>input_sequence_77935
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-------------------------------------------------------------------ATGGAGTACTGCT
ACTCTTCGAAGCTGGCCTGGTCC---CTGGTCCTCGCCTTCGCCATGGCAGCCGCCATCACCTCGCCGTGCGCTGCCCAG
AACGCCCCGGCGGACTTCGTGAGCCTCCACAACTCTTCGCGCGCGCTTGTCGGCGTCGGGCCGGTGACATGGGACACCAC
GGTGGCGAATTACGCGCTGAGCTACGCGAACCAGCGCAAAGCCGACTGCAGCCTGGTGCACTCCGGCGGGACGTACGGGG
AGAACATCTTCTGGGGCTCCGCCGGCGGCACCTGGACGGCGTCGAGCGCCGTCACCATGTGGACCGACGAGAAGCAGTTC
TACGACTACGCCACCAACACCTGCGCGACCAACAAGGTGTGCGGCCATTACACCCAGGTGGTGTGGACGTCCTCCACGTC
CATCGGCTGCGCGCGCGTCGTCTGCGACAGCAACCGCGGCGTGTTCATCATCTGCAACTACAGCCTGCGGGGCAACATCG
CCGGACAGAAACCCTACTAG------------------------------------------------------------
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>chr7D_1_TraesCS7D01G099600
TATATGCAATGATGAATCCAATGATATATATTTTTTCTGGGAATCGGCTATCCCTGACTTTATTTCTCACTCCGTTGTAA
ATGATATCTAGTTTTTCTTTGGCTTGCTGTTAACAACAAGATTCTAACTTAGATATAATCTCAGTAAGATCAGTCAGCCA
TAACCTTGCGTTTGTTGTTCTTGAGGCCAGCATATGCTCCACCAGTTCTTCATCGATGGTCCTATATAATTCTATTAGAG
ATTGTTTTGTCTATTTTTACAGTTGTTTTAGAGAGTGGAGTTTTAGGGAATCTACTGGAAAATGGTATAGAACACGGTAA
AGTTACTAGCCGTTTTGCACTTGTGCTAGAGTACGTGCTAGAGTAGAGAGAAACAAGTAGACCC--TAATCATGTGAG--
-AACAATATAAGCTCCACCGCGCGCCTCTGCGTTCCCGGCCTCCGGGGGATCGACTTTCCCAACGAGGCAACGACTTATC
GATCTACGGTTTGTGCGGCAGCAAGTGGTTGCCCACTCGCCATTGATATA----TTAGCTTCCACAGTTTCTCTAGGTTG
GTCAATTACGCCATGGCTCGTGCATGCACAAATCTAGAGGAACGCATCATGCATGCATGCACCGTTCAATTACTGACGGA
CGGGTAATATATCCGGACCAGAAATCCTAATCACCAGATGCATGCAT-----------GCACGTACGAATGGAGACCGA-
--ACGGCCGGATGAAGTAAACTCTCCAAAAGTCCACTTCCC-TTTCACAACTCCAAGCAACGCTCAGTGTACCCTTAGTA
TCCATTCGTTGGCGTCAATATGGAGCTTGATCTTGCCCCTCTTGGACAAAAATTCAGTTCTACTCGATTGACCAGGTATT
TAACTTTTACCTATACCTTGGAGAAGTCGCACGTCGAGCTAGTTTTCTAGCTCTATAAATACC-ACTAGCCTCAACTCAC
ACTGGCATCACAACCTACCGGCCTAAT--CACACACATCATCTTGTGCAAAGGTCGAACAATTAGCGATGGAGTACTGCT
ACTCTTCGAAGCTGGCCTGGTCC---CTGGTCCTCGCCTTCGCCATGGCAGCCGCCATCACCTCGCCGTGCGCTGCCCAG
AACGCCCCGGCGGACTTCGTGAGCCTCCACAACTCTTCGCGCGCGCTTGTCGGCGTCGGGCCGGTGACATGGGACACCAC
GGTGGCGAATTACGCGCTGAGCTACGCGAACCAGCGCAAAGCCGACTGCAGCCTGGTGCACTCCGGCGGGACGTACGGGG
AGAACATCTTCTGGGGCTCCGCCGGCGGCACCTGGACGGCGTCGAGCGCCGTCACCATGTGGACCGACGAGAAGCAGTTC
TACGACTACGCCACCAACACCTGCGCGACCAACAAGGTGTGCGGCCATTACACCCAGGTGGTGTGGACGTCCTCCACGTC
CATCGGCTGCGCGCGCGTCGTCTGCGACAGCAACCGCGGCGTGTTCATCATCTGCAACTACAGCCTGCGGGGCAACATCG
CCGGACAGAAACCCTACTAGCTACTGTACATATATACTATATGCCTTAATTTCTTCACGCATGTCATGTTGTTTGACAAA
AATAATGGGGGTAACGCATGCTCATGAACCTACAATTCATGCATGTACGTACTTATGCCCCATGGAATAAGCTGTGATCT
ATCTATTGTTCTTATATAATACTACTACTACTCTATTCATGCATGTATAAGTATGCCCCATGGAAAATTCTGTGATCTAC
TATTATTGTTCTTATATATAATTCCGATGAAGTAATGATATGACGTTTATCCTCAAAAAAATATATGACATTTGTTGTAT
CTTAAATTCTTTTTTCAAGAGTACGTCAATTGCGTACCTTATCTTTATAGAAGGAGAGAAACAAGTTTTTACAAGATATC
CACGAACGATGCGAACATCCTCGAGGACACACCCACACCAACAAAAAATTACAACACTACTCTCTCACAAAACGTAGAAG
CCCTCCCACACCAACTCCGGCCTCCCTCCAGAGCTTGATTTCGTCAAGGATCTGTAAAGCAAGGCTTGCTGGGGATCTGA
TTTGATCGTTCCTGTTGAAAACCTTTGCGTTACTTTGCTTCCACGAGTTCCAAATTGTGGCAATGATCATGGTGTCAAGA
CCCCTTTTGTCCTGCCTCGCAAAGCCCATCCTGCACCCCATCCACCACTCAACCAACGTATCTGTTTCAGTAGGCAGGTT
TACGTTGAATTTTTTTTTTTTTTTGCAGGTAACTTCGGCATGGTCTCTGATGGACAGCAAAGCAACGCCTAGGCAATGGC
ACTGGATATATCTATGACGAAATGACTTGACTTACAGGAGTTTTCACCAAAGATGTGCGATCGTCTATGACGAATCTTTT
TTGTTTAGATGTATGTGCTTCACACTCCGTGGCGTGACGAATCTGGTTATATAGTTGTTTGCTTTATCTATAGAGCAGGG
CGAAAGCCTATTTCGAGAGAGCGATAAGGCACGCTAAGGAAATTACTTCTCTCTATTCTG
>chrUn_89
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--------TAGTTTTTGTTTGGCTTGCTGTTAACAACAAGATTCTAACTTAGAGATAATCTCAATAAGATCAGTCAGCCA
--ACCTTGCGTTTGTTGTTCTTGAGGCCAGCATATGCTCCACTAGTTCTTCATCGGTGGTCTTATA--ATTCTATTAGAG
ATTGTTTTCTCTATTTTGACAGTTGTTTTAGAGAGTGAAGTTTTAGGGAATCTACTGAAAAATGGTATAGAACACGGTAA
AGTTACTAGCCGTTTTGCCCTTGTGCTAGA----GTGCTATAGTAGGGAGAAACAAGTAGACCCCCTAATCATGTGAGCA
AAAAAATATAAGCTCCAC----CGCCTCTGCGTTCCCGGCCTCCGGGGGATAGACTTTCCCAACGAGGCAACGACTTATG
GATCCACGGTTTGTGCGGCAGCAAGTGGTTGCCCACTCGCCATTGATATACGTATTAGCTTCCATAGTTTCTCTAGGTTG
GTCAATTACGCCATTGCTCGTGCGTGCACAAATCTAGAGGAACGCATCATGCATGCATGCACCGTTCAATTACTGACGGA
CGGGTAATATATCCGGACCAGAAAGCCTAATCACCAGATGCATGCATGGTGCATGCATGCACGTACGAACGCAGACTGCT
GGACGGCCGGATTAAGTAAACTTTCCAAAAGTCCACTTCCCTTTTCACAACTCCAAGCAACAACCAGTTTACCCTTAGTA
TCCATTCGTTGGCGTGCATATGGAGCTTGATCTTGCCCCTCTTGGACAAATATTCAGTTCTACTCGATTGACCAGGTATT
TAACTTTTAGCTATACCTTGAACAAGTCGCACGTCGAGCTAGTTTTCTAGCTCTATAAATACCAACTAGCCTCAGCTCAC
ACTGGCATCACAACCTACCGGCCTAATCACACACATATCATCTTGTGCAAAGATCGATCAACTAGCGATGGAGTGCTACT
ACTCTTCGAAGCTAGCCTGGTCCCAGCTGGTCCTCGCCTTGGCCATGGCAGCCGCCATCACCTCGCCGTGCGCTGCCCAG
AACGCCCCGGCGGACTTCGTGAGCCTCCACAACTCTTTGCGTGCGCTTGTCGAAGTCGGGCCGGTGACATGGGACACCAC
GGTGGCGAATTACGCGCTGAACTATGCGAACCAGCGCAAAGCCGACTGCAACCTGGTGCACTCCGGCGGGACGTACGGGG
AGAACATCTTCTGGGGCTCCGCCGGCGGCACCTGGACGGCGTCGAGCGCCGTCACCATGTGGACCGACGAGAAGCAGTTC
TACGACTACGCCACCAACACCTGCGCGACCAACAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGAGGTCCTCCACGTC
CATCGGCTGCGCCCGCGTCGTCTGCGACAGCAACCGCGGCGTCTTCATCATCTGCAACTACAGCCCGCGGGGCAACATCG
CCGGACAGAAACCCTACTAACTAGCTACATTTATA--TATATGCCTTAATTTCTTCACGCATGTTATGTTGTTTGACAAA
AACAATGGGGGTAACGCATGCTCATGAATCTA------------------------------------------------
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>chrUn_89
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--------TAGTTTTTGTTTGGCTTGCTGTTAACAACAAGATTCTAACTTAGAGATAATCTCAATAAGATCAGTCAGCCA
--ACCTTGCGTTTGTTGTTCTTGAGGCCAGCATATGCTCCACTAGTTCTTCATCGGTGGTCTTATA--ATTCTATTAGAG
ATTGTTTTCTCTATTTTGACAGTTGTTTTAGAGAGTGAAGTTTTAGGGAATCTACTGAAAAATGGTATAGAACACGGTAA
AGTTACTAGCCGTTTTGCCCTTGTGCTAGA----GTGCTATAGTAGGGAGAAACAAGTAGACCCCCTAATCATGTGAGCA
AAAAAATATAAGCTCCAC----CGCCTCTGCGTTCCCGGCCTCCGGGGGATAGACTTTCCCAACGAGGCAACGACTTATG
GATCCACGGTTTGTGCGGCAGCAAGTGGTTGCCCACTCGCCATTGATATACGTATTAGCTTCCATAGTTTCTCTAGGTTG
GTCAATTACGCCATTGCTCGTGCGTGCACAAATCTAGAGGAACGCATCATGCATGCATGCACCGTTCAATTACTGACGGA
CGGGTAATATATCCGGACCAGAAAGCCTAATCACCAGATGCATGCATGGTGCATGCATGCACGTACGAACGCAGACTGCT
GGACGGCCGGATTAAGTAAACTTTCCAAAAGTCCACTTCCCTTTTCACAACTCCAAGCAACAACCAGTTTACCCTTAGTA
TCCATTCGTTGGCGTGCATATGGAGCTTGATCTTGCCCCTCTTGGACAAATATTCAGTTCTACTCGATTGACCAGGTATT
TAACTTTTAGCTATACCTTGAACAAGTCGCACGTCGAGCTAGTTTTCTAGCTCTATAAATACCAACTAGCCTCAGCTCAC
ACTGGCATCACAACCTACCGGCCTAATCACACACATATCATCTTGTGCAAAGATCGATCAACTAGCGATGGAGTGCTACT
ACTCTTCGAAGCTAGCCTGGTCCCAGCTGGTCCTCGCCTTGGCCATGGCAGCCGCCATCACCTCGCCGTGCGCTGCCCAG
AACGCCCCGGCGGACTTCGTGAGCCTCCACAACTCTTTGCGTGCGCTTGTCGAAGTCGGGCCGGTGACATGGGACACCAC
GGTGGCGAATTACGCGCTGAACTATGCGAACCAGCGCAAAGCCGACTGCAACCTGGTGCACTCCGGCGGGACGTACGGGG
AGAACATCTTCTGGGGCTCCGCCGGCGGCACCTGGACGGCGTCGAGCGCCGTCACCATGTGGACCGACGAGAAGCAGTTC
TACGACTACGCCACCAACACCTGCGCGACCAACAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGAGGTCCTCCACGTC
CATCGGCTGCGCCCGCGTCGTCTGCGACAGCAACCGCGGCGTCTTCATCATCTGCAACTACAGCCCGCGGGGCAACATCG
CCGGACAGAAACCCTACTAGCTACATATAT--------------------------------------------------
-ATAATGGGGGTAACGCATGCTCATGAACCTATGATTCATGCATGTACGTACTTATGCCCCATGGAATAAGCTCTGAT--
-------------------------------------------------------------------------------C
TATTATTGTTCTTATATAATCTGATAAACTCTATACA-------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS--------S------------------------------------S---------S----------------
SS----------------------------------------S------------S-----S----SS------------
--------S--------S-------------------S-------------------S----------------------
------------------S-----------SSSS------S-----S---------------------------------
---S--------------SSSS-----------------------------S---------------------------S
----S-----------------------------------------------------------S---------------
--------------S--------S--------------------------------------------------------
------------------------S--------------------------------------------S-S----S-S-
------------S---------S--------------------------------------SSS----S-----------
---------------SS---------------------------------S-----------------------------
---------S----------S-S---------------------------------------------------S-----
-----------------------------------S----------------S----S---S------------S--S--
-------------S--------------------------S---------------------------------------
-------------------------------------S---S----------SS--------------------------
--------------------S---S-------------------------S-----------------------------
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-----------------------------------------------S-----S-------------S------------
------------S-----------------------------S----------------------S--------------
------------------------SSSSSS-SSSSSS---------------------------S---------------
--------------------------------SS---------------------------------------S----SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
------------------SSS-SSSS-SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_717
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---------------------------------------------------------TGCACGTACGAATGGAGACC---
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>reverse_1920
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-------------------------------------------------------------------------------C
CACGAACGATGCGAACATC-------------------------------------------------------------
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