>input_sequence_77948
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----------------------------------------------------------------------AGAGAAATCT
ACCACCGCTCTCCCTCTTCCTCCCGGCCTGCACACGCACAAGCAGCGA----------------GCCTTCCTCCTCCAGT
CCTCATCTTTCTGCCATGAAGCCCCCTCACTTCACCGGGGAGGCCGCCGCCGGCGCCTCCTGGGCTCACGAGGTCAAGCA
GGCCCTTCGTGACAAGCTCCGGTGGACACCCGCCGCGGGCACCACGGGCACCGGCGGCCACGGCGCCGCGAGGCCGCCGG
CGGCCTCCTCGGCTGTGACCGCCGAGCCGGTGGCGCAGCCGGCCCACGGCGCCGACTGCCGGGGCTTGGCCGCCGCCGAG
GACCCCATCAGGAGGGTCATGTTCTTGGCCCCCTGGGGCCACACATAAACGGAAAAAGCAAGTGCACGCGCGCACGGCCA
TGCCT-----TGGCCGGATCTGCAACTGCACCTCAACAAAAATATGGACTACTACGTACATATATATATGTGGCCGTATG
GACCATGAAC-------TGA---ACATGAACTCATCAAGGACCAATTAAA------------------------------
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>chr4A_1_TraesCS4A01G357400
AACCACAAAAAAAGTTTACTCTCTTCACCTTTTTCATTTTTTTTTGAAGCGAGCATTCACCTTCTTCTTTCATTTGTGTA
TGTTTCTCGGCAACTCAGTCGGAGGTCGTCACAATAAGAAGAAATTGAAAAGAAGCAGCTTTGTGACGGACAAGACTGGG
ACTTTAATAAGATTACAAGCTTTAAAAAAAGCAAAACAAAAACAGAAAATTCAGATATTGTTTTAGGAAAAATGTTTTAT
GTTCATGTCGTTTTGTTCTGTGTCAATGGAACTTTCACGCAATTGTGAGAGCCAGATTTATCTTTCTTCTTATCAACTCA
GAAAGAATTACTCTCATATCACAGGTCTTAACTAGGACTAAGAGTTCAAGTTTCAGACCTGATATTAGTGCTCATATTTT
TCTGCATTTATTTTAGGCCTTCCGGTGTTATGTGTTCAATGAGGGAAGATGTTTCCGTCAACTATAAATGCGTCGGTGGC
GATTTTGTTAATTTCAAGATCTCAGAGGTTCTTATAAATATAACATGTGTGTGCGTGAGTTCATAAGGATGAGGGTATTG
CTGGTGTATGAGATGCAACTTTGGATTACTAGGGGAAAAAAT--GAACTAAAAGGACATGGCAATATCATAATCACGGAG
ACTATATCTAGTGGGAGACACG--GTGGGACCC-AACGAACAACATATTTTAACCTTTT---TATAAAGCACCAC-AAGA
AAATATCCACTTGCCAGGACGAAGA-AAAAATATCCATTTTTCAAGAGGCCGCCAAGAGCAATCGGGCAACCACCTTCAC
CTTGGTTAATTA----ACAACG-CCCCCGCTGACAGCTACTTAAGCCCTAATTAACAATCACAAAC-AACACCAAATCAA
AGCTTCCCATACACAA--TATA--CATA--GTGCGTGTAGCTATTAGGGTTCGAATTTGCATCTTCTTCTTTTTCTAGCT
TAGCGAGTGGAGTGGCGCCTC--------TTCTCCGCCTATAAATGCCACCCCTGGGCGAAGCCTTGTGGAGAGAAATCT
ACCACCGCTCTCCCTCTTCCTCCCGGCCTGCACACGCACAAGCAGCGA----------------GCCTTCCTCCTCCAGT
CCTCATCTTTCTGCCATGAAGCCCCCTCACTTCACCGGGGAGGCCGCCGCCGGCGCCTCCTGGGCTCACGAGGTCAAGCA
GGCCCTTCGTGACAAGCTCCGGTGGACACCCGCCGCGGGCACCACGGGCACCGGCGGCCACGGCGCCGCGAGGCCGCCGG
CGGCCTCCTCGGCTGTGACCGCCGAGCCGGTGGCGCAGCCGGCCCACGGCGCCGACTGCCGGGGCTTGGCCGCCGCCGAG
GACCCCATCAGGAGGGTCATGTTCTTGGCCCCCTGGGGCCACACATAAACGGAAAAAGCAAGTGCACGCGCGCACGGCCA
TGCCT-----TGGCCGGATCTGCAACTGCACCTCAACAAAAATATGGACTACTACGTACATATATATATGTGGCCGTATG
GACCATGAAC-------TGA---ACATGAACTCATCAAGGACCAATTAAAAACTGGGACTA----GATCGGGAGAAGAAG
AAGATGTGGTGCTTGAGTTATTTGTTCATTCATGTTTCTCTTGGGAGAGATGCATGCATGCATGCATGGGGAGATCTCGC
CCTGA----CGGGTTCGTGCATAACGGCGTTGATGGGTT--------------GTTGAAGCTGCGCAAG----AGCTGCA
GCTTTGTTGTAGCCATGAACCTGTTTTTC--GTTTCTCTCCAGAAATTCTGTACCAAGAGCCTGTGAAAAGCTATGTGTG
TATGAGA--CTATGAGCTAGT-AAAAAGAACTGTTCCTCCTTTCCATGGCATG-----TCTCTTCGGTTGTTCCTTGCCC
TGTTGGTTTCTTCTTTGCATCCAA---AACCATGGTGTTAATTCCTGCAATAT----GCAGAGGAAGAACCAGCCATGGT
TCTTAATTCTAGTATG------------------TGCTGGTGTG------------------GACTATGGGATGATCTTT
CTTCCTTGTCTTGTCCTTTTGATCTGGAAAAGGTTGTTGGGAACCAGCCTGGATCCTGG---------------------
----------------AGTTCATCATGCTTTT---CTTCAGGGTCCAGATCACAAGG-GAGGGTACTCTTTGTCATATGC
--------------------TTGTTGTGTGAGACCATGACATGAGCATCTTTTCCATGTCTCCTCGTCTGGAGAAGGTTG
TTGAAACG--------------------TGCTCATCAAAGACTAATGATCTGAGAAGTTCATGGCCTTCTTTCTCTCTG-
--------ATCATGGTATTTTAGAGGCAATAATTCACAAGTAAACAAATAAG----------AAAAAGGAAGGAGACTTT
GAATTCGATTCCTGTAAGA---AAACTAGTGGACTGAGAATCCTATTCCAGACAGGAAAGTG--GAAAAAAAGCCTCCCA
CTTGCAAGGACAGGCCAAACCTGGGTGGGCCAATCGCCTCGATCGCTTTCCACGACACCGTATCTTATCTTCAGAA----
-ATCCACGGAGAAATTGGCACTGATATTTGCAACAACAAATTAAAAAAAAGAGAAACATATATAACCAAGGTGCATGATA
GGCTTTGATTAAGACACCATATGTACATCGAGTTTGTTG
>chr5D_574
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-------------TGCAACTTTGGATTACC--GGGAAAAAACCCGAACTAAAAGGACATGGCAATATCAAAATCACGGAG
ACTATACATAGTGGGAGACATG--GCGGGACCGGAACGAACAACACTTT----CCTTTT---AATAAAGCATCACAAAGA
AAATATCCACTTGCCAGC---AAGA-AAAAATATCCATTTCTCAAGAGGCCACCAAGAGCAATCGGGCAACCACCTTCAC
CTTGGTTAATTAATTAACAACG-CCCCCGCTGACAGCTACTTAAGCCCTAATTAACAATCACCACCAAAAACCAAATCAA
AGCTTCCCATACACCCTGAATATACATATGGTGCGTGTAGCTATTAGGGTTCGAATTTGCATCTTCTTCT-TTTTTAGCT
TAGCGAGCGGAGTGGCGCCTC----CCACTTTTCCGCCTATAAATACCACCCCTGGGCGAAGCCTTGTGGAGAGAAATCT
ACCACCGCTCTCCCTCTCCCGGCCTG------CACTCACAAGCAGCGGCGAAGCCTTCTC---TGCCTTCCTCCTCCT--
CTC--TCTTTCTGCCATGAAGCCCCCTCACTTCACTGGGGAAGCGGCAGCCAGCGCCTCATGGGCTCACGAGGTCAAGCA
GGCCCTCCGTGACAAGCTCCGGTGGACACCCGCCGCGGGCACCACGGGCACCGGCGGCCACGGCGCCGCGAGGCCGCCGA
CGGCCTCCTCGGCTGTGACCGCCGAGCCGGCGGTGCAGCCGGCCCACGGCGCCGACTGCCGGGGCTTGGCCGCCGCCGAG
GACCCCATCAGGAGGGTCATGTTCTTGGCCCCCTGGGGCCACACATAAACGAGAAAAGCAAGTGCACGCACG----GCCA
TGCCTTGTCTTGGCCGGATCTGCAATTGCACCTCAACAAAAATATGGACTA----GTACGTATATATATGTGGCCGTATG
GACCATCAAC-------TGATGAACATGAACTCATCAAGGACCAATTAAAAACTGGGACTA----GATCGGG---AGAAG
AAGATGTGGTGCTTGAGGTATTTGTTCAT----GTTTCTCTT-GGAGAGATGCATGCATGCA----TGGGGAGATCTCGC
CTGAC----GGGTTTGGTGCATATATATGGCCTATGGGTGTTGCTGCCTGGCCGGTTGA--------------AGCTGCA
GCTTTGTTGTAGCCATGAACCTGTTTTTTTTGTTTCTCTCCAGAAAATCTGTACCAAGAGCCTGTGAAAAGCTATGTGTG
TATGAGAGACTATGAGCTAGC---AAAAAGTTCTTCCTCCTTCCCATGCCATG-----TTTATCCGGTTGTTCCTTGCCT
TGTTGGTTTCTCCTGTGCATCCAAAATAACCGTGGTGTTAATTCCTGCAATAC----GCAGAGGAAGAACCAGCCATGGT
GCTTAATTCTAGTATG------------------TGGTGGTGCTAATTTAAGTTGCTGGTGTGACTATGGATTGGTCTCC
CTTTA------TGTCCTTTTGATCTGGAAAAGGTTGTTGGGAACCAGCCTGGATCCTAGTCATGGAAGATACATGTTGAT
GATCCATGGATGAGGGAGTTCATCATGCTTTCCTGCTGCAAGGTCCAGATCACAAAGAGAGGGTACTCTTTGTCATATGT
TTGTTTGTTTGTTTGTTTGGTTGTTGTGTGAGAGCATG-----AGCATCTTTTCCATGTCTCCTGATCTGGAGAAGGTTG
TTGGAGACCAGCCTTAAACTGTGAAACATGCTCATCAAAGACTAATGATCTGAGAAGTTCATGGCCTCTCTCTCTCTCTC
--------ATCATGCTATTTTAGAGGCAATAATTCACAAGTAAACAAAAGAGAAGGAA---AAAAAAGGAAGGAGACTTT
GAATTCGATTCCTCTGTCCTGTAAACTAGTGGACTGAGAATCCTATTCCAGACAAGAAACAGAAAAAAAAAAGGCTCCCA
CTTGCAAGGACAGGCCAAACCTGGGTGGGCCAATCACCTTGCTCCCTTTCCACAACACCTTATCTTATCTTCAGATATGA
TATCCACGGAGAAATTGGCACTAATATTAGCAAAAATAA-----------------------------------------
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>chr5B_621
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--------------------------------------------------------------AATATCAAAATCACGGAG
ACTATATATAGTGGGAGACACGGTGTGGGACCCGAACGAACAACATTTTTTACCTTTTTATAAATAAAGCATCACAAAGA
AAATATCCACTTGCCAAGACGAAGAGAAAAATATCCATTTTTCAAGAGGCCGCCAAGAGCAATCGGGCAAC------CAC
CTTGGTTAATTA----ACAACGCCCCCCGCTGACAGCTACTTAAGCCCTAATTAACAATCACCACCAAAAACCAAATCAA
AGCTTCCCATACACAA--AATATACATA--GTGCGTGTAGCTATTAGGGTTCGAATTTGCATCTTCTT-T-TTTTTAGCT
CAGCGAGTGGAGTGGCGCACTGGCGCCTCTTTTCCGCCTATAAATGCCGCCCCTGGGCGAAGCCTTGTGGAGAGAAATCT
ACCACCGCTCTCCCTCTCCCTCCCGGCCTGCACACGCACAAGCAGCGGCGAAGCCTTCTCAGCTGCCTTCTTCCTCCTCC
CTC--TCTTTCTGCCATGAAGCCCCCTCACTTCACCGGGGAGGCCGCCGCCGGCGCCTCATGGGCTCACGAGGTCAAGCA
GGCCCTCCGTGACAAGCTCCGGTGGGCACCCGCCGCGGGCACCACGGGCACCGGCGGCCACGGCGCCGCGAGGCCGCCGA
CGGCCTCCTTGGCTGTGACCGCCGAGCCGGCGGCGCAGCCGGCCCACGGCGCCGACTGCCGGGGCTTGGCCGCCGCCGAG
GACCCCATCAGGAGGGTCATGTTCTTGGCCCCCTGGGGCCACACATAAACG-GAAAAGCAAGTGCACGCACGCACGGCCA
TGCCC-----TGGCCGGACCTGCAATTGCACCTCAACCAAAATATGGACTAC----TACATATATATATGTGGCCGTATG
GACCATGCATGAACTGATGATGAACATGAACTCATCAAGGACCAACTAAAAACCGGGACTAGATCGATCGGG---AGAAG
AAGATGTGGTGCTTGAGTTGTTTGTTCAT----GTTTCTCTT-GGAGAGATGCATGCATGCATGCATGGGGAGATCTCGC
CGTGACGGCCGGGTTCGTGCATATATATGGCCTATGGGTGTTGCTGGCCCTGGGTTGAAGCTGCGCAAGAGCTAGCTGCA
GCTTTGTTGTAGCCATGAACCTGTTTTTTC--TTTCTCTCCAGAAATTCTGTACCAAGAGCCTGTGAAAAGCTATGTGTG
TATGAGA--CTATGAGCTAGTTAAAAAAAACTCTTCCTCCTTTCCATGGCATGGCATCTCTCTCCAGTTGTTAATCTTGC
CCCAGTTGGTTTCTGTGCATCCAA---AACCATGGTGTTGATTCCTGCAATATATATGCAGAGGAAGAACCGGCCATGGT
GCTTAATTCTAGTATGCCGTGGTGCTAATAAGTTTGGTGGTGTG------------------GACTATGGAATGATCTTA
CTTTAAT-TCTTGTCCTTTTGATCTGGGAAAGGTTGTTGGGAACCAGCCTGGATCCTGGTCATGGAAGACAGACC-----
------------AGGAAGTTCATCATGCTTTC---CTGCAAGGTCCAGATCACAG-GAGAGGGTGCTCTTTGTCATATG-
---------------TTTGGTTGTTGTGTGAGAGCATG-----AGCATCTTTTCCATGTCCCCTGATCTGGAGAAGGTTG
TTGGAGACCAGCCTTGAACTGTGAAACATGCTCATCAAAGACCAATGATCTGAGGAGTTCATGGCCCCTCTCTCTCTCTC
TCTCTCTCATCATGCTATTTTAGAGGCAATAATTCACAAGTAAACAAAAAAGAAGAAGAAGAAAAAAGGAAGGAGACTTT
GAATTCGATTCCTCTGTTGTGTAAACTAGTGGACTGAGAATCCTATTCCAGACAAGAAAGAGAAGAAAAAAAGGCTCCCA
CTTGCAAGGACGGACCAAACCAGAGTGGGCCAATCACCTTGCTCCCTTTCCACAGCACCTTATCTTATCTTCAGATATGA
TATCCACGGAGAAATTGGCACTGATATTAGCAAAAAAT-----AATAATAGAGAAACAGATATAACCAAGGTGCATGATG
GGCTTTGATTATGACACCATATGTACATGGTGTTTGTTG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS----------------SSS---------S---------------------------S----------
-------S--------------------------------------S-----S---------S--------S--------
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--------------------------------------------------------------S-S----S----------
------------------S---------------------------------------------------S---S-----
-------------------------------S------------------------------------------------
-----------------S-----------------------------S-----------------------------SSS
-SSSS------------------------------------------------------S--------------------
------S------------------------------------------------------------------------S
------------------------------S-------------------------------------------------
---------------------------------------------------SS----------------S----------
-------------------------S--------------------------SSS-------------------------
------------------------------------------------------------------------SSS-----
-----------------------------SSSS---------S-------------------------------------
-S---------------------SSSSS-SSSSSS--S------------------------------------------
----------------------------S---------------------------------------------------
---------------------------S----S------------------------------S----------------
--------------S-----------------------------------------------------------------
S-----------------------------------S---------------------------------S--------S
---SSS-S------------------------------------------------------------------------
-------------------------------S-----S--S--------------S-----------------------S
---------------------------------S----SSSSS---------------------SS--------------
---S-SSS-----------------------------------------------------------SSS-SSSSSSSS-
--------------S---------------------------------S-------------------------------
-------------S-SSSS-----------------------------------S-----S------------S------
-----------------------------------S---S-S--S--------S-----S---------------S----
----------------------------S----S--S--SSSS--S--S---------S--------------------S
-----------S----------------S-S--------
>forward_296
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------------------------------------ACGCAATTGTGAGAGCCAGA------------------------
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>reverse_1712
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-------------------------------GATGGGTTGTTGAAGCTGCG-----------------------------
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