>input_sequence_77905
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--------------------------------------------ATGGCTGACAAGTGCGGCAACTGCGACTGCGCCGAC
AAGACCCAGTGCGTGTAAGTG-----CCTACCAGACAGCCAGATCGAGCTAATTAAGCCTCTTGTCGATCGAGCTAATCC
ATCGATCTGATCCGTCTTCTCTACGTGCCTCTAACTA--------GCCACTAGCTAAAAATCAACATCGTCTCTATGTAG
TCCGATGTTTGTATTGATCTTTGTCTTTGCTCTACTCTCTCTCT--CTGAACATGTTCCTGTGGTTTTT--------TCA
TGCGTGCAGGAAGAAGGGCGACAGCTACGGCGTCGTCATAGTTGACACCGAGAAGAGGTACCGCGTACTATTTC------
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--------------------------ACTTCATCCATCCGCCTGTTCGGCTAGTGGCTAGTTAGAGGACAGAAAAACTAG
T-----------------------------CAGATCGATGGCAAGTTATCTACGTGCCGTCTCGGCAAGTTATCGAGGTG
CAGGAGACCGCGGACAACGACGGCAAGTGCAAGTGCGGCACCAGCTGCACCTGCACCAACTGCACCTGCGGCCACTAA--
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>chr3B_1_TraesCS3B01G158700
ACTCATGTGCGCGACGATGACTTTGAAAAAATCGAATCGTTTTCTTGACTTATGAGTGGCACAGCGGGTAATTTATAGCA
ACTTTAAGGGTATTTTTTTTTACGGACGACCAGAAGCACTATTTGCTTTATTAGTAGGGAAAGATTTAGGTCGGTGAAAT
TTGCCTCTTTAGTCGATATCCGCGTGCGAGAAAGGCACAACCATGAGGACGGGAGGGGGTGATGAACGAACCACGACGAC
CTTGACGGGAGCGAGGCAGAAGCTTGACAGGTGCGGGTGCGGGGGTTCACTGACGCTGAAGAAGGGTTGTGTTTAGATAT
TGGTCGAGGGAAGGGGGCAGTGGGTTGGTCCACATATGAGGCAGCTTGGGGAGGACATTGCGAGATTGTTCATCCTACAC
CGGATAGAGGTTCGTTGGGTTTGAGTGGAAAAACACGGTTTGAGGAGATAGAAGCCTCCAGAAAATTGATTTCCAAGCTT
ATAGTTTTTCATTAGATTAGTTTTTGTAGCAACTATTTATGTATTTTTTAACAAATTTACGGCAGCAAATACTCCCCCGA
TCTCAAATAGGGCTAGAAAAAAAGAAAATATACGATCAATAATAATTGGATATAAAGAGCTACTCTAGAGAGAAGGATCC
GGAAGAGCTAGGCATCGGCATCGATGGGGGTATCTGGGAAAGGCAAGATGGACGGACACGGCCGGCCGGTGAAGAAGGAA
ATTGGTACGCGTGCCCTGCGCGTGCGGTGACGGTGAGAGATTCCTATCGCG----TAGCTAGAGTTCCTCCCGTCCCCAG
CCCGGGCCGGACCGGCAGGTTCCCTCCCTATCCAGGTCTCAAGCCCTGGCTCTCGCGAACCCTCCTCCTCCGGCCAGGCA
GGCGGCTATATATACCACCGCAAAGCAGCGGCCATTGCTCGCTCCTCACCAAGCAAGAGCATAATTAATCAACCACAAGT
CCATTTGCGAAGCACTCTCGCTCCGATCACAACCCAAGACCACCATGGCTGACAAGTGCGGCAACTGCGACTGCGCCGAC
AAGACCCAGTGCGTGTAAGTG-----CCTACCAGACAGCCAGATCGAGCTAATTAAGCCTCTTGTCGATCGAGCTAATCC
ATCGATCTGATCCGTCTTCTCTACGTGCCTCTAACTA--------GCCACTAGCTAAAAATCAACATCGTCTCTATGTAG
TCCGATGTTTGTATTGATCTTTGTCTTTGCTCTACTCTCTCTCT--CTGAACATGTTCCTGTGGTTTTT--------TCA
TGCGTGCAGGAAGAAGGGCGACAGCTACGGCGTCGTCATAGTTGACACCGAGAAGAGGTACCGCGTACTATTTC------
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--------------------------ACTTCATCCATCCGCCTGTTCGGCTAGTGGCTAGTTAGAGGACAGAAAAACTAG
T-----------------------------CAGATCGATGGCAAGTTATCTACGTGCCGTCTCGGCAAGTTATCGAGGTG
CAGGAGACCGCGGACAACGACGGCAAGTGCAAGTGCGGCACCAGCTGCACCTGCACCAACTGCACCTGCGGCCACTAAAG
A--------------GGCCTCTCGTCA----CGTACGCGTCTACCCGTACTAGTAACCCGCCCCAATAAAAGTCTGTACG
TGTGTGTG----TCTACGTCTCTTCTGTTGTCG---TGCGAAAACCTGAAGGTTA-GCTGATGATGTGTGCGTAGGATAT
CGAATCGGCGTT---GATCGATCCCGTGT---TCCCCTGTAACCAGTGGCTGAACTTCAGGTTGTACTACTATGTGGTTG
TGAGCCCGCACGCTCTGTGCCATGTGACTTTCATTTCGTGTATCTTTGTTGCATGGGATGAAATTTATCGTGTGGTTTCT
TAGCAACTCCCTCCGTCTCCG-----------------------------------TCGCATAATATAAGATTGTTATAT
TATGGGACGGATGGAGTAGTAAACGTCTCTTTGGTTGTCTTTTTATCGAGCGTATATACAGATCGGGTTGGCAATTAAGC
------------------------------------------------------AACACGCAACAAAACTTGTCTCGGCT
TTATTGATGAAATTTTATTTTTGAGTTGTTTTATTATTGACGAAACTTAGCAGGTTCTTTACACTCC-CGCACGAAGGTT
AGACACAGAACACACACA--AGTATAGGCAGTTATTGAGCGCTGCAGAAGGGAAACAAAACAAATCACAAAAAATGTTGG
ACCTAGCTTCTGCTAGACATAGTCTCCACAATGTCCATTGTTATCCAACAAAATCGGAGTCGGGATATGCACCCTATATA
GTGTAGTGTGAAGAGTTGCGAAAATCACCCAAGGGTTCGCATACCTATAAATACATTATAAATTAGGCTAAAATGTTTTC
TCAAAAGGTGAACAAAATTCTGGCTGGTCAAAATTGCAACCAAACGAAGCAGGCCTTTGGACGACCAGCTTTAGTTCAGA
TTTTCTTTTGAGTGAAAGCTTTAATTCGTTAGGAACCCATGCATTCCTCCTCTTAGATGAGCAGTTTTAAAGGTCCAAAT
CTCTTGTATTAGTCAAATCGAGTCCGTGAAAATTGAGACCGGCTAGGTCTCTCCTGCTATGTGAGACTTCCTATAGGAGC
TC
>chr3D_561
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TCTCAAATAAGGCTAAAAAAAGG---AAAATACGATCAATAAT---TGGATATAAAAAGCTACTCTAGAGAGAAGGATCC
GGAAGAGCCAGGCATCGGCATTGATGGGGGTATCTGGGAAAGGCGAGATGGACGGACACGGCCGGCCGGTGAAGAAGGCA
ATTGGTACGCGTGCCCTGCGCGTGCGGTGACGGTGAGAGATTCCTTTCGGCTAGCTAGCTAGAGTTCCTCCCGTCCCCAG
CCCGGGCCAGACCGGCAGATTCCCTCCCTATCCAGGTCTCAAGCCCTGGCTCTCGCGAACCCTCCTCCTCCGGCCAGGCA
GGCGGCTATATATACCACCGCA-AGCAGCGGCCACTGCTCT----TCACCAAGCAAGAGCATAACCAATCAACCACAAGT
CGATTTGCGAAGCACT----CTCCGATCACAACCCAAGACCACCATGGCTGACAAGTGCGGCAACTGCGACTGCGCCGAC
AAGACCCAGTGCGTGTAAGTG-----CCTA---GCCAGCAAGATCGAGCTATACATAAACCTTTCTG----------TCG
ATCGAGCTGATCAATCTCTTCTGCATACCTCTAACTTGCTGTCTTGCTTCTAGCTACTCCACATGATCTTCATCTTCGTA
-------TTCGTATCGATCTT--TCTTTGCTCCACTCTGTCTCTGTCTGAACATGTTCCTGCGGTTTTG--------TCA
TGTGTGCAGGAAGAAGGGCAACACCTACGGCATCGTCATGGTTGACACCGAGAAGAGGTACTG-----------TACTAT
TTCGGTTCGTTGATCCGCCGTTAAGCT-----------------------------------------------------
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----------------------------------------------------------------AGAACAAAATAACCAA
T-----------------------------TAACGTTGGTCACTTGGTGCATGCATGTGCAGCCACT-----TCGAGGTG
CAGGAGACCGCGGAGAACGACGGCAAGTGCAGCTGCGGCACCAGCTGCACCTGCACCAACTGCACCTGCGGCCACTGAAG
AAGCCCTCCCCGCTGGGCCTCTCGTCA----CGTACGCGTCTACCCGTACTAGTAACCCGTGCCAATAAAAGTCTGTACG
TGTGTGTGTGTGTCTACGTCTCTTCTGTTGTCG---TGCGAAAACCTGAAGGTTAAGCTGATGATGTGCGCATAGGATAC
CGGATCGGCC-------TCGATCCCGTGT---TCCCGTGTAACCGGTGGCTGAGCTTCAGGTTGTACTGCTATGTGGTTG
TGAGCTCGCACGCTTTGTGCCATGTGACTTCCATTTCGTGTATCTTTGTTGCATGGAATGAAATTTATGGTGTGGTTTTC
TAGCTACTCCCTCCTTCCCATAATATAAAAACTTTTTTGACACCACACTCTTACATTCTTATATTATTATGCTCTTATAT
TATGGAACAGGAGGAATAGTAAACGTCTCTTTGGTTGTCTTTCTATCGAGCGTGTATACAGATCGGGGCGGCAATTAAGC
AACAACTGGTGGTATCTGTTTTATTTTTATCATGATATAAAAGATATTTTTTAGAACACGCAACAAAACTTGTCGCGGCA
CTG--------------TTTTTGAGTTGTTTTATTATTGACGAAACTTAGCAGGTTCTTTACACTGCGCGCACAAAGGTT
AGACACAGAACACATAAGGTAGTATATGCAGTTATGAAGCGTTGCAGAGGGGAAACAAAACAAATCAGAAAAAATGTTGG
ACCTAGCTTCTGCTAGACCTAGGCTACACAACATCCATTGTTATCCAACAAAATCGGAATCAAGATATGCACCCTATATA
GTGTAGTGTGAAGAGTTGCAAAAATCACCCGAGGGTTCGCATACCTATAAAT----------------------------
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>chr3A_860
CCTCCC--------------------------------------------------------------------------
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--------------------------------------------------------------------TCCGGCCCGGCG
CGCGGCTATATATACCACCGCA-AGCAGCGTCCATTGCTC----CTCACCAAGCAAGAGCAAAACCAATCAACCACAGGT
CGATCGATTCGCGAAGTACCCTCCGATCACAACCCAAGACCGCCATGGCTGACAAGTGCGGCAACTGCGACTGCGCCGAC
AAGACCCAGTGCGTGTAAGTACAGTACCTACCACACAGCTAGATCGAGCTAAT---------------------------
-----------CCGTCTCTTCCACGTGCATCG---------------------------------------TCTGTATAG
TCCGATCTTCGTATCGATCTTTG------CTCTACCCTGTCTGAAT----ACATGTTCCTGTGGTGGTTCTGTCATCTCA
TGTGTGCAGGAAGAAGGGCGACGGCTACGGCATCGTCATGGTCGACACCGAGAAGAGGTACTGCGCACTAGTAGTAGTAT
TTCACTTCGCTGATCCGTTCCGGTTTACCTTAAACTATACTATGTAGAAAGTAGAAACTAATCGGTTGAAACTGCCCACA
CACGCACACACACACAAAGTAAATTTATGACATGGTCACACAAAGCTTAGCTTGCTGAGAGATTAGCCAAAATTAAATCC
AGTTGCAAGATCTACTCCATGGAAGGACTTCATCCAGGACGATCTTGATATAGCCTCCG------GAACTAAATAAAAAT
TGATTTGACTAGAGATCTCTATCGAAGACCTAACGTTGGCC--------CATGCATGTGCAGCCACT-----TCGAGGTG
CAGGAGGCCGCGGAGAACGACGGCAAGTGCAAGTGCGGCGCCAGCTGCACCTGCACCAACTGCACCTGCGGCCACTGAAC
AGGCCCGCCCCGCTGGGCCTCTCGGTCATCGCGTACGCCTCTACCCGTACTAGTAACCCGTGTCAATAAAGGTCGATC--
TGTACGTGTGTGTCTACGTATGTTGTGTTGTCGTCGTGCAAGAACCTGAAGGTTG-GC---TGATGCGTGCATAGGATAG
GATCTTGGATCAGCCGATCGGTCCCGTGTTCCTCCCCTGTAACCAGTGGCTGAGCTTCAGGTACTACTACTATGTGGTTG
TGAGCTCGTACGTGTTGTGGCATGTGACTTC-ATTTCGCGTATGCGTGTTGCACGGAATGAAATTTGTCGTGTGGTTAAC
TAGT-ACTTCCTCCGT----------------------------------------------------------------
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>SNPs
S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---------S-----S-----SSSSS--S--------------SSS----------S-----------------------
--------S------------S----------------------S---------------------------------S-
---------------------------------------------S---SS-----------------------------
--------S---------S-------------------------------------------------------------
----------------------S-----------------SSSS--------------------SS--------------
-S--------------SS-S------------------------------------------------------------
---------------------------------------S-------------S-SSSSS---SSS-SSSSSSSSSS--S
-----S-----------SS-----------------S----------SS-------SSSSS--SS---S-----S-S---
------S--S----S-----------------------S-----------------------------------------
--S----------------------------S-------S---------------------S---S----S-SS------
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------------------------------------SSSSSS-S--SSSS---SSS-SSSSSSS--S---S--S---S-S
------------------------------S-SSSSSSSSSSSSSSSSS-SSSSSSSS-SSS-SS-SSSSSS--------
--------------S-------------------------------------------------------------S---
------------------------------------------------------------SS------------------
-----------------------------------------------------------------------S-------S
--S------SSS-----------------------------------------S--------------------------
-----S--------S---------------S-------------------------S---------------------SS
----S------------S-SS-------------------------------------SS---S---S-SSS-S------
-----S--S-SS---S--------------------------S----------S-------------SS-----------
--------------------------------------------------------------------------S----S
S-SSSSSSSSSSSSSSS------------------------------------------------S-------S------
--------------S-SS--------S--------SS----S------S------------------S------------
------------------S---S--S-----SS-------------------------S--SS-----------------
-------------------S----------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_302
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------------------------------------------GGGTTCACTGACGCTGAAGA------------------
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--
>reverse_1920
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-------------------------------------------------------------------------------T
CGAATCGGCGTTGATCGAT-------------------------------------------------------------
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--
