGTTAGCGGCGGCGGCGGGGGCAGCAGCAGCAGCAGCGACAGACGGGCGGGTGCTGGGCCGGCGC
CCCGTGGAGGACGTGTACAAGGTGCGCGTGGTGCGCGGCGCGGCGGCGCAGGAGCGGGTGGAGGCGCTGCGGGCGATGGA
GACGTGGTCGACGTGGCGCACGGGCGGCCGCTGCCGCCTGGCCTGGGACTGGCAGGTGGACCAGCTCGTGTACATCGTCG
CCGGCGAGGTCCGCGTGCTCCCCGCGGGTGCCACCACCGGCGAGGAGTACATGCACTTCGTCGCCGGCGACCTGGTCCGG
TACCCCAAGTGGCTGGAGGCGGACCTCCACTTCGACGGGCCCTACGAGGAGCGCTACCGCTTCCTCGCCTACGGCGACGA
CAACTGA-------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G201400
CATATCTATTCTGTTCTACTCTAGGACTGTGGAATGTAAATACTGATGTTTTCTACTGATGGCATGACACGCTCAATATT
TGTGGTTTAGTCTGAAGAAATCACAGTATTTACTCTACTTTGTTGGTTTGTTGGGAATGACTAGCTAGAATGCCAAGGCT
AAAGATGGAAAATTATGTGATGCTTTTCCTGGATTGGTGGTGTTGTGGACATGGTGGTGTTAGCTGCTTCAGATCCATGT
CGAAGAAGCTGAAGCAAAGGGTCTGTGCTGC-------------------------------------------------
----AGGTATGAAAATTGTGAATGGATATTTCTCGGACCCCTACTAGTCTGTAGTTGGGT-AA------------TGTTG
TTGTTGGAGTCAGCAGAAACAAAGAGATGTATTT-AGAAAAGTTGCGGAGAATATCTGAAGAAATCAAGCCCTTAAAAGA
ACCAAGATTATTTTCTTATCAGAAAGATAGGAAGAGAGTGCAATACTGTAGCTCATCATCTAGCTTTGCTAAC-------
--------------------------------TAGAAATCAGGGTGTAAATGATGTCCGGTTCAGACTTAGTGCCTGAAC
CTATGCGCGAGCTTTTGTATCT----------------------------------------------------------
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---------------------GACAATGTAAAATTCCCTTAAAAGGGTAATGTTAACTAGCGAACGTCGTTAAGAAAGAA
CTCCCAGCGA------TCGCAGCCATTTGATCGAGATCAAATGATGGTAAA-------AAAAAATAATGCGTTCACACC-
GTGAAATTGTCATGTTAGTCTCAAGAAATTGTCACCCTCCTACAACTAAAATTGCCGCAAAAATTGTTCGCAATTGCCAT
TCTCCCCAGTGATGCGCAGAAACAAAATATCTACACGAATCTCAACATAAGATCAATGACATAGGACTTAGATGTGCAAT
ACTTATAGCACATCTAGATGTGCTTTAGCAAAACTGATAAAATATTTGTAAACTCCGTGTTACACCCCC-----------
-------------------------------------------------CATAGCCGAGCCC-GAGCGAGGGAGGATAAG
GTAAAGGAGGCAGGCAAAGCGAGACCAGAGCGTAGCAGTCAGCGTGTGAGAGAGAGAGAGATGGCAGCAGGAACGGCTTG
GGCGGGGTGCCATCTCGCCCGCCTCCCCCACATTCCCATCTCGGTCAGCATCCCCGTGGCCGGCGCTGGCGCTAGCAGCA
GGAGGAGGCGGCCCGGGTTAGCGGCGGCGGCGGGGGCAGCAGCAGCAGCAGCGACAGACGGGCGGGTGCTGGGCCGGCGC
CCCGTGGAGGACGTGTACAAGGTGCGCGTGGTGCGCGGCGCGGCGGCGCAGGAGCGGGTGGAGGCGCTGCGGGCGATGGA
GACGTGGTCGACGTGGCGCACGGGCGGCCGCTGCCGCCTGGCCTGGGACTGGCAGGTGGACCAGCTCGTGTACATCGTCG
CCGGCGAGGTCCGCGTGCTCCCCGCGGGTGCCACCACCGGCGAGGAGTACATGCACTTCGTCGCCGGCGACCTGGTCCGG
TACCCCAAGTGGCTGGAGGCGGACCTCCACTTCGACGGGCCCTACGAGGAGCGCTACCGCTTCCTCGCCTACGGCGACGA
CAACTGAACCGCTCCTCCTGGACGAATCCTGCCTGTATCGTCAGTAGCCTAGCTAGCTCCTTAGTC-------CTACTAG
TTCACTGAAGCTTTCGTTCGAGTTCCTGCCTGGATG------ATTTCCTTTTGTTTACC---ATATACTCCTAGCCTGGG
ACAACAAGGAGTACGTATTTCCTAG----TCGTTTGAGTTCATTGTCGTGGTGATGCAAAAGAGCG----TGTCCATTTG
ATGATTCGATTGGGCATTGCTGGTAGCCCTCCTTCCACCGCCGGCCTTGTCCAGGACTAGTATGTTCGATCGGCTTTGGG
ACGCGGTCTACAGCACTAGTAGGAATGCAGGTGAGGATTACAACTTCTCTTGGCGCTGGAGCCGCCCAACTGGTTCTTAC
AGAGTATCTCTGCCTACAAGCTGTTGTGCCAAGGACAGATTAGATTTTTAGAGAAAATGCATCGGCCGAGCCTGAGATAG
GGCTTGAGCCTAGCTCGGCTTTGAACTAACAAAGCAATCAACCGGCCAGGATTTCAAGCATACACCTAGAGGCAGCGAGA
AATAAAACACAGAGCGGAAATATACAAAGGCGCTGGAAAGCAGCAATGAAGCATGAAGTCGTCGACGCCGAGGTCCTCCT
CCGTGAACAAAGCGCCGAGAACAATAACACGCTGGCTCAAGAGGAGAAAGGCAGACCCGCACCATAGGGGAATGCCATCA
CCAAGCTACTACAGACCCCGGCACGGCACATCCAACAACATCCATTTTCGAAGGAGGCCACAACCTCCTCGCCTAGATCG
AAGGTGCCGTACCGTCACGAGATGGTAAAGTTCCCCAAGAACAATGGTGGATGCCGCCGGAAAATGGCCACATACAGTGG
GTCAGCACACCCCCAAGACGAGCCACCGACGCTTCTCCTCAATCAGAACACCACTGCTCCTCACGTCCAGCAACCAGAGG
AGGAAAAGCAGCAGCTAGGACAGAGGGCACCACCGACACCACCACCCGCACCCCAACAGCGCCCACCTCCC
>chr1A_1
CATATCTATTCTGTTCTACTCTAGGATTGTGGGATGTAAATACTGATG-TTTCTACCGATGGCATGACACGCTCA-TATT
TGTGGTTTAGTCTGAAGAAATCACAGTATTTACTCTACTTTGTTCGTTTGTTGGGAATGACTAGCTAGAATGCCAACGCT
AAAAATGGAAAATTATGGGATGCTTTTCTTGGATTGGTGGTGTTGTGGACGTGGTGGCGTTAGCTGCTTCAAATCCATGT
CGAAGAAGCTGAAGCAAAGGGTCTGTGTTGTACTCCCTCCGTCCCGAAATAAGTATCTCAAGCTTTTGGGACGAAGGGAG
TACTAGGTATGAAAATTGTGAATG-ATATTCCTCGGACCCCTACTATTTTGGAGTTGGGT-AATGTTGTTGCTGTTGTTG
TTGTTGGAGTCAGCAGAAACAAATAGATGTATTTAAGAAAAGTTGCGGAGAATATCTGAAGAAATCAAGCCCTTG-AAGA
ACCAAGATGATTTTCTTATCAGAAATATAAGAAGAGAGTGCGATACTGCAGCTCATCATCTAGCTTTGCTAGTAGTTTCA
AAAAAAAGTCCTGCATTATGGGACGGAGGGAGTAGAAATCAGAGTGTGAATATTGTCTGGTTCGGACTT-GTGCCTGAAC
CTATGCGTGAGCTTTTGTATCACTAGCCGCCGCCTCCAAAAAACCTAGCTTTCTGCCTCCCACCGGCGCCGGCGCCGGGC
CATCCCGTCTCCGGTGGCCCTATAGCCATGGAGGCGGAGTGGATCTCGGCCCTTGCCGGTGGGAGGGCTCCATTTTTAGA
TCTTTTTTCGAGCTTTATTAGGGTTTGTGTCCTGCTCAGGAAGGCGAGATGGTGGCGGCTCCCTGAAGATGGAATAAAGG
TCTTCCCGCCTAGCCCCGTTCCGGTGATGCATCTTGCATTGTTGGTGGGTGTGTGGAGTTGTGTCTCCGGCGGATCTGTC
TTTGTTGAATTTGCTCGGATCTGTTCGTCGTTCGTTTTCGTTCGTGTGTTTTCAGATTGGATCCTTTTGATCTACACTCT
TCATCCGCGGCGGTTGCTGATCTGGTGCGTTGGTTCTACGGGGTCTTAGCACGGCGACTTTCCGACTGTCTACTGCAACA
AGATTTGCCCGGCTCCGGCGAGGGAGGGGCGATGACAGCGGCGCGCCTTCGGCTCGCTTCAGTGCTTGTAGTCGTCGCTA
GGTGGTCTACGGATCTGGATGTAATTTTTATTATTTCTAGTGTTCGTTGTACTACCATAATTAAAGATAAATAGATTGGA
AGTTTTTCCCGCAAAAAAAAAGACAATGTAAAATTCCTTTGAAGGGT--------------AAC------TAAGAAGGAA
CTCCCAG--------ATCGCAGCCGTTGC-------------------AATTTTTTCT-AAAAAAAATGCATTCACTACA
G------TGACATGCTAGTCTCCAGAAATTGTCACCCTCCTACGGCT--------------AATTGTTCGTGATTGCCAT
CCGCCTAGCGAACGTTCGCCAACT--------------------------------------------------------
--------------------------------------------------AACTCCGTGTTACACCCCCAACCCCAAGGC
ACTAAATAACTAATTGGAGACTGGTAAAGACGTAAATATATGCCCCGTCCATAGCCGAGCGAGGAGGGAGGGAGGATAAG
GTAAAGGAAGCAGGCAAGGCGAGACGAGAGCGTAGCAGTCAGCGTG----AGCAAGAGAGATGGCAGCAGGAACGGCCTG
GGCGGGATGCCATCTCGCCCACCTCCCCCAAATTCCCATCTCGGTCAGCATCCCCGTGACCGGCGCTGCCGCTAGCAGCA
GGAGGAGGAGGTGCGGCTTAGCGGCGGCGGCGGGGGCAGCAGCAGCAGCAGCGACAGACGGGCGGGTGCTGGGCCGGCGC
CCCGTGGAGGACGTGTACAAGGTGCGCGTGGTGCGCGGCGCGGCGGCGCAGGAGCGGGTGGAGGCGCTGCGGGCGATGGA
GACGTGGTCGACGTGGCGCACGGGGGGCCGCTGCCACCTGGCCTGGGACTGGCAGGTGGACCAGCTCGTGTACATCGTCG
CCGGCGAGGTCCGCGTGCTCCCCGCCGGGGCCACCACCGGCGAGGAGTACATGCACTTCGTGGCCGGCGACCTGGTCCGG
TACCCCAAGTGGCTGGAGGCGGACCTCCACTTCGACGGGCCCTACGAGGAGCGCTACCGCTTCCTCGCCTACGGCGACGA
CAACTGAACCGCGGCGCCCCCT-------------------------CCTAGCTAGCTCCTTTAGTCCTTCTACTACTAG
TTCACTGAAGCTTTCGTTCGAGTTCTAGCCATAT-----AGTATTTCCTTTTGTTTACT---ATATACTCCTAGCCTGGG
ACAATAAGGA----GTATTTCCTAGTCGATCGTTTGAGTTCATTCGAGAAGCACTGCACAATCTCCTTGTTGTACATTTG
ATGATTCGATTGGACATTGCTGGTAGCCCTCATTCCACCGCTGGCCTTGTCCAGGACTAGTATGTTCGATCGGCTTTGGG
ATGCGGTCTACAGCACTAGCAGGAATGCAGGTGAGGATTGCAAGTTCTCTTGGCGCTGGAGCCGCCCAACTGGTTCTTAC
AGAGTATCTCTGTCTACAAGCTGTTGTGCCAAGGACAGATTAGATTTTTAGAGAAGGCTC-------------GAGATAG
GGCTTGAGCCTAGCTCGGCTTTGAATTAATAAAGCAATCAACCGGCCAGGGTTTCAAGCATACACCCATAGGCAGCGAGA
AAGAAAACACAGAGCGGAAATATACAAAGGCGCTGGAAAGCAGCAATGAAGCATGAAGTCGTAGACGCCGAGGTCCTCCT
CCGTGAACAAAGCGCCGAGAACAAGAACACGC-GGCTCAAGAGGAGAAAGGCAGACCCGCACCATCGGGGAACGCCATCA
CCAAGCTACTACAGACCCCGGCACGGCACATCCAACAACATCCATCTCCGAAGGAGGCCACAACCTCCTCGCCTAGATCG
AAGGTGCCGTACCGTCGCGAGATGATAAAGTTCCCCAAGAACAATGGTGGATGCCTCCGGAAAATGGCCACATACAGTGG
GTCAGCGCACCC--AAGCCGAGCTACCGGCGCTTCTCCTCAAGCAGAACACCACCGCTCCCCACATCCAGCAACCAGAGG
AGGAAAAGCAGCAACTAGGACAGAGGGCACCACCGACGCCACCACCCGCACCCCAACAGCGCCCACC----
>chr1B_1
CATATCTATTCTGTTCTACTCTAGGATTGTGGGATGTAAATACTGATG-TTTCTACTGATGGCATGACACGCTCAATATT
TGTGGTTTAGTCTGAAGAAATCACAGTATTTACTCTACTTTGTTCATTTGTTGGGAATGACTAGCTAGAATGCCAAGGCT
AAAAATGGAAAATATTGGGATGCTTTTCTTGGATTGGTGGTGTTGTGGACGTGGTGGCGTTAGCTGCTTCAAATCCATGT
CGAAGAAGCTGAAGCAAAGTGTCTGTGTTGTACTCCCTCCGTCCCGACATAAGTGTCTCAAGCTTTTGGGACGGAGGGAG
TACTAGGTATGAAAATTGTGGATG-ATATTTCTGGGACCCCTACTATTCTGGAGTTTGGGCAATGTTGTTG---TTGTTG
TTGTCGGAGTCAGCAGAAACAAAGAGATGTATTT-AGAAAAGTTGCGGAGAATATCTGAAGAAATCAAGCCCTTG-AAGA
ATCAAGATGATTTTCTTATCAGAAAGATAGGAAGAGAGTGCAATACTGTAGCTCATCATCTAGCTTTGCTAGTAGTGT-A
AAAAAACGTCCTACATTATGGGACGGGGGGAGTAGAAATCAGAGTGTGAATATTGACCGGTAAGGAATT-GTGCCTGAAC
CTATGCGCAAGCTTTTGTATCA----------------------------------------------------------
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-------------------AAAAAAATGTAATATTCCCTTAAAGAG-TAATGTTAACTGAAAAC------TAAGAAGGAA
CTCCCAGCGAATGCAATCGCAGCCGTTTGATCAAGATCAAACGACGATAATTTTTTCTAAAAAAAAATGCATTCACTACA
GTGAAAGTGTCATGCTAGTCTCCAGAAATTGTCACCCTCCTACAGCT--------------ACTTGTTCGTGATTGCCAT
CCTCCCAGCGAACGTTCGCCAACT--------------------------------------------------------
--------------------------------------------------AACTCCGTGTTACACCCCCAG------GGC
ACTAAATAAGTAATT-------------------------------------------------------GGAGGATAAG
GTAAAGGAGGCAGGCAAAGCGAGACGAGAGCGTAGCAGTCAGCGTG----AGAGAGAGAGATGGCAGCAGGAACGGCCTG
GGCGGGATGCCATCTCGCCCGCCTCCCCCACATTCCCATCTCGGTCAGCATCCCCGTGGCCGGCGCTGGCGCTAGCAGCA
GGAGGAGGGGGTGCGGGTTAGCGGCGGCGGCGGGGGCAGCAGCAGCAGCAGCGACAGACGGGCGGGTGCTGGGCCGCCGG
CCCGTGGAGGACGTGTACAAGGTGCGCGTGGTGCGCGGCGCGGCGGCGCAGGAGCGGGTGGAGGCTCTGCGGGCGATGGA
GACGTGGTCGACGTGGCGCACGGGGGGCCGCTGCCGCCTGGCCTGGGACTGGCAGGTAGACCAGCTCGTGTACATCGTCG
CCGGTGAGGTCCGCGTGCTCCCCGCCGGGGCCACCACCGGCGAGGAGTACATGCACTTCGTGGCCGGCGACCTGGTCCGG
TACCCCAAGTGGCTGGAGGCGGACCTCCACTTCGACGGGCCCTACGAGGAGCGCTACCGCTTCCTCGCCTACGGCGACGA
CAACTGAACCGCCCCTCCTGGACGAATCCTGCCTGTATCGTCAGTAGCCTAGCTAGCTCCTTGGTCCTT----CTACTAG
TTCACTGAAGCTTTCGTTCGAGTTCTAGCCATATACTCCAGTATTTCCTTTTGTTTACCATAATACACTCCTAGCCTGGG
ACAAGTAGTACT--GTATTTCCTAG----TCGTTTGAGTTCATTCGAGAAGCACTGCACAATCTCCTTGTTGTACATTTG
ATGATTCGATTG-ACGTTGCTGGTAGCCCTCCTTCCACCGCTGGCCTTGT------------------------------
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>SNPs
--------------------------S-----S---------------S-------------------------------
--------------------------------------------S-----------------------------------
---S-------------S----------S---------------------S------S-------------S--------
---------------------------S--S-------------------------------------------------
------------------------S---------------------S----S----------------------------
--------------------------------------------------------------------------SS----
--------S--------------------------------------------------------------SS-------
------------------------------------------S----S---SS----------S-----S----------
---------------------S----------------------------------------------------------
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-------------------------------------------S--S-----------SSSS-SSSSSSS------S---
------------------------S-------S--------S--S-S---S-------------S-----S-----SS--
------S-------S-------S---------------------S--SSSSSSSSSSSSSS---------SS--------
S-----SSSSS-S-SS-SSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------
------------------------------------------------------------SS----S-------------
-------------------------S--------------------SSSS---------------------------S--
------S-------------------------------------------------------------------------
--------S--SS-------------------------------------------------------------------
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------------------------S-------------------------------------------------------
-------------------------S--S--------------------------------S------------------
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------------S-------------------------------------------------S-----------------
-------------------------SS---SSSSSS--------------------------------------------
----S-----S-SS------------------------------SSS-SS-SSS----S--SSS-S-------S------
-------------S---------------------------S--------------------------------------
-S-----------------S-------------------S---S------------------------------------
------------S------------------------------------------SSSS-SSSSSSSSSSSSS-------
-------------------------S---S--------------------S---------------S-S-----------
--S-----------------------------------------------------------S-----------------
------------------------S-------S--------------------------------S------S-------
---------------------------------------------S-S--------------------------------
----------------S-------S------------------------------S------------------------
------S-----SS---S-----S----S-------------S-----------S-----S---S---------------
-------------S-----------------------S-----------------------------SSSS
>forward_1529
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---------------------------------------------------------------------GCAATTGCCAT
TCTCCCCAG-----------------------------------------------------------------------
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>reverse_3026
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-----------------------------------------------------------------AGGGGAATGCCATCA
CCAAG---------------------------------------------------------------------------
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