>input_sequence_77911
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--------------------------------------------------------------ATGCGGAGGTCGGACTGG
GAGGACCGGTGCCGGCGGCACCCGGAGCACCGGCTGTCCAAGGGCGTGTGCCCGAGCTGCCTCCGCGACCGCCTCGCCCA
CCTCTCCGCCAACTCCTCCGCCACCACCACCCTTACGCGCGCCTCCAACTCGGCCAGCACCTCCCCCTACTCCTCCACCG
ACTCCCCGCCGCTCCACCGCGCGGCCCTCTCCGCCGACGCCACCTCCGTCCACGTCGTCGGCTCCGGGGCCGGCTCCTCC
TTCGTCAACGTCTCCGCCTTCTCGCAGCCGCTCATGCCGACGGCCTCAAAGAAACCAGCAGAAGCCAAGGGAAAGGAGGG
CGAGGCGAAGAAGAAGAAGAAGAGCAGCAGCAAGAAGAAGATCGGGCGGTTCCTGTCGAGGCTGGTCGGGACGGAGAAGC
GGCGGAAAACAGGGGAAGCAGGCGACGGCGGCGAGCTCTTCCATTCCAGCACCATGAAGGAGAAGTCGTCGACCAAGTGG
GTCTTCTTTTGA--------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G405900
GCCACCGCCTCGCCGAGTTACATAGCCAATGACTTTCCCGCTTCGCGGGGGCGTAGGCCATGGCAACCGTCTTCCTCGCC
CAAAAACCAACTCTGATATGTGCTTCGCGACAGCAGAGGAAGGCTACTCTTCCTTGTCGCTGAAGCATGTCTCTATATCC
CTCTATAGCTTACGGCAATCCGATGAATGGGCTGCCGGGTATAGAAAGATATGTCCGGAGAATGAAGATCCGCCGCGGCC
GGCTATTAACTAGTTTTGGCTAGTCCGCTATAGTTTATTTAAAATATCTCTGAATTGCAAATATCGTCTGGTTTATACAA
AAATCATCTGATTTGCATTAGTTTCGTATCGTTTGTTTAAATCCGGTTCAAATTATATGTAGATATCTGTGGATAGCTGG
CTCCCGCATCATGTCCTTGGACTGGTCTCTCGGTCCGTGGACGGATGCGTGTCCGGCTTAGAGGTCGACGTTGTAGATGC
CCTTACTTTCCATACAATGAGAGCAAGAAAACATGAATATGTCCTTAAACCATACC--GAAAAAGTGATATCACTCTCAT
TTGCGTTGAGGAATCAAATCATGTCGGCTTTCACTGTGACCTTGTTGTCCTTGGCAAATTCTACTATGGCCGCTACAGTT
CCAACACCAAAAATCCTTTACCCTAAAAAAACACACACACCAAAAATTCCTCTCCACTAGGCAGGAAAAGGAAAAGTATC
CGAAAGGAACCTGAAATGAAAACAAAAACATTCTTTTTTCTACG--GACGCGCCAATAAAACAGTAGCACCTGGCACCA-
------CCACCTCTTGCGACAAGGCTGACATTTCCACCTCGCTTCGTCGACCTCGGGTCTCCCCTGCTCTTCATATCTCC
TCTCTCCACCCCCACCCTCCTCCCCGAGCACCAACACCGCCAAGAACGCGAACGCCGACGT---GAGCATCTATCGAGAC
ACAGCAACGCGAGGGCGCACCCCGATCGACCGAGCTGATTAAGAAGATCGAGTG--------ATGCGGAGGTCGGACTGG
GAGGACCGGTGCCGGCGGCACCCGGAGCACCGGCTGTCCAAGGGCGTGTGCCCGAGCTGCCTCCGCGACCGCCTCGCCCA
CCTCTCCGCCAACTCCTCCGCCACCACCACCCTTACGCGCGCCTCCAACTCGGCCAGCACCTCCCCCTACTCCTCCACCG
ACTCCCCGCCGCTCCACCGCGCGGCCCTCTCCGCCGACGCCACCTCCGTCCACGTCGTCGGCTCCGGGGCCGGCTCCTCC
TTCGTCAACGTCTCCGCCTTCTCGCAGCCGCTCATGCCGACGGCCTCAAAGAAACCAGCAGAAGCCAAGGGAAAGGAGGG
CGAGGCGAAGAAGAAGAAGAAGAGCAGCAGCAAGAAGAAGATCGGGCGGTTCCTGTCGAGGCTGGTCGGGACGGAGAAGC
GGCGGAAAACAGGGGAAGCAGGCGACGGCGGCGAGCTCTTCCATTCCAGCACCATGAAGGAGAAGTCGTCGACCAAGTGG
GTCTTCTTTTGATCAGACCGGCCGGCGCCGCCCACCAACCATTATACCAACAAACATGCTTGGCCTTTCTCGGTTCTCGA
TCGATCGGGTATTGATGATTTTTCTTTATTTCCTCTATTATTTTTCACAAGTATTCTTCTTGAGCTTGATTTGATATTTT
CCTCAAGCGCCGTGTATATACACGAGATCAAGTAGCTGACCGTAAGGAGAAGCACACATATATGGTGA-AAATCGCATAT
GGTTATTGATTTTTTTTAAATTAGGACAGAGTGTATAGATGTAAATTAACTTGTATTTGTAT---------CTAGCATAG
TATGCACTACTACTACGTGAATGCTCCTGGGATTCACGAATTATACCATAGCTTTGCTTGAATTTCTTTCTCAGTATCTT
GTGTACTTGGCCTGCATACCTTTGGTCTTGCTACT--TGCTACTTGCTACTATTGCTACT--------------------
-------ATACGGGGGCGATTGAACATATGGAGTATGCAAAATCAGGAGGAACAGAAAGGAATGCTTGCATCATACTCAC
TTCGTTTCAAATTATTCGTCGTGGTTTTAGTTCAAATTTGTACTAAAACCAGGACAAGTAATTTGGAACGGAGGGAGTAT
ACACGCAGTTGGTCACACAGACGCACTGATAGAAGAGTTAATTC----CTTCTATGATTGCTTCTTTGCTACTCCACTCT
TGTCACTTTAGCTTTCTTGTCATGCTTGAATCATCTTTCCATTTTCTCGGCTGCTTTTCATCTTTTAGCTGGTGATGATC
C---GTTTGGACGTGAAACTGGTTGTCTCGATCCGGACTTGTTTCCGTCTCGGCCAAAGCCCAAAGCCCGTCGGCCCGCC
CTGCTTGGATGGGTAAGGCAGCTCGATATCGCGACACGTGCGCCGACACAACCGAATAGCCGCCATGAAAAACAGCATGC
ACCTCTAGGTGCACACAAGCACGTCGGTCGAACTCTCT-CTGCACATATAGACCAAAGTAGCCGTGCTCCGGTGAGCGGG
AACGGTACGTGGCTCATGT
>chr4B_483
TTAT----------------------------------------------------------------------------
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------TTTGCATATCATGGGGGCTAAATAACATGAATATGTCCTTGGTGGCCTTACGGAAAAAGTGATATCACTCTCAT
TTGCGTTGAGGGATCAACTCATGTCGGG--------------------------------CTACTATAGATGCTACAGTT
CCAACACC----------------------------------AAAATCCCTCCCCACTAGGCAGGAAAAGGAAAAGTATC
CGAAAGGAACCCGAAATGAAAACAAAAACATTATTTTTTTTCTATTGACGCGCCAATAAAACAGTACCAGCTGGCACCGT
GCAACTCCACCTCTTGCGACAAGGCTGACATTTCCACCTCGCTTCGTCGACCTCGGGTCTCCCCTGCTCTTCATATCTCC
TCTCTCCACCCCCAC---CCTCCCCGAGCATCAACACCGCCAAGAACACGAACTCCAACAAGACGAGGATCGATCGACAC
G--GCAACGCGAGGGCGCACGCCGATCGATCGAGCTGATTACGATCGATTCAAGCTTTGGCCATGCGGAGGTCGGACTGG
GAGGACCGGTGCCGGCGGCACCCGGAGCACCGGCTGTCCAAGGGCGTGTGCCCGAGCTGCCTCCGCGATCGCCTCGCCCA
CCTCTCCGCCAACTCCTCCGCCACCACCACCCTGACGCGCGCCTCCAACTCGGCCAGCACCTCCCCCTACTCCTCCACCG
ACTCCCCTCCGCTCCACCACGCAGCCCTCTCCGCCGACGCCACCTCCGTCCACGTCGTCGGCGCCGGCGCCGGCTCCTCC
TTCGTCAACGTCTCCGCCTTCTCGCAGCCGCTCATGCCGACGGCCTCAAAGAAACCAGCAGAAGCCAAGGGAAAGGACGG
CGAGGCGAAGAAGAAGAAGAAGAGCAGCAGCAAGAAGAAGATCGGGAGGTTCCTGTCGAGGCTGGTCGGGACGGAGAAGC
GGCGGAAAACAGGGGAAG---GCGACGGCGGCGAGCTCTTCCATTCCAGCACCATGAAGGAGAAGTCGTCGACCAAGTGG
GTCTTCTTTTGATCAGACCGGCCGGCACCAGCTACCAACCATACGAAC------CATGCTTGGCCTTTCTCGGTTCTCGA
TCGATCGGGTATTGA----TTTTCTTTATTTTCTCTGTTATTTTTTGCAAGTATTCTTCTTGAGCTTGATTTGATATTTT
TCTCAAGCGCCGTGTATATACACGAGATCAAGTAGCTGACCGTAAGGAGAAGCATACATATATGGTGAGAAATTGCATAT
GGTTATTGATTTTTTT------AGGACACAGTGTATGGATGTAAATTAACGTGTATTTGTATCTAGTTTCTCTAGCATAG
TATGTACTGTGTGAATGGCTT-----CTGGGATTCACGAATTATACGACAGTTTTGCTTAATTTTCTC------------
-------------GCATACCTTTGGTCTTGTTACTATTGGTACTTGTTACTTGTTCTGACGACGC----ATATGAGACGA
AGATAGCATACGGGAGCGATTGAACATACTATGCA---AAAATCAGGAGGAAAAGAAAGGAATGTTTGCATCGTATTCAC
ACG-----------------------------------------------------------------------------
-------GATGGTCACACAAACGCACTGATAGAAGAGTTACTTC----CTTCTATGATTGCTTCTCTGCTACTCCACTCT
TGTTACTTTAGCTTTTTTGTCATGCTTGAATCATCTTTCCATTTTCTCGGCTGCTTTTCAACTTTTAGTAGCCGGTGATC
CATCGTTTCGACGTGAAGCTGGTTGTCTCGATCCGAACTTGTTTCCGTCTTGG-------CCAAAGCCCGTCGGTCCGCC
CTCCCTGGATGGGTAAGGCAGCTCCAGAACGCGACACGTACGCCGACACAATTGAATAGCCGCCATGAAAAACAGCATGC
ACCTCTAGGTGCATACAAGCACGTCGGTCGAACTCTCTTCTGTACATATGGACCAAAGTAGCTGCGCTCAGATGAACGGG
AACGGTACGTGGCTCATGT
>chr4D_675
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---ACACC----------------------------------AAAATCCCTCTCCACTAGGCAGGAAAAGGAAAAGCATC
CTAAAGGAACCCGAAATGAAAAAAAAACATTCATG-TTTTTCTTTTGACGCGCCAATAAAACAGTACCACCTGGCA----
------CCACCTCTTGCGACAAGGCTGACATTTCCACCTCGCTTCGTCGACCTCGGGTCTCCCCTCCTCTTCATATCTCC
TCTCTCCACCCCCAC---CCTCCCCGGGCATCAACACCGCCAAGAACACGAACGCCAACACGACGAGGATCGATCGACAC
G--GCAACGCGAGGGCGCACGCCGATCGGTCGAGCTGATTACGATCGATTCGAGCTTCGGCCATGCGGAGGTCGGACTGG
GAGGACCGGTGCCGGCGGCACCCGGAGCACCGGCTGTCCAAGGGCGTGTGCCCGAGCTGCCTCCGCGACCGCCTCGCCCG
CCTCTCCGCCAACTCCTCGGCCACCACCACCCTGACGCGCGCCTCAAACTCGGCCAGCACCTCCCCCTACTCCTCCACCG
ACTCCCCTCCGCTCCACCGCGCCGCCCTCTCCGCCGACGCCACCTCCGTCCACGTCGTCGGCGCCGGGGCGGGCTCCTCC
TTCGTCAACGTCTCCGCCTTCTCGCAGCTGCTCATGCCGACGGCCTCGAAGAAACCAGCAGAATCCAAGGGAAAGGAGGG
CGAGGCGAAGAAGAA---GAAGAGCAGCAGCAAGAAGAAGATCGGGAGGTTCTTGTCGAGGCTGGTCGGGACGGAGAAGC
GGCGGAAAACAGGGGAAGCAGGCGATGGCGGCGAGCTCTTCCATTCCAGCACCATGAAGGAGAAGTCGTCGACCAAGTGG
GTTTTCTTTTGATCAGACCGGCCGGCACCGGCCACCAACCATACGAACAAAC--CATGCTTGGCCTTTCTCGGTTCTCGA
TCGATCGGGTATTG----TTTTTCTTTATTTTCTCTGTTATTTTTTACAAGTACTCTTCTTGAGCTTGATTTGATATTTT
TCTCAAGCGCCGTGTATATACACGAGATCAAGTAGCTGACCGTAAGGAGAAGCACACGTATATGGTGAAAAATTGCATAT
GGTTATTGATTTTTTT------AGGACAGAGTGTATAGATGTAAATTAACGTGTATTTGTATCTACTACTCTATCTAGCT
AG------------------------------------------------------------------------------
---------------------------TTGTTACTATTGGTACTCGTTACTTGTTCTGATTGACGATGTATATGAGACAA
AGATAACATACGGAGGAGATTGAACATACGGAGTATGCAAAATCAGGAGGAAGAGAAAGGAATGTTTGCATCGTAT----
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ACACGCAGATGGTCACACAAACGCACTGATAGAGAGAATTAACTTCTTCTTCTATAATTGCTTCTCTGCTGCTCCACTCT
TGTTACTTTAGCTTTTTTGTCATGCTTGAATCATCTTTCCATTTTCTCGGCTGCTTTCCATCTTTTC---GCCGGTGATC
CATCGTTTCGACGTGAAGCTGGTTGTCTCGATCCGGACTTGTTTCCATCTTGG-------CCAAAGCCCGTCGGTCCGTC
CTGCTTGGATGGGTAAGGCAGCTCCAGAACGCGACACGTACGCCCACATAACTGAACAGACACCATGAAAAACA------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS---S----SS---S-S--S-S-S-----------------SSSSSSSSSS------------------------
-----------S-----S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-SS---------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------------------------------
-----------S--------------------S------S-SSS----------------------S-----------S-
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---------------SSS------------S----------------S--------S--SS------S---S-----S--
SSS-----------------S--------S-----------S--SSSSSSS-S---------------------------
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---------------------------------S----------------------------------------------
-------S--------------S---------------------------------------S-----------------
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----------------------------------------------S---------------------------------
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--------------------------S---S-----------SSS-S---SSSS--------------------------
---------------SSS-------------S----S--------S----------------------------------
S------------------------------------------------------------------------S------
----------------SSSSSS----------------------------S-----------------------------
----S---SSSSSS-S-SSSSSSSSS--------------------S-S--S-------S-S-----SSSSSSSSSSSSS
SSSSSSSSSSSSS-----------------S--------S------S----SS-S--SS---------------------
----------------------------S-----------------------S-----------S-------S--S----
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
--------S----------S---------------------------------------------S--------------
---S-----------S----------------------------------------------------SS-SS-S-----
--------S--------S--------------------------------S--SSSSSSS--------------S-----
------------------------S-S-S----------S------------S---------------------------
-------------S----------------------------S------S------------S-S----S-S---S----
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>forward_254
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--------------------------------------------------------------------------GCGGCC
GGCTATTAACTAGT------------------------------------------------------------------
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>reverse_1929
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--------GGCCTGCATACCTTTGGTCT----------------------------------------------------
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