>input_sequence_77962
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--------CGCCTGCCGGCCGTTCGCCATATGGAGTCCAACGGCGGCGAGGGAGAGTGCGACATCGACCTCAACCTCTCC
CTGCATCGGGCGTCGTCGCCGGAGCCGCTGGGCTACTTCACCTGCACCTACTGCGACAAGAAGTTCTACTCCTCCCAAGC
GCTGGGCGGCCACCAGAACGCCCACAAGTTCGAGCGCAGCGTCGCCAAACGCACGCGGGAGCTGGCCGCCGCGCGCCGCC
ACGGCCACGCGGGCCGGGTCGGCGCCGGCGAGGAGGGCAGCAGGGGAGGGAAGGACCCGACCAGCAATGCCGCGGGGAGC
TCCTCGCACAGGAGGGTGTCGCCGCCGGAGGCAGCTCGCCGGGACCTCATCACCGAGGAGATCGATCTGTCTCTCAAGCT
CTGATATTACTGGATCGAGGTTCTTGTCACTGCAAACTTATGGTCTATTCGCCTTATTACTGGGTTCTTGTGATTTCTTA
CTCATTTTATGTCTAGAATGAAAGTATGAAACCTCG--------------------------------------------
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>chr5B_1_TraesCS5B01G216300
GCAACTATCGGTTGTTTTTTTCTGCTTATGTTACTTTGATGCTACAAACACCACTCCATTCATCATCTTATCATTGTTAC
TAATAATTTCTATGAGCAAGCACTTGTTTCGGGTGTGGTTGAATTGATAACTCAACTGTCAAAACTTACAAGTATTCTCT
CGCTTCCATCATGTCGAATAGAAATTAGGGTTGAAATACTTTCCAACGAAGGCTGTTGTGGTCTCCTATACTTTGTGGGC
TATCACATGCTACCATATATAGTG---AGGTGATTTGTATTCCCTCAGTTCCGAAATAAGTGCCATGGA-----------
-----------------CATACATCCCTATTATCAAGACAAGTCT----GTCTTACAAGTGTATCCAGCATCCAAGAAAA
AATAAATAAAAACAAAGTGAGCCTCATCTCTCAATGGTTAGACGAGCAACCGCAAGAATCAGAAACAAA-CACTCAAAGT
TTCATAATTCTTAAGTAAACATATTTCTTTTCTTTTAA-CATTTTTTGCGATATTTCTAACTATTTAATTGATGAGTGGC
TGTACAATTCTCGCGTGAAAATATTGCGGATACTTGAG-------CAAGCTCTGGGGCATACGGTGACGGTCAGACCAGT
GGGTGAACAATTCTTTCTTTGTCGTAGGTCCACAGCTTTCGGTCCAAGATCCAGCGGATAGCAGTACCCCAATCTGCTGG
CGAGCAATCCTATTCGTCTACTGGCTGATCCATCGGTACATGAAATCTCTTGTCCTTTTCATCGTTTTCCTCTTTCTCAC
CCTGATAGATCCTGCACAGTACGTGTGTTCCTTAGAACAAGCGTACA----ATACTACCCTCGTACACCTACTTCCTCTC
CTCCTCTCTACTCCCTTCTAGGGTTGTGCTGTACCGCTTAAATCATTTGGGTGGGAAACTGGGGGCACTGCCGTACGCAT
CGATTCTCCTCGACAACTAGAATACACAAGCTAGCTAGCTAGTTTGCACCTGCTGAGACCCCCGTTCGCACCACCTTTGC
GCCTTTACCGCCTGCCGGCCGTTCGCCATATGGAGTCCAACGGCGGCGAGGGAGAGTGCGACATCGACCTCAACCTCTCC
CTGCATCGGGCGTCGTCGCCGGAGCCGCTGGGCTACTTCACCTGCACCTACTGCGACAAGAAGTTCTACTCCTCCCAAGC
GCTGGGCGGCCACCAGAACGCCCACAAGTTCGAGCGCAGCGTCGCCAAACGCACGCGGGAGCTGGCCGCCGCGCGCCGCC
ACGGCCACGCGGGCCGGGTCGGCGCCGGCGAGGAGGGCAGCAGGGGAGGGAAGGACCCGACCAGCAATGCCGCGGGGAGC
TCCTCGCACAGGAGGGTGTCGCCGCCGGAGGCAGCTCGCCGGGACCTCATCACCGAGGAGATCGATCTGTCTCTCAAGCT
CTGATATTACTGGATCGAGGTTCTTGTCACTGCAAACTTATGGTCTATTCGCCTTATTACTGGGTTCTTGTGATTTCTTA
CTCATTTTATGTCTAGAATGAAAGTATGAAACCTCGCATAGAGCTTCTTCTCCCTTTTCTTTTGCTA---TTTTTTTACC
GGGGCACAATTTACTATATAAGTACTACTACT-------CATAAGCAAGGCAAAGACATACTATGGTGAGATACACTGCT
CCAGAATGGCCGCATACGGTATGTTACAAAGTTACTGCCCGAGTTACAAGGATGAAAACAGCATATTACTAGGCGAGACA
TGGACACATGCAGTACTAGCCATGCCATGCAGCGAAGCAGCTGCAGGCGTAGCATCATAGCCAACAGATAGCTAAGCCTC
ATCAATAATTCTTGTAAAGCAAATCTGTGGGTGGTTCTCTGTAGTTGTGTGGTCCAGTCGGCCTTCCAATAGGATAGGAT
CCCCCTGTCGCTGCTGCTCCTTGTTCTGTACCGTGCATAAAACACGTGACTTATTACCTTCCTCTGTCGTTATTGGGATA
GTGATACCAACTGAATAACTGTAATAATTTGAAGTGATGGGGAGGTTGCAACAGGTGGTTGTGCTGGCGATGCAGAAGAG
AAAAACTTGTGGAAAAGGAAA--GCAGCAGGAATAAAATCCCAATAAATTATTTCTTGGACACAGAATCCCAATAAATTC
TTCCCTATGCCTTTTTTGCAAAGCCAATTCTTCTGTATGTAGATGTTCACATCGAAACATCCATCTCTTATTTTTTCGCA
AAGGAGGTTTTACCCCGCCCTCCGCATCATGCGGTGCACACATCCATAACCTCCACCTCTTGTTTGTA--AATAAATACA
AATAATAATCAAATGATGTACTGTATTATGCACTACAGGAAAATTACATGCTGCCGAGTATTAACGTGTAAGTCGAGTGT
TAAAACA----TTCTCGGCTTAAACCAACCTAAGCCGAGTAGTGACCGGAGAATACACAACAAAAAATAGGTACTCGGCT
TCCATACGAGTAAGCTGAGTGTGTGCACAAAAGGCTGTCTGTGCACGACCGATACTCGGCATACAGGAGGAAAGGCACTC
GGCTTACAGCCATT
>chr5D_1
GCAACTACCGGTTG-TTTTTCCTGCTTATGTTACTTTGATGCTACATACACCACTCCATTCATCATATTACCATTGTTAC
TA-TAATTTCTATGAGCAAGTACTTGTTTCAGGTGTGGTTGAACTGACAATTCAACTCCCAAAGCTTACAAGTATTCTCT
CGCTTTCATCACATTGATTAGAAATTAGGGTTGAAATACTTTCCAACGAAGGCTGTTGTGCTCTCCTATACTTTGTGGGC
TATCACATGCTACCATATATAGTG---AGGTGATTTGTACTCCCTCGGTTCTTAAATAAGTGTCGTGGACCTAAAACCAC
GATACTGAACCCTGGTGCATACATCCCTATTATCAAGACTACTGTCTCACTCTTACAAGTGTATCCAGCATCCAAGAAAA
AAGAAATAAAAACAAAGTGAGCCTCATCTCTCAATGGTTAGACGAGTAACCACGAGAATCAGAAACAAAGCACTCAAAGT
TTTATAATTCATAAGTAAACATATTT------------------------------------------------------
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>chr5A_16
---------------TTTTTTCTGCTTATATTACTTTGATGCTACATACACCACTCCATTCACCATATTATCATTGTTAC
TAATAATTTCTTTGAGCAAGTACTCTTTTCAGGTGTGGTTGAATTGACAATTCAATTGCCAAAGTTTACACGTATTCTCT
CGCTTCCATCATGTCGAATAGAAATTAGGGTTGAAATACTGTCCAACAAAAGTTGTTGTGCTCCCCTATATTTTGTGGGC
TATCACATACTACCATATACAGTGAGAAGGTGATTTGTACTCCTTCGGGTCCAAAAAAGGAATCCTTGATCTCTTTATCA
TAA---------TGGCGCATGCATCCCAAATATGAAGAGTAGTGTCTCAGTCTTACAAGTGTATCCAGCATCCAAGAAAA
AAGAAATAAAAACAGAGTGAGCCTCATCTCTCAACGGTTAGACGAGCAACCGCGAGAATCAGAAACAAA-CACTCAAAGC
TTTATAATTCTTAAGTAAACATATCTCCTTTTCTTTAGCCATTTTTTTGCGATATTCTAACTATTTGATTGATGAGTGGC
TGTACAATTCTCACGTGAAAATATTGCGGATACTTGAGAAATGAGCAAGCTCCGGGGCATACGGTGACGGTCAGACCAGT
GGTTGAACAATTCTTTCTTTGGCGTATGTCCACAGCTTTCGGTCCAAGATCCAGCGGACAGCAGCACCCCAATCTGCTGG
CAAGCAATCCTATTCGTCTACTGGCTGATCCATCGGTACATGAAATCTCTTGTCCTTTTCATCGTTTTTCTCTTTCTCAC
CCTGACAGATCCTGCACAGTACGTGTGCTCCTTAGAACAAGCGTACAATATATACTACCCTCGTACACCTACTTCCTCTC
CTCCTCTCTACTCCCTTCTAGGGTTGTGCTGTACCGCTTAAATCATTTGGGTGGGAAATTGGGGGCACCGCCGTACGCAT
CAATTCTCCTAGACAACTAGAATACACAAGCTAGCTAGCTAGTTCGCACCTGCTGAGACCCCCGTTCGCACCACCTTTGA
GCCTTTTCCGCCGGCCGGCCGTTCGCCATATGGAGTCCAACGGCGGCGAGGGAGAGGGCGACATCGACCTCAACCTCTCC
CTGCATCGGGCGTCGTCGCCGGAGCCGCTGGGCTACTTCACCTGCACCTACTGCAACAAGAAGTTCTACTCCTCCCAAGC
GCTGGGCGGCCACCAGAACGCCCACAAGTTCGAGCGCAGCGTCGCCAAACGCACGCGGGAGCTGGCCGCCGCGCGCCGCC
ACGGCCACGTGGGCCAGGTCGGCGCCGGCGAGGAGGCCAGCAGGAGAGGGAAGGACCCGACCAGCAATGCCGCCGGGAGC
TCCTCGCACAGGAGGGCGTCTCCGCCGGAGGCAGCCCGCCGGGACCTCATCGCCGAGGAGATCGATCTGTCTCTCAAGCT
CTGA-ATTACTGGATCGAGGTTCTTGTCACTGCAAACTTATGGTCTATTCGCCTTATTACTGGGTTCTTGTGATTTCTTA
CTCATTTTATGTCTAGAATGAAAGTATGAAACCTCGCATAGAGCTTCTTCTCCCTTTCCTTTTGCTGTC-TTTTTTTACC
GGGTCATAATTTACTATATCAGTACTACTACTCATAAGGCATAAGCAAGGCAAAGACATACTATGGTGATATGCACTGCT
CCAGAATGGCCGCATACGATATGTTACAAAGTTACTGCCCAAGTTACAAGGATGAAAACAGCATATAACTAGGCGAGACA
TGGACACATGCAGTACTAGCCATGC-----AGCGAAGCAGCTGCAGGCGTAGCATCATAGCCAACAGATAGCTAAGCCTC
ATCAATAATTCTTGTAAAGCAAATCTGTGGGTTATTCTCTGTAGGTGTGTGGTCCAGTTGGCCTTCCAATAGGATAGGAT
CCCCCTGTCGCTGCTGCTCCTTGTTCTGTACCGTGCATAAAACACGTGACTTATTACCTTCCTCTGTCGTTATTGGGATA
GTGATACCAACTGAATAACTGTAATAATTTGGAGTGATGGGGAGGTTGCAACAGGTGGTTGTGCTGGCGATGCAGAAGAG
AAAAGCTTGTGGAAAAGGAAAAAGCAGCAGGAATAAAATCCCAATAAATTATTTCTTGGACACAGAATCCCAATAAATTC
TTCCCTATGCCTTTTTTGCAAAGCCAATTCTTCTCTATGTAGATGTTCACATCGAAACATCCATCTCTTGTTTTTTCAAA
AAGGAGGTTTA-CCCGGCCTT-CGCATCATGCGGTGCACACATCCATAACCTTCACCTCTTGTGGTTGTGAATAAATACA
AATAATAATCAAATGATGTACTGTATTGTGCACTACAGGAAAATCACATGCTACCGAGTATTAACGTGTAAGCCGAGTGT
TAAAACACGGGTTCTCGGCTTAAATCAACCTAAGCCGAGTAGTGACCGGATAATACATAGCAAAAAATAGGTACTCGGCT
TCCATACGAGTAAGCCGAGTGTGTGCACAAAACGCTCTCTGTGCATGACCGATACTCGGTATATAGGAGGAAAGGCACTC
GGCTTACAGCCATT
>chr5D_468
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-----------------------TTTCTTTTCCTTTAACCATTTTTTGCAATATTTCTAACTATTTAATTGATGAGTGGC
TGTACAATTCTCACGTGAAAATATTGGGGATACTT-------GAGCAAGCTCCGGGGCATACGGTGACGGTCAGACCAGT
GGGTGAACAATTCTTTCTTTGTCGTAGGTCCACAGCTTTCGGTCCAAGATCCAGCGGATAGCAGTACCCCAATCTGCTGG
CGAGCAATCCTATTCGTCTACTGGCTGATCCATTGGTACATGAAATTTCTTGTCCTTTTCATCGTTTTCCTCTTTCTCAC
CCTGATAGATCCTGCACAGTACGTGTGTTCCTTAGAACAAGCGTACA----ATACTACCCTCGTACACCTACTTCCTCTC
CTCCTCTCTACTCCCTTCTAGGGTTGTGCTGTACCGCTTAAATCATTTGGGTGGGAAATTGGGGGCACCGCCGTACGCAT
CCATTCTCCTAGACAACTAGAATACACAAGCTAGCTAGCTAGTTTGCACCTGTTGAGACCCCCGTTCGCACCACCTTTGC
ACCTTTTCCGCCGGCCGGCCGTTCGCCATATGGAGTCCAACGGCGGCGAGGGAGAGGGCGACATCGACCTCAACCTCTCC
CTGCATCGGGCGTCGTCGCCGGAGCCGCTGGGCTACTTCACCTGCACCTACTGCAACAAGAAGTTCTACTCCTCCCAAGC
GCTGGGCGGCCACCAGAACGCCCACAAGTTCGAGCGCAGCGTCGCCAAACGCACGCGGGAGCTGGCTGCCGCGCGCCGCC
ACGGCCACGTGGGCCAGGTCGGCGCCGGCGAGGAGGCCAGCAGGAGAGGGAAGGACCCGACCAGCAATGCCGCCGGGAGC
TCCTCGCACAGGAGGGCGTCTCCGCCGGAGGCAGCCCGCCGGGACCTCATCACCGAGGAGATCGATCTGTCTCTCAAGCT
CTGATATTACTGTGTCGAGGTTCTTGTCACTGCAAACTTATGGTCTATTCGCCTTATTACTGGGTTCTTGTGATTTCTTA
CTCATTTTATGTCTAGAATGAAAGTATGAAACCTCGCATAGAGCTTCTTCTCCCTTTCCTTTTGCTGGCTTTTTTTTACC
GGGTCATAATTTACTATATCA--ACTACTACT-------CGTAAGCAAGGCAAAGACATACTATGGTGAGATGCACTGCT
CCAGAATGGCCGCATACGGTATGTTACAAAGTTACTGCCCAAGTTACAAGGATGAGCATATA------------GAGACA
TGGACACATGCAGTACTAGCCATGC-----AGCGAAGCAGCTGCAGGCGTAGCATCATAGCCAACAGATAGCTAAGCCTC
ATCAATAATTCTTGTAAAGCAAATCTGTGGGTGGTTCTCTGTAGGTGTGTGGTCCAGTTGGCCTTCCAATAGGATAGGAT
CCCCCTGTCGCTGCTGCTCCTTGTTCTGTACCGTGCATAAAACACGTGACTTATTACCTTCCTCTGTCGTTATTGGGATA
GTGATACCAACTGAATAACTGTAATAATTTGAAGTGATGGGGAGGTTGCAACAGGTGGTTGTGCTGGCGATGCAGAAGAG
AAAAGCTTGTGGAAAAGGAAAAAGCAGAAGGAATAAAATCCCAATAAATTATTTCTTGGACACAGAATCCCAACAAATTC
TTCCCTATGCTTTTTTTGCAAAGCCAATTCTTCTGTATGTAGATGTTCACATCGAAACATCCATCTCTTGTTTTTTCGAA
AAGGAGGTTTACCCCGGCCTC-GGCATCATGCGGTGCACACATCCATAACCTCCACCTCTTGTGGTTGTGGATAAATACA
AATAATAATCAAATGATGTATTGTATTGTGCACTACAGGAAAATCACACGCTGCCGAGTATTAACGTGTAAGCCGAGTGT
CAAAACACGGGTTCTCGGCTTAAATCAACCTAAGCCGAGTAGTGACCGGAGAATACACAGCAAAAAATAGGTACTCGGCT
TCCATACGAGTAAGCCGAGTGTGTGCACAAAAAAT--TCTGTGTACGACCGATACTCGGCATACAGGAGGAAAGACTCTC
GGCTTACAGCCA--
>chr5A_836
CTCCCT--------------------------------------------------------------------------
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----------CTCTCTGCTAGGGTTAGCTACTAC----TTAATCATTTGGCTCAGAAATTGGGGCAGCGCT-----GCAT
CAGTTCTCCTAGACAACTAGAATACGCGAGC---CTAACTAGCTAATTCCTGCTGAGGCCACCGTGCGCACCACCTTTGC
GCTTTTACCACCGGCCGTCCGGCAAACATATGGAGTCCAACGGTGGCGAGGGAGAGGGCAACATCGACCTCAACCTCTCC
CTGCAGCGGGCCTCGTCGCCGGAGTGGTTTGGTTACTTCTCCTGCTCCTACTGCACCAAGAAGTTCTACTACTCCCAGGC
GCTAGGCGGCCACCAGAACGCCCACAAGTCCGAGCGCAGCGTCGCCAAACGCACGCGGGAGCTGGCCTACACGCGCCGCC
AGGGCCACGTGGGCCAGCTCGGT---------GAGGCCAGCAGGAGAGAGAAGGACCCGACTAGCAATGCCACGGGGAGC
TCCTCGCACAGGAGGGCGTCCCCGCCGGAGGCAGCTCGCCGGGACCTCATCAACGAGGAGATCGATCTGTCCCTCAAGCT
CTGATATTA-----------------------------------------------------------------------
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>SNPs
-------S------S-------------------------------S-------------------S-------------
--------------------S---------S----------------S--S-------S----S----------------
------------------------------------------------------------S-------------------
---------------------------------------S------S-----S---------S-S---------------
---------------------------------------S---S------------------------------------
--S--------------------------------------------------S--------------------------
--S-----------------------------S----------------S------------------------------
------------S---------------------------------------S---------------------------
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----------------------------------------------------------S---------S-----------
-S--------S---------------------------------------------------------------------
------------S-------------------------------------------S-----------------------
------------------------------------------------------S-------------------------
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---------S-----S--------------------S-------S-----------------------------------
----------------S---S-----------------------------------------------------------
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---------------------------------------------------------S--------S-------------
---S--S------------S----------------------------------------------------S-------
----------------------------------------S-------------------------S-------------
-------------------------SSSSS--------------------------------------------------
--------------------------------------------S-------------S---------------------
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----S---------------------------------------------------------------------------
---------------------------------------------------------------------S--------S-
----------SS---S---S-S-----------------------------------------SSS-S------------
---------------------------S----------------S---------------------------S-------
------------------------S----------------------------------S--------------------
---------------S----------------S---S-------------------------------------------
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>forward_221
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-----------------------------------------TCCAACGAAGGCTGTTGTGG-------------------
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>reverse_2239
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AAGGAGGTTTTACCCCGC--------------------------------------------------------------
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