>input_sequence_77929
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-------------------------------------------------------------------------------A
TGGCGGCAAGAAGGCTCCTCGAGGAGGCGGTCGCCGCCGGCGCGCAGCAGGACTCGCTCAACTCGGACCTGGTCCTCATC
CTCGCCGGCCTGCTCTGCGCGCTGGTCTGCGTCCTCGGCCTCGGCCTCGTGGCGCGGTGCGCGTGCTCGCGCCGCTGGGC
CAGGGCCGCAGA---CGCCCCGCCCGGCGCCAACAGGGGCGTCAAGAAGGAGGTGCTGCGCGCCCTGCCCACCGTCAGGT
ACGTCGCCGACGGCGGCGAGGCGTCGGAGTCGGACGAGTGCGCCATCTGCCTCGCCGAGTTCGAGGACGGCCAGGACATG
CGGGTGCTGCCGCAGTGCAGCCACGCGTTCCACACGGCCTGCGTCGACGCCTGGCTGCGCTCGCACTCCTCGTGCCCGTC
GTGCCGGCGGGTGCTCGTCGCCGAGCTGCCGCGCGGCGAGCGGAGCGGACGCTGCGGCGCGCGGCCCGGCGGCCTCGACG
CGCTCCTCAAGGCCGTGCCGCTGTGCCGCTGA------------------------------------------------
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>chr6B_1_TraesCS6B01G288700
CGACCTAACGCCAAAAGTCAATAGTACGCAGGGGA-ACGTGGAGGCGGGCAGTAGCTGAGTGACAGGTAGCAAACACCA-
ACCGAAAGTCTGTGTACCACACC-GGAGTGCTGCTCGTGCGGCCCCAAACAAGGCCACCTGTCCCCTCCCTAACCCCGTT
GCTACAAGATGGGTTTCGTTGCTCGGATAAGTCAAGGTTTTAACATTGTTTT-------CTCTAGTATAAAGTACGACTA
TTACGACGACTAATACGTCCGTCAATTGACCGTAGAAGTGGTGCATGACATAATTGAA----------------------
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-------------------------------------------------ACTCGGAATCTTGAGTGGCATATGGACGGCT
TGGTTGGG------------TGATGCAGAGGCCGATGGATGTCCTCCTTTTTTTTTCAAAAATGGACATTTTTTTTTGAG
CTTTTAGTGGGATATATTTTAATTTCTGTACATGGATTACTTACAATTTCAAAAGAAAAACTCTATATTTTGTTTAAATG
TATGATACCATGTCTAATTTCCTCTACATGGATTACTTTTACCACACATATACACCTTG-TTTCTCTACGACCCTAACAT
CCTAGTTTCCTGGCGGCCTTGCTCATGTTGACCTAGTAGAAAGATTAAAAAAACAAGTCACACTTAGATGAGTGACTCTT
GTTAAGACATGTGCTGAAAGAGAGCACTACGGTGACCATATTAAGCCGTGTGGCAACACTGAGTGACGAAGTATTGGAAC
CC-AAAGGGCAAAGGAGGATCCACTTTCAAGTTCCAACTTCCAAACGAACCACTCCACTGACCTACTAGGC---------
CTACGACCCGCCCGTGCTCATTCTTCGCATTTTCCTCAAGACCAAAAGCCGACGATCGCCTCCCCCCACGATCTCTATAT
AAGCCAGCGACCCAGCGCCTCCCATCACACACTTCTTCCACGC-TTCCTCCCCCGAGCTACGACGACGACTA-------G
CCAGCCAGCTACTCCTCCGCGCGCAAGCCACAAGCCAGCGGCGAAGCTCGTGAACTC-----TC--CCGGTGCCCAGACA
TGGCGGCAAGAAGGCTCCTCGAGGAGGCGGTCGCCGCCGGCGCGCAGCAGGACTCGCTCAACTCGGACCTGGTCCTCATC
CTCGCCGGCCTGCTCTGCGCGCTGGTCTGCGTCCTCGGCCTCGGCCTCGTGGCGCGGTGCGCGTGCTCGCGCCGCTGGGC
CAGGGCCGCAGA---CGCCCCGCCCGGCGCCAACAGGGGCGTCAAGAAGGAGGTGCTGCGCGCCCTGCCCACCGTCAGGT
ACGTCGCCGACGGCGGCGAGGCGTCGGAGTCGGACGAGTGCGCCATCTGCCTCGCCGAGTTCGAGGACGGCCAGGACATG
CGGGTGCTGCCGCAGTGCAGCCACGCGTTCCACACGGCCTGCGTCGACGCCTGGCTGCGCTCGCACTCCTCGTGCCCGTC
GTGCCGGCGGGTGCTCGTCGCCGAGCTGCCGCGCGGCGAGCGGAGCGGACGCTGCGGCGCGCGGCCCGGCGGCCTCGACG
CGCTCCTCAAGGCCGTGCCGCTGTGCCGCTGACGTCGCTGTAGCTCGGCATTAGTGGCGTGCGCACTCTGGACAAAAGGC
CAAGGGAAAAGTGTGTCGAGGGAAATTAGCCGGTGCATAAGCTCA----TCGGTTAGCTTCTTATTTACCTTTCTCTTGG
CTTGGGGGCCTGCTGGGTGTTGATTCTTTTTAGGTGTGGCTACTCTGGAAATGGGAACCATTGAGCATGAAGGCGTGTGT
ACATACATAGTTGATGGGGGGATTTGTGATTGTAACCTATTTGTACATATGTGGAAGTTGCTATAAAAACATGCACTT-G
CTTGAACTGGGAATGTGAATT------------------------------TGGAACTA---------------------
----------GGAAATGGCATAAGAATTTGCT-AAAGACATCTATACTGAAAACTGCCCGTGAGTATAACTCTGGCGAAA
CTTGTGGACGC---------------------------------------------------------------------
-----------------GCTTGGAAATATCTTAAATGATAAATCTTATTTGTAACCCTATCTTTTTATATATTTATTTTG
CACCAAGAAAATCTGAAACAATTTATGCATAGCGCAGTACTC--GTGTGTTATCGACAGGTAAAGTTTCAAGTTTAAATG
TAATTTTGTTTAAGA--AAAAAAAGATA--TTTCTTTTAAAAGAAAGGGGTTTCCCCAAGCCTCAACTTTTATCAAAAGG
TGGTGCAATAAACATTCAAACCGTTTCACAACGCTCGGCTACAACTAGAGTACTGCAACATACAAATTACAAACGCAAAG
TGCCAACATAGCAACAGTCACACATAACACATCATCCACAAGGTATGAATGCAACCTAGATAGCAAACAAAAGTATCAAC
ACTATCACATCCTAGCAGATTTTACGCAAACTAGTTGGTGTTGAGGCGAACAATCTACTTATGTTGATCATCCGTGACAT
CCAATGGCAGGGTTAGGTCCAAGAGATCCTGAACGACTCCTCCCGATGATGATCGAGAAGCAGAAGACATCGCACGAGAA
GGGTAGACTGAGCACCATCGATATAATT-TTTCATTGATAAAGACATGTGCTCAGCTTGTCCAGAATGTTGT
>chr6A_1
CGACCTAACGCCAAAAGTCAATAGTACGCAGGGGGGACGTGGAGGCGGGCAGTAGCTGAGTGACAGGTAGCAAACGGCAC
ACCGAAAGTCTGTGCACCACACC-GGAGTGCTGCTCGTGCGGCCCCAAACCAGGCCACCTGTCCCCTCCCTAACCCCGTT
GCTACGAGATGGTTTTGGTTGCTCGGATAAGTCAAGGTTTTAACATTGTTTTTCTCTGTCTATAATGTAAAGTACGACTG
ATACAACGACTAATACGTCCGTCAATTGACTGTAGAAGTGGTGTATGACATAATTG-A----------------------
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-------------------------------------------------ACTCGGAATCTCGAGTGGCATATGGACGGCT
TGGTTGGG------------TGATGCATAGGCCGATGGTTATCCTCCTTTTTTGAAAAATG------GGCATTTTTTGAG
TTTTTAGTGACATATATTTTAATTTCTTTACATGGATTGTTTACAATTT--TAAAAAATACTTCATAATTTGTTCAAGTG
CGTGATGCTATGTCTAATTTCCTCTACATGGATTACT--------ACATATACACCTTG-TTTCTCTACGACCCTGACAT
CCTAGTTTCCTTGAGGTCTTGCTCATGTTGACCTAGTAGAAAGATTAAAAAAAGAAGTCACACTTAGATGAGTGACTCTT
GTTAAGACATGTGCTAAAAGAGAGCACTACGGTGGCCATATCAAGCCGTGTGGCAACACCGAGTGACGAAGTATTGGAAC
CCCAAAGGGCAAAGCAGGATCCACTTTCAAGTTCCAACTTCCAAACGAACCGCTCCACTGACCT-----GC---------
CTACGACCCGCCCGTGCTCATTCTTCGCATTTTCCTCAAGACCAAAAGCCGACGATCGCCTCCCCGCGCCATCTCTATAT
AAGCCAGCGACCCAGCGCCTCCCATCACACACTTCCTCCACGC-TTCCTCCCCCGAGCTACGACGACGACCATCGACTAG
CCAGCCAGCTGCTCCTCCGCGC---------AACCCAGCGGCGAAGCTCGTGAGCTCAGCTCTCTCCCGCTGCCCGGACA
TGGCGGCGAGAAGGCTCCTCGAGGAGGCGGCGGCGGCCGGCGTGCCGCAGGACTCGCTCAACTCGGACCTGGTCCTCATC
CTCGCCGGCCTGCTCTGCGCGCTGGTCTGCGTACTCGGCCTCGGCCTCGTGGCGCGGTGCGCGTGCTCCCGCCGCTGGGC
CCGCGCCGCGGACGCCGCCCCGCCCGGCGCCAACAGGGGCGTCAAGAAGGAGGTGCTGCGCGCGCTGCCCACCGTCAGGT
ACGCCGCCGACGGCGGCGAGGCGTCGGAGGCGGACGAGTGCGCCATCTGCCTCGCCGAGTTCGAGGACGGCCAGCACATG
CGGGTGCTGCCGCAGTGCAGCCACGCGTTCCACGCGGCCTGCGTCGACGCCTGGCTGCGCTCGCACTCCTCCTGCCCGTC
CTGCCGGCGGGTGCTCGTCGCCGAGCTGCCGCGCGGCGAGCGGAGCGGCCGCTGCGGCGCGCGGCCCGGCGGCCTCGACG
CGCTCCTCAAGGCGGTGCCGCTGTGCCGCTGACGTCGCTGTAGCTCCGCATTAGTGGCGTGCGCACTCTGGACGAAAGGC
CAAGGGAAAAGTGTGTCGAGGGAAATTAGCCGGTGCATAAGCTCA----CCGGCTAGCTTCTTATTTACCTTTCTCTTGG
CTTGGGGGCCTGCTGGGTGTTGATTCTTTCTAGGTGTGGCTACTCTGGAAATGGGAACCATTGAGCATGAAGGCGTGTGT
ACATACATATTTGATGGGGGGATTTGTGATTGTAACCTATTTGTACATATGTGGAAGTTGCTATAAAAACATGCACTTGG
CTTGAACTGGGAATGCGAATT------------------------------TGGTTGTACTTTCTGGTTGTGTCTCCCGG
TTGGAACTAGGGAATTGGCATAAGAATTTGCT-AAAGACATGTATACTGAAACGGTCCGT--AGTATAACTTTGGCGAAA
CTCGTGGATGAGCGTGCATGTGCATCACTGGGAGTGTCCTAGTTTTGCATCCAGATTTGTACTACACTGTAAAAAGGTGT
TTTCTAATTTTTTTAGTGCTTGGAAATATCTTAAATGATAACTCTTATTCGTAATCCTATCTTTTTATATATTTATTTTG
CACCAAGAAAATCTGAAACAATTTATTCATAGCGCAGTACTC--GTGTTGTT--GACAGGTAAAGTTTCAAGTTTAAATG
TAATTTTGTTTAAGAAGAAAAGAAAAGA--TTTTTTTTAAAAGATGGGGGTTTCTCCCAGCCTCAACTTTTATCAAAAGG
TGAGGCAATAAACATTCAAACCGTTTCACAATGCTCGGCTACAACTAGAGTACTGCAACAGACAAATTACAAACGCAAAG
TGCCAACATAGCAACGGTCACACATAACACATCATCCACAACCTATGAATGCAACCTAGATAGCAAACAAAAGGATCAAC
ACTATCACATCCTAGCAGATTTTACGCAAACCAGTTGGTGTTGAGGCGAACAATGTACTTCTGTTGATCATCCGTGGCAT
CCAATGGCAGGGTTAGGTCCAAGAGATCCTGAACGACTCCTCCTGGTGATGATTGAGAAGCAAAAGACATCGCACGAGAA
GGGCAGACTGAGCATCATCGCATATAATCTTTCATTGATGAAGACATGTGCTCAGCTTGTCCAGAAT-----
>chr6D_1
CGACCTAACGCCAAAAGTCAATAGTACGCAGGGGA-ACGTGGAGGCGGGCAGTAGCTGAGTGACAGGTAGCAAACGGCAC
ACCGAAAGTCTGTGCACCACACCCGGAGTGCTGCTCCTGCGGCCCCAAACCAGGCCACCTGTCCCCTCCCTAACCCCGTT
GCTGAGAGATGGGCTTGGCTGCTCGGATAAGTCAAGGTCTTAACATTGTTTT-------CTCTAGTATAAAGTACGACTA
TTACGACGACTAATAC--CCGTCAATTGACCGTAGAAGTGGTGCATCACATAATTGAAACTCAGAATCTCTTTTTTTTTT
CCGGCAATGCTACATCAACGGAGTCTTACGGGCCTTTTACAGGGTAAATTTGAGGTGGCCATCTATGATTGGACCAAATG
GGGAGGGAGGGCCCCACCCCCTAAAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTAGCTGGAAGGTCCGTGAATTC
CCCCTAATGAGCCCGTTGATGTAGCATTTTTGCTTTTTTTTAGGATCGAACTCGGAATCTCAAGTGACATATGGACGTTG
GCTTCGTTGGGTGTGTCATATGATGTAGAGGCGGATGGTTATCCTTCTTTTC-GAAAAAGG------ATATTTTTTTGAG
CTTTTAATGGCATATA-TTTAATTTCTCTACATGGATTACTTATAATTT--AAAAAAATACTTTATAATTTGTTCAAATG
TATGATACTATGTCTAGTTTCCTCTACATGGAATACATTTA-------TATACACCTTATTTTCTATACGACCATGACAT
CCCAGTTTCCCGGCGGCCTTGCTCATGTTGACCTAGTAGAAAGATTTAATAAAGAAGTCACACTTAGATGAGTGACTCTT
GTTAAGACATGTGCTAAAAGAGAGCACTACGGTGACCATATTAAGCCGCGTGGCAACACTGAGTGACGAAGTATTGGAAC
CCCAAAGGGCAAAGGAGGATCCACTTTCAAGTTCCAACTTCCAAACGAACCACTCCACTGACCT-----GCCTACTAGGC
CTACGACCCGCCCGTGCTCATTCTTCGCATTTTCCTCAAGACCAAAAGCCGACGATCGCCTCCCCACACCATCTCTATAT
AAGCCAGCGACCCGGCGCCTCCCATCACACACTTCTTCCACCCTTTCCTCCCTCGAGCTACGACGACGACTATCGACTAG
CTAG------------------------------CCAGCGGCGAAGCTCGTGAGCTC-----TCTCCCGGTGCCCGGACA
TGGCGGCGAGAAGGCTCCTCGAGGAGGCGGTGGCCGCCGGCGCGCAGCAGGACTCGCTCAACTCGGACCTGGTCCTCATC
CTCGCCGGCCTGCTCTGCGCGCTGGTCTGCGTCCTCGGCCTCGGCCTCGTGGCGCGGTGCGCGTGCTCGCGCCGCTGGGC
GCGCCCCGCGGACGCCGCCCCGCCCGGCGCCAACAGGGGCGTCAAGAAGGAGGTGCTGCGCGCGCTGCCCACCGTCAGGT
ACGCCGCCGACGGCGGCGAGGCGTCGGAGGCGGATGAGTGCGCCATCTGCCTCGCCGAGTTCGAGGACGGCCAGCACATG
CGGGTGCTGCCGCAGTGCAGCCACGCGTTCCACGCGGCCTGCGTCGACGCCTGGCTGCGCTCGCACTCCTCCTGCCCGTC
CTGCCGGCGGGTGCTCGTCGCCGAGCTGCCGCGCGGCGAGCGGAGCGGACGCTGCGGCGCGCGGCCCGGCGGCCTCGACG
CGCTCCTCAAGGCGGTGCCGCTGTGCCGCTGACGTCGCTGTAGCTCGGCATTAGTGGCGTGCGCACTCTGGGCAAAAGGC
CAAGGGAAAAGTGTGTTGAGGGAAATTAGCCGGTGCATAAGCTCATCCATCGGTTAGCTTCTTATTTACCTTTCTCTTGG
TTTGGGGGCCTGCTGGGTGCTGATTCTTTTTAGGTGTGGCTACTCTGGAAATGGGAACCATTGAGCATGAAGGCGTGTGT
ACATACATATTTGATGGGGGGATTTGTGATTGTAACCTATTTGTACATATGTGGAAGTTGCTATAAAAACATGCACTTAG
CTTGAACTGGGAATGTGAATTTGGTGGTACTTTCTGCTTATTTCTCACGATTGGAACTA---------------------
----------GGAAATGGCATAAGAATTTGCTGAAAGACATCTATACTGAAAACTGCCCGTGAGTATAACTTTGGCGAAA
CTTGTGGACGC---------------------------------------------------------------------
-----------------GCTTGGAAATATCTTAAATGATAAATCTTATTTGTAATCCTATCTTTTTATATATTTATTTTA
CACCAAGAAAATCTGAAACAATTTATGCATAGCGCAGTACTCGTGTGTTGTT--GACAGGTAAAGTTTCAAGTTTAAATG
TAATTTTGTTTAAGAAGAAAAGAAAAGATATTTCTTTTAAAAGAAAGGGGTTTC-CCCAGCCTCAACTTTTATCAAAAGG
TGAGGCAATAAACATTC-AACCGTTTCACAACGCTCGGCTACAACTAGAGTACTGCAACAGACAAATTACAAACGCAAAG
TGCCAACATAGCAACAGTCACACATAACACATCATCCACAACCTATGAATGCAACCTAGATAGCAAACAAAAGGATCAGC
ACTATCACACCCTAGCAGATTTTAAGCAAACTAGTTGGTGTTGAGGCGAACAATCTACTTATGTTGATCATCCGTGGCAT
CCAATGGCAGGGTTAGGTCCAAGAGATCCTGAACGACTCCTCCCGGTGATGATCGAGAAGCAGAAGATATCGCACGAGAA
GGGCAGACTGAGCACCATCGATATAATT-TTTCATTGGTGAAGACATGTGCTCAGCTTGTCCAGAATG----
>SNPs
---------------------------------------------------------------------------SS---
--------------S-----------------------------------S-----------------------------
-----S----------S---------------------------------------------------------------
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------------------------------------------------------------S-------------------
--------------------------------------S-S------------SSSS--SSSSSSSS--S----------
----------S----------------S---------------------SS---S---S---S----S------S-----
--------S--------------------------------SSSS------------------------------S----
-----------------------------------------------------S--------------------------
---------------S----------------------------------------------------------------
----------------------------------------------------------------SSSSS-----------
-----------------------------------------------------------------S---S----------
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----------S-----------SSSSSSSSS--S-------------------S---------------------S----
-------S-----------------------S------------------------------------------------
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-S-S-----S-----------------------------------------------------S----------------
---S-------------------------S--------------------------------------------S-----
---------------------------------S-------------------------------------S--------
S-------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
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---------S----------------------------------------------------------------------
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-----------------------------------------------------------------------S--------
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------------------------------------------------------S-------------------------
------------------------------------------------SS-SSS--------------------------
---------------------S--S-S---------------------------S--S----------------------
--SS--------------------------------------------------------S-------------------
-----------------------------------------SS------------------------------S------
----------------------------------------------------------------------------S---
---------------------------------------------S----------------------------------
---S-----------------------------------S----------------------------SSSS
>forward_166
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------------------------------------------------------------------TCCCTAACCCCGTT
GCTACA--------------------------------------------------------------------------
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>reverse_2472
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-----------------------------------------------------------------------CTGGCGAAA
CTTGTGGACG----------------------------------------------------------------------
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