>input_sequence_77970
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----------------------------------ATGGAGTGCCTAGTGCTAGTGCTCCATCTGCTTCTGCTCCTAGTGG
TACTGCTCCACTTTCTGCTACTCCTAGTGCTCCTAGGGGAAGTGCTCGTCCACCAAGTGAAGCACCTGTTCTGGTAAGCT
CGTTCACCATATTTTTCTGCCGTACTTTCTTTTTTGTACCACTGCTGATATAATGTAGTACATCTAATTATTCTATTATA
GAGTTCACAACAAAGCACTTCACACAAAAGAAGGGCCACCGAGGAGATGGCACCACCAAGACAAGCAAAGAGAAGGGCGC
CAACTAATAACAACAGTAGGTCAAATAATTTCTCTGGAAATACCTTCAATGTACATGGAAGCTCGAATGTCAATGTCAAT
GTTTGCACTGGTACTTCTCGCGCGACAACTAGCAGCAAAGTTACCAAAGAGAGGTGCAGTAGCAATGGTAGTAACAAAGG
CAAGGGGACTGGCAAGGCCAAATATGCTCGGTTTCGAAGCTTGCTGGGATTTGAAAATTGA-------------------
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>chr1D_1_TraesCS1D01G070300
TCAAGCTTCACCCAGATTTTGAAGAACCAACATTCCACCACTTTTATGTGTGCTTTGATGCTTGTAAGAAGGGCTTCTTT
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-------------------------------------------------------------GCAAAAAGGAATATTGAAT
GTTGTTCACCACTGGGCTCCAATGGCAGAGCATAGGAATTGTGCTAGGCACATATATGCTAACTGGAGGAAAAAATATAG
GGAAAAGGACTGGCAAAAGCTATTCTGGGCTTGTGCAAAAGCACCTTGCACAATGTTGTTCAATCTTGCAAGGGCCAAGT
TAGCACAATGCACACCTGATGGAGCAAGGGATGTTATGAACACAGACCCACAACACTGGAGCAGGGCTTGGTTCAGGTTA
GGAAGCTGTTGTGATTCTGTGGACAACAACATTTCTGAAACTTTTAACAAATGGATAGTTGAGGCTAGATTATATCCTGT
GAT------------AACAATGTTCGAAACAATTAGGCAGCAAATTATGATCAGGATACAAGAAATGAGAAGTGAGATGG
AAAGTTGGACTGGCATCATCTGTCCAAAAGTACTGAAGAAGCTACAGAAAAGCATAGATTATTCTGCTTATTGTCATGCA
ATTTTTAATGGCAATGATGCTTATGAAGTGAAGACAAGAGTACATAGGTACACTGTCAGATTGTATGACAGGACATGTAG
TTGTAGGTATTGGCAGTTGTCAGGCCTTCCTTGCTCTCATGCCATCAGCTGCATACACTGCACTACAAACAAATTGGATG
ATTACATTGCTGATTGCTACAGAGTGGATAATTTCAAAAAAA-CTTATGCTTATTGTCTGCAAGCTCTTGAGGGAAGAGC
TGCATGGCCTGTGTCTCAGAGACCAAAACCAAAAGCACCTAGGCACATCAATATGCCTGGTAGGAAAAAGAAGTGTAGAA
CAAGAGAAGAGGAAGAAAAACCAAAGACTAGCAAAGTTAGCAAGGTTGGCACAGTGATCAAGCGTAGCTTGTGCAAGCAT
AGTGGACACAACAAAACAACTTGCAAACAAAGAAATGGAGTGCCTAGTGCTAGTGCTCCATCTGCTTCTGCTCCTAGTGG
TACTGCTCCACTTTCTGCTACTCCTAGTGCTCCTAGGGGAAGTGCTCGTCCACCAAGTGAAGCACCTGTTCTGGTAAGCT
CGTTCACCATATTTTTCTGCCGTACTTTCTTTTTTGTACCACTGCTGATATAATGTAGTACATCTAATTATTCTATTATA
GAGTTCACAACAAAGCACTTCACACAAAAGAAGGGCCACCGAGGAGATGGCACCACCAAGACAAGCAAAGAGAAGGGCGC
CAACTAATAACAACAGTAGGTCAAATAATTTCTCTGGAAATACCTTCAATGTACATGGAAGCTCGAATGTCAATGTCAAT
GTTTGCACTGGTACTTCTCGCGCGACAACTAGCAGCAAAGTTACCAAAGAGAGGTGCAGTAGCAATGGTAGTAACAAAGG
CAAGGGGACTGGCAAGGCCAAATATGCTCGGTTTCGAAGCTTGCTGGGATTTGAAAATTGAGAGTTATTTGTGTGCTTGT
GAGATTTGGGTGTCGATCAGACCTATCTATGTGAGACCTATGTGTCAGACCTATTTGTGAGACCTTTGTGTGTATCAGAC
CTATCTATATGTATGTGAGACCTATGTATGTGTGTTTCAGACCTATATATATGTATGTGTGACCAAGTTCTGTTCAAGCC
TTTTTATTTGTTCATATGATGCTCAAATGGTACCAAATGGCACCAAAATGCTGCCGAATTTTGACCAGCAGATTAGGATA
TTTTTCAAATTATCGACTTATGCATTATACATTCATTTCAATGCTGACATGGCATGCTGACTGGACGAGTTGACCTGGTC
AACATGTGCTGACTGGACCAAAACCAGGGTCAAGGCGAGACAGGGGGGTAATTCGTCTGGTTTTGACAGTTGGAGGGTGC
AACTTAGATGGTATAATAGATGAGGGGTGTATATTAGACCGACCAAAGAGTTGAAGGTTGATATATGCACTTCTCTCTTA
ATCAATTGTGGCATGAAGCC---ACAACCATAGCACGTAGAAAATCTAGACTCTGTTTAGTGAGATGCATATTTGCATGC
TATATTGGACACAGGAAGTTATGTCATGCTAGCTACCCGGAAGTGAATTTTCCATCATAATGT-TTTTCCACACATATAT
GGGAAAAA--GGGTGAACTAGCAGAAGCTCAGATAGACCTGCACAGTTTCATTAGTAGTAAATGTGTAGACATTGCACTT
ATATGATATATGCAGCACAACAAATAACTATGATTGTTATAGTCCCCACAGAAAATAAAATAAAAATAAGATTACAGTCA
TATGTAGAAAGGTACCAAAAACGAGGAAGCACTTTTTTTTGCAGAGAATAAAGGAGTTTTATTCTGGTACTGTGTTCAGA
ACAACCAAAATTTGCCAAATAATTAGCCAACCTATTTTGGTCTCAAGCTACTTTCTAGGGCATAAACTTCCATTCTTGCA
TCAACCTTTTGATCTCATCAACTAGAT
>chr1A_1
TCAAGCTTCACCCAGATTTTGAAGAACCAACATTCCACCACTTTTATGTGTGCTTTGATGCTTGTAAGAAGGGCTTCTTA
GCTGGGTGTAGGAAAGTTATATCCTTAGATGGATGCTTTTTGAAAGGGAGAGCAGGAGAGATATTAAGTGCCGTTGGTAG
AGATGCAAATCATCAGATGTATCCAATAGCATGGGCACTTGTGGATAAGGAGACCAATGAATCTTGGGACTGGTTTTGTA
GCTTGTTGTTTAATGATCTGAAAGTTGGAGATGGTGATGGGTGGGTTATAATTTTTGATCAGCAAAAAGGAATATTGAAT
GCTGTTCACCACTGGGCTCCAATGGCAGAGCATAGGAATTGTGCTAGGCACATATATGCTAACTGGAGGAAAAAATATAG
GGAAAAGGACTGGCAAAAGCTATTCTGGGCTTGTGCAAAAGCACCTTGCACAATGTTGTTCAATCTTGCAAGGGCCAAGT
TAGCACAATGCACACCTGATGGAGCAAGGGATGTTATGAACACAGACCCACAACACTGGAGCATGGCTTGGTTCAGGTTA
GGAAGTTGTTGTGATTCCGTGGACAACAACATTTCTGAAACTTTTAACAAATGGATAGTTGAGGCTAGATTATATCCTGC
GAT------------AACAAT------------TAGGCAACAAATTATGATCAGGATACAAGAAATGAGAAGTGAAATGA
AAAGTTGGACTGGCATCATCTGTCCGAAAGTACTGAAGAAGCTACAGAAAAGCATAGATTATTCTGCTTATTGTCATGCA
TTTTTTAATGGCAATGATGCATATGAAGTGAAGACAAGAGTACATAGGTACACTGTCAGATTGCATGAAAGGACATGTAG
TTGTAGGTATTGGCAGTTGTCAGGCCTTCCTTGCTCTCATGCCATCAGCTGCATACACTGCACTACAAACAAATTGGATG
ATTACATTGCTGATTGCTACAGAGTGGATAATTTCAAAAAAA-CTTATGCTTATTGTCTTCAACCTCTTGAGGGAAGAGC
TGCATGGCCTGTGTCTCAGAGACCAAAACCAAAAGCACCTGGGTACATCAATATGCCTGGTAGGAAAAAGAAGTGTAGAA
CAAGAGAAGAGGAAGAAAAACCAAAGACTAGCAAAGTTAGCAAGGTTGGCACAGTGATCAAGTGTAGCTTGTGCAAGCAA
AGTGGACACAATAAAACAACTTGCAAACAAAGAAATGGAGTGCCTAGTGCTAGTGCTCCATCTGCTTCTGCTCCTAGTGG
TACCGCTCCACTTTCTGCTACGCCTAGTGCTCCTAGGGGAAGTGCTCGTCCACCAAGTGAAGCACCTGTTCTGGTAAGCT
CGTTCACCATATTTTTCCGTCGTACTTTCTTTTTTGTACCACTTCTGATATAATGTAGTACATATAATTGTTCTATTACA
GAGTTCACAACAAAGCACTTCACACAAAAGAAGGGCCACCGTGGAGATGGCACCACCAAGACAAGCAAAGAGAAGGGCGC
CAACTAATAACAACAGTAGGTCAAATAATTTCTCTGGAAATACCTTCAATGTACATGGAAGCTCGAATGTGAATGTCAAT
GTTTGCACTGGTACTTCTCGCGCGACAACTAGCAGCAAAGTTACCAAAGAGAGGAGCAGTAGCAATGGCAGTAACAAAGG
CAAGGGGACTGGCAAGGCCAAATATGCTCGGTTTCGAAGCTTGCTGGGATTTGAAAATTGAGAGTTATTTGTGTGCTTGT
GAGGTTTGGGTGTCGATCATACCTATCTATGTGAGACATATGTGTCAGACCTATTTGTGAGACCTTTGTGTGTATCAGAC
CTATCTATATGTATGTGAGACCTATGTATGTGTGTTTCAGACCTATATATATGTATATGTGACCA-GTTATGTTCAAGCC
TTTTTATTTGTTCATATGATGCTCAAATGGTACCAAATGGCACCAAAATGCTGCCAAATTTTGACCAGCAGATTA-GATA
TTTTTCAAATTATTGATTTATGCATTATATATTCATTTCATTGTTGACATGGCATGCAGACTGGACGAGTTGACCTGGTC
AACATGTGCTGACTGGACCAAAACCAGGGTCAAGGCCAGATAGGGGGGTAATTCGTCTGGTTTTGATAGTTGGAGGGTGC
AACTTAGACGGTATAATAGATGAGGGGTGTATATTAGACCGACCAAAGAGTTGAAGGTTGATATATGCACTTCTCTCATA
AGCAA---------------------------------------------------------------------------
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>chr2A_1
TCAAGCTTCACCCAGATTTTGAAGAACCAACATTCCACCAC-TTTATGTGTGCTTTGATGCTTGTAAGAAGGGCTTCTTA
GCTGGGTGTAGGAAAGTTATATCCTTAGATGGATGCTTTTTGAAAGGGAGAGCAGGAGAGATATTAAGTGTCGTTGGTAG
AGATGCAAATCATCAGATGTATCCAATAGCATGGGCACTTGTGGATAAGGAGACCAATGAATCTTGGGACTGGTTTTGTA
GCTTGTTGTTTAATGATCTGAAAGTTGGAGATGGTGATGGCTGGGTTATAATTTCTGATCAGCAAAAAGGAATATTGAAT
GTTGTTCACCACTGGGCTCCAATGGCAGAGCATAGGAATTGTTCTAGGCACATATATGCTAACTGGAGGAAAAAATATAG
GGAAAAGGACTGGCAAAAGCTATTCTGGGCTTGTGCAAAAGCACCTTGCACAATGTTGTTCAATCTTGCAAGGGCCAAGT
TAGCACAATGCACACCTGATGGAGCAAGGGATGTTATGAACACAGACCCACAACACTGGAGCAGGGCTTGGTTCAGGTTA
GGAAGTTGTTGTGATTCTGTGGACAACAACATTTCTGAAACTTTTAACAAATGGATAGTTGAGGCTAGATTATATCTTGT
GATAACAATGTTCGAAACAAT------------TAGGCAACAAATTATGATCAGGATACAAGAAATGAGAAGTGAAATGG
AAAGTTGGACTGGCATCATCTGTCCAAAAGTACTGAAGAAGCTACAGAAAAGCATAGATTATTCTGCTTATTGTCATGCA
ATTTTTAATGGCAATGATGCATATGAAGTGAAGACAAGAGTACATAGGTACACTGTCAGATTGCATGACAGGACATGTAG
TTGTAGGTATTGGCAGTTGTCAGGCCTTCCTTGCTCTCATGCCATCAGTTGCATACACTGCACTACAAACAAATTGGATG
ATTACATTGCTGATTGCTACAGAGTGGATAATTTCAAAAAAAACTTATGCTTATTGCCTGCAACCTCTTGAGGGAAGAGC
TACATGGCCTGTGTCTCAGAGACCAAAACCAAAAGCACCTAGGCACATCAATATGCCTGGTAGGAAAAAGAAGTGTAGAA
CAAGAAAAGATGAAGAAAAACCAAAGACTAGCAAAGTTAGCAAGGTTGGCACAGTGATCAAGTGTAGCTTGTGCAAGCAA
AGTGGACACAACAAAACAACTTGCAAACAAAGAAATGGAGTGCCTAGTGCTAGTGCTCCATCTACTTCTGCTCCTAGTGG
TATTGCTCCACTTTCTTCTACGCCTAGTGCTCCTAGGGGAAGTGCTCGTCCGCCAAGTGAAGCACCTGTTCTGGTAAGCT
CGTTCACCATATTTTTCCGCCGTACTTTCTTTTTTGTGCCACTGCTGATATAATGTAGTACATCTAATTGTTCTATTACA
GAGTTCACAACAAAGCACTTCACACAAAAGAAGGGCCACCGTGGAGATGGCACCACCAAGACAAGCAAAGAGAAGGGCGC
CAACTAATAACAACAGTAGGTCAAATAATTTCTCTGGAAATACCTTCAATGTACATGGAAGCTCGAATGTGAATGTCAAT
GTTTGCACTGGTACTTCTCGCGCGACAACTAGCAGCAAAGTTACCAAAGAGAGGAGCAGTAGCAATGGCAGTAACAAAGG
CAAGGGGACTGGCAAGGCCAAATATGCTCGGTTTCGAAGCTTGCTGGGAATTGAAAATTGAGAGTTATTTGTGTGCTTGT
GAGGTTTGGGTATCGATCAGACCTATCTATGTGAGACATATGTGTCAGACCTATTTGTGAGACCTTTGTGTGTATCAGAC
CTATCTATATGTATGTGAGACCTATGTATGTGTGTTTCAGACCTATATATATGTATATGTGACCA-GTTATGTTCAAGCC
TTTTTATTTGTTCATATGATGCTCAAATGGTACCAAATGGCACCAAAATGCTGCCAAATTTTGACCAGCAGATTA-GATA
TTTTTCAAATTATCGATTTATGCATTATATATTCATTTCATTGTTGACATGGCATGCTGACTGGACAAGT----------
---------TGACTAGACCAAAACCAGGGTCAAGGCGAGACAGGGGGGTAATTCGTCTGGTTTTGATAGTTGGAGGGTGC
AACTTAGACGGTATAATAGACGAGGGGTGTATATTAGACCGACCAAAGAGTTGAAGGTTGATATATGCACTTCTCTCT--
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>chr1A_263
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---CACAATGCACACCTGATGGAGCAAGGAATGTTATGAACACAGACCCACAACACTGGAGCAGGGCTTGGTTCAGGTTA
GGAAGTTGTTGTGATTCTGTGGACAATAACATTTCTGAAACTTTTAACAAATGGATAGTTGAGGCTAGATTATATCCTGT
GATAACAATGTCCGAAACAAT------------TAGGCAGCAAATTATGATCAGGATACATGAAATGAGAAGTGAGATGG
AAAGTTGGACTGGCATCATCTGTCCAAAAGTACTGAAGAAGCTACAGAAAAGCATAGATTATTCTGCTTATTGTCATGCA
ATTTTTAATGGCAATGATGCATATGAAGTGAAGACAAGAGTACATAGGTACACTGTCAGATTGCATGACAGGACATGTAT
TTGTAGGTATTGGCGGTTGTCAGGCCTTCCTTACTCTCATGCCATCAGCTGCATACACTGCACTACAAACAAATTGGATG
ATTACATTGCTGATTGCTACAGAGTGGATAATTTCAA--AAAACTTATGCTTATTGTCTGCAACCTCTTGAGGGAAGAGA
TGCATGGCCTGTGTCTCAGAGAACAAAACCAAAAGCACCTGGGCACATCAATATGCCTGGTAGGAAAAAGAAGTGTAGAA
CAAGAGAAGAGGAAGAAAAACCAAAGACTAGCAAAGTTAGCAAGGTTGGCATAGTGATCAAGTGTAGCTTGTGCAAGCAA
AGTAGACACAACAAAAGAACTTGCAAACAAAGAAATGGAGTGCCTAGTGCTAGTGCTCCATCTGCTTTTGCTCCTAGTGG
TACTGCTCCACTTTCTGCTACTCCTAGTGCTCCTAG-GGAAGTGCTCGTCCACCAAGTGAAGCACCTATTCTGGTAAGCT
CGTTCACCATATTTTTCCGCCATACTTTCTTTTTTGTACCACTGCTGATATAATGTAGTACATCTAATTGTTCTATTACA
GAGTTCACAACAAAGCACTTCACACAAAAGAAGGGCCACCGAGGAGATGGCACCACCAAGACAAGCAAAGAGAAGGGCGC
CAAGTAATAACAACAGTAGGTCAAATAATTTCTCTGGAAATACCTTCAATGTACATGGAAGCTCGAATGTGAATGTCAAT
GTTTGCACTGGTACTTCTCGCGCGACAACTAGCAGCAAAGTTACCAAAGAGAGGAGCAGTAGCAATGGCAGTAACAAAGG
CAAGGGGATTGGCAAGGCCAAATATGCTCGGTTTCGAAGCTTGCTGGGACTTGAAAATTGAGAGTTATTTGTGTGCTTGT
GAGGTTTGGGTGTCGATCAGACCTATCTATGTGAGACATATGTGTCAGACCTATTTGTGAGACCTTTGTGTGTATCAGAC
CTATCTATATGTATGTGAGACCTATGTATGTGTGTTTCAGACCTATATATATGTATGTGTGACCA-GTTTTGTTCAAGCC
TTTTTATTTGTTCATATGATGCTCAAATGGTACCAAATGGCACCAAAATGCTGCCAAATTTCGACCAGCAGATTAGGATA
TTTTTCAAATTATCGATTTATGCATTATATATTCATTTCATTGTTGACATGGCATGCTGACTGGACGAGTTGACCTGGTC
AACATGTGCTGACTGGACCAAAACCAGGGTCAAGGCGAAACAGGGGGGTAATTTGTCTGGTTTTGATAGTTGGAGGGTGC
AACTTAGACGGTATAATAGACGAGGGGTGTATATTAGACCGACCAAAGAGTTGAAGGTTGATATATGCACTTCTCTC---
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>chr7A_1098
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---------------------------------------------------ACCAAGTGAAGCACCTGTTCCGATAAGCT
CGTTCACCATATTTTTCTCCTGTACTTTCTTTTTTGTACCATTGCTGATATAATGTAGTACATCGAATTGTTCTTTACAT
-AGTTCACAACAAAGCACTTCACACAAAAGAAGGGCCACCGAGGAGATGGCACCACCAAGACAAGCAAAGAGAAGGGCGC
CAGCTAATAACAACAGCAGGTCAAACAATTTCTCTAGAAATACCTTCAATGTACATGGAAGCTTGAATGTCAATGTCAAT
GTCTGCACTGGTACTTCTCGCGCGAGAACTAGCAGCAAAGTTACCAAAGAGAGGAGCAGTAGCAATGGCAGTAACAAAGG
CAAGGGCACTCGCAAGGCCAAATATGCTCGGTTTCAAAGCTTGTTGGGATTTGAACGTTGAGAGTTATTTGTGTGCTTGT
GAGATTTGGGTGTCAATCAGACCTATCTATGTGAGACCTATGTGTCAGACCTATTTGTGAGACCTTTGTGTGTATCAGAC
GTATCTATATGTATGTGAGACCTATGTATGTGTGTTTCAGACCTATATATATGTATGTGTGACCAAGTTCTGTTCAAGCC
TTTTTATTCGTTCATATGATGCTCAAATGG----------CACCAAAATGCTGCCAATTTTTGACCAGCAGATTAGGATA
-TTTTCAAATTATCAATTTATGCATTATACATTCATTTCATTGCTGATATGGCATGTTGACTGGATGAGTTGACCTGGTC
AATATGTGTTGACTGGACCAAAACCAGGGTCAAGGCGAGACA-GGGGGTAATTCGTCTGGTTTTGATAGTTGGAGGGTGC
AACTTAGACGGTATAATAGATGAGGGGTGTATATTAGACCCACCCAGGAGTTGAGGGTTGAT------------------
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>chr1D_1997
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----------------------------------------------------------------------TTCACTCCTA
CTCAATCATGGCATCAAGTCAATACAACCATAGCATGTACGAAACCTGGACTCTGTTTAGTGAGATGCATATCTGTATGC
TATAGTGGACACAGGAAGTTATGTCATGCTACCCGGTA--AAGTGAAGTTTCCATGATAATGTGTTTTCCACACATATAT
GGGAAAAAAAGGGTGGACTAGCAGAAGCTCAGATAGACTTGCACAGTTTCATTAGTAGCAAATGTGTAGACATTGCACTT
ATATGATATATGCAGCACAACAAATAACTATGATTGTTATAGTCCCCAA--AAAATAAAATAAAAATAAGATTACGGTCA
TATGTAGAAAGGTACCAAAAACGAGGAAGCACTTTT--TTGCAAAGGTTGAAGGAGTTTTATTCCGGTACTGTGTTCAGA
ACAACCAAATTTTGCCAAATAATTAGCCAACCTATTTTGGTCTCAAGCTACTTTCTAGGGCATAAACTTCCCTTCTTGCA
TCAACCTTTTGATCTCATCAACTAGAT
>SNPs
-------------------------------------------------------------------------------S
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-----S--------------------------------------------------------------------------
---------------------SSSSSSSSSSSS-----------------------------------------------
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--------------------S------------------------------------------S----------------
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---------------------------------------------------------------S----------------
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--------------------------------------------------------------S----------------S
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---------------------------------------------------------------------S--------S-
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------------------------------------------------------S-------------S-----------
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-------------------------------------------------------S------------------------
----------------S-----------------------S---------------------------------------
------------------------------------------------------------------S-------------
--------S-----------------------------------------------------------------------
------SS------S---S----------------S---SS---S--S------------------------S--S----
----S--------------------------S-SSSSSSS-------S-------S------------------------
---------------S----------------------S-------------------S---------------------
------------------------------------------------SSS------------------------S----
------------------------------------SS-----S--SS-S--------------S---------------
---------S-------------------------------------------------------------S--------
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>forward_1183
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-------------------------------------------GGTTGGCACAGTGATCAAGC-----------------
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>reverse_2255
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--------------GAAGCCACAACCATAGCACG----------------------------------------------
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