>input_sequence_77893
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----------------------------------------------------------------------ATGGCTGGTG
GGCAAGTGGCGGCGCACAGGGCGTTCCTGCTCTGCAACTACTTGCTTCTAGGCGCGGCGTCGGGCTGCATCTTCCTCACG
ATCTCGCTCCGCCTCGTCCCATCCCCGTGCGGCCTGCTCCTCATCTTCCTCCACGCGCTAACCGCGGTCTTTGCCGCGGC
TGGCTGCTCGGGCTCCTTCACTACCCCCGCAGCC-----GGCGCCGGAGCCCAGCACACTGCGCACACCACCGGTGCCGT
CCTCACTGCCATCTTCCAGGGTGCTGCGGCCGTGCTCGCATTCACCCGCACGGCTGACTTCCTCACCGAGCTGCGGTCCT
ATGTCCGGGAAGAGGACGGCACGGTCATCATCAGGCTCGTCGGCGGTCTTGGCGCCGCCATCTTCGTGCTCGAGTGGGCC
TCACTCGCGCTCGCCTTCGCTCTTCGGCTCAGCGAAGATGGTGGCGAGGAGGCAACCGACAGCGGCGAGTACACCAAGAG
CTTGCCGTCTGGCTACCACGTCTGA-------------------------------------------------------
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>chr1B_1_TraesCS1B01G338000
ATTCTGGCTGGAGTTAATGTTGCAGTCAGACAACTAGCATTAACACAAAAAGAAGGTGCAACAAGGCAGGGAATAATATA
ACTACCTTTACACGACAGGGAACCACTGGCTCAAGGAAAAAATATATCAGCGACCAGTACAACCCCATGGTGGACCTGGT
GACTGTAATATCAGCTTTGAACTTCTCACTGATCGAGAATTTACCACTGTCAAATGTACATTTCTCTGCAATGAAAGTGA
GGAAACGGGAATACGTCTTTGGCTCGGGCTCTCCATCCATCACAACATCAGACCTATGGTATTGCATTGACGTTGCCATT
ACCAGAAAGGTTTTCACTCCACTTTATAAATAAAGCAAACCGCCACAAGTCACATAGAGTTCACACAGGATACAAACACA
CTCACACACAGGTCAGCCACACATAAACACACACAAAGTGCCAGAACAAAGGTTCTGATGAGGGTACCAGCTCAAAAAGC
CCAAAATAAGAATAGAAGGTGATAAGATGAACAGATGGCAGCGCCTAGTCTGCCTTTGGAGGTGGTGGCAGCATGGGAGG
CGACAGCCGAAGCGCCAAGGTCCTAAATCCCGCGAAGATAGCGACGATGGCGCCTCGGTCTTGGGGCCGGCTAAGTTGGA
GAACATCAAGCTTTG-TTTGTCAGAAGGGCAGTCCAGTGTTGCAAGTTGGAACATGGTGTGATATGATGATGTCACCTAC
TCTTGGTTTTTGTGATAATTAGTCAGTCCAGATCGCAACGTC----------------TCTCTTTCTCTTCCCACGCTCT
CACTAG---CTAGCCGTTAAGCCAACCCCTCGCCGTCCAACGGTAGCAAATGAGATTCCCTTCGCACGCCATTGACTATA
TTAATCACGCTTGCCCACTC----TCTGCTTCATCCAACAATCTCAAGTCACCACCATCTTCTTGCCATT--CAGTCTCC
TTGCTTCAGTT-GCTTGTGAGTGATCAAGAATAAATC---AGCTTGCGGTGTCGGCACACAGCAGCAGCAATGGCTGGTG
GGCAAGTGGCGGCGCACAGGGCGTTCCTGCTCTGCAACTACTTGCTTCTAGGCGCGGCGTCGGGCTGCATCTTCCTCACG
ATCTCGCTCCGCCTCGTCCCATCCCCGTGCGGCCTGCTCCTCATCTTCCTCCACGCGCTAACCGCGGTCTTTGCCGCGGC
TGGCTGCTCGGGCTCCTTCACTACCCCCGCAGCC-----GGCGCCGGAGCCCAGCACACTGCGCACACCACCGGTGCCGT
CCTCACTGCCATCTTCCAGGGTGCTGCGGCCGTGCTCGCATTCACCCGCACGGCTGACTTCCTCACCGAGCTGCGGTCCT
ATGTCCGGGAAGAGGACGGCACGGTCATCATCAGGCTCGTCGGCGGTCTTGGCGCCGCCATCTTCGTGCTCGAGTGGGCC
TCACTCGCGCTCGCCTTCGCTCTTCGGCTCAGCGAAGATGGTGGCGAGGAGGCAACCGACAGCGGCGAGTACACCAAGAG
CTTGCCGTCTGGCTACCACGTCTGAGTCCGGTTCAGCCGTGGCCACTGGCCAGAGCCTGTCGAGATGGAGATGGACGGAG
AGGCAAAATGAGGATATGTCTTTTTTCTTGTATATAAGTTAGTACAATTTAATTATTGTACCAGTACGAAATATGCAAAG
GCGAACATATTGTTTTGCTTACTGCATACGTTATATATTTTTACTGTATCTGGTATAA-CGTGGAGGGGGTTTCTTTCTT
CACTATATTAAGAATGATCCTGTTGTGATAAATTTTTTGGACAAAATTTTGTGGATAAGTTGTAAGTGTAGGGTTCGGGC
ATTCTGCTAGTGATTCCCCTCGATTCTTAGCTGTTAAAGTAACATTTCTGCTCATTGGATTGAAAGATATGCAAAGGCAA
ACATACACTCACTGCTTTGCTTTACACATTCGGTAGTTATTATACTTCCGTTCTTTACTCCTTTCATTTAGTCAGCGTGT
AAATTGGATAAAGGAATCGACCTTTCCTCTCGCAACTGCATCGCCCCTACGGTTGACCGGCCGCGCGTCGACCTCCTCCT
CATCCAGCCCCCTTCTTCCCTTCCTCCCCACCGCCGTCACTTGCACGCATGGCCGGCCTAGCCCCGGAGACGCTGCTGGC
AGCGGCCCCCTGACCATCCCCTCCCGGTGGCTCTCCGGTGCGAGGCGGAGCTGCACCGGGGGGTGCTCCTTCGTGGCGAC
GGGCTAGTTGGCGACGGGGTTCCCCGATGCGGTGCGGGCGGGCAGCGCCGTCGTTGGCGGCGGGGTGGCGCAGCGGCACG
ACCAGGCGGCAGCGCTCGGCCGAGATCTGGGCTCTACAGGCCCATCTGGGCCTAGGCGGGCCGTCGGCGGGGCTGGTCTG
CGGCGATGAGCGGCTGGGTGCTGGCGGCGCTGACGCCAGCCTGCTGTAACATGGCTAGGTGTTGGCGGCGCCAACCCCTG
GGAGGCGGGGGAGTGGCGATGAGCGGTTGGGTGCTAGTGGCGCCGACACCAGCCTGCTGTAACATG
>chr1D_638
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-----------------------------------------------------------------------------GGA
GAACATCAAGCTTTCTTTTGTCAGAAGGGCAGTCCAGTGTTGCAAGTTGGAACATGGTGTGATATGATGATGTCACCTCC
TCTTGGTTTTTGTGATAATTAATCAGTCCAGATCGCAACGTC----------------TCTCTTTCTCTTGCCACGCTCT
CACTCG---CTAGCCGTTAAGCCAACCCCTCGCCCTCCAACGGTAGCAAATGAAATTCCCTTGGCACGCCATTGACTATA
TTAATCACGCTCGCTCACTCACGCTCTGCTTCATTCAACACTCTCAAGTCACCACCATCTTCTTGCCTCTCACAGTCTCC
TTGCTTCAGTTTGCTCGGGAGTGATCAAGAATAAATC---AGCTTGCGGTGTCGGCAGACAGCAGCACCAATGGCTGGTG
GGCAAGTAGCAGCGCACAGGGCGTTCCTGCTCTGCAACTACTTGCTTCTGGGCGCGGCGTCGGGCTGCATCTTCCTCACA
CTCTCGCTCCGCCTCGTCCCATCCCCGTGCGGCCTGCTCCTCGTCTTCCTCCACGCGCTCACCGCGGTCTTTGCCGCGGC
TGGCTGCTCGGGCTCCTTCACTACCCCCGCAGCT-----GGCGCCGGAGCCCAGCATACTGCGCACACCGCCGGTGCCGT
CCTCACTGCCATCTTCCAGGGCGCTGCAGCCGTGCTCGCATTCACCCGCACGGCTGACTTCCTCACCGAGCTGCGGTCGT
ATGTCCGGGAAGAGGACGGCACGGTCATCCTCAGGCTCGTTGGCGGTCTTGGCACCGCCATCTTCGTGCTCGAGTGGGCC
TCGCTCGCGCTCGCCTTCGCTCTTCGGCTCAGCGAAGACGGCGGCGAGGAGGCAACCGACAGCGGCGAGTACACCAAGAG
CTGGCCCTCTGGCTACCACGTCTGATTCTGGTTCAGCTGTGGCCATTGGTGTGAGCCTCTCGAGATGGA--TGAACGGAG
ATGCAAAATGGGGATATTTCTTTTTTCTTGTAA-----TTAGTACAATTTAATTATTGTACTAGTACGAAATATGCAAAG
GCAAACATACTGTTTTGCTTACTGCATACGTTATAT----TTACTGGATCTGGTATAATCGTGGAGGGAATTTCTTTGTT
CACTGTATTAAGAAAGATCCT-----------------------------------------------------------
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>chr1A_640
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-------------------------------------------------------------------------------A
GAACATCAAGCTTTG-TTTGTCAGAAGGGCAGTCCAGTGTTGCAAGTTGGGACATGGTGTGATATGATGATGTCACCTCC
TCTTGGTTTTTGTGATAATTAATCAGTCCAGATCGCAACGTC----------------TCTCTTTCTCTTGTCACGCTCT
CACTCG---CTAGCCGTTAAGCCAACCCCTCGCCCTCCAACGGTCGCAAATGAAATCCCCTTCCCACGCCATTGACTATA
TTAATCACGCTCGCTCACTCAC----TGCTTCATCCAACACTCTCAAGTCACCACCATCTTCTTGCCTCTCACAGTCTCC
TTGCTTCAGTTTGCTTGGGAGTGATCAAGAATAAATC---AGCTTGGGGTCTCGGCAGACAGCAGCAACAATGGCTGGTG
GGCAAGTGGCGGCGCACAGGGCGTTCCTGCTCTGCAACTACTTGCTTCTGGGCACGGCGTCGGGCTGCATCTTCCTCACA
CTCTCGCTCCGCCTTGTCCCATCCCCGTCCGGCCTGCTCCTCGTCTTCCTCCACGCGCTCACCGCGGTCTTTGCCGCGGC
TGGCTGCTCGGGCTCCTTCACTACCCCCACAGCC-----GGCGCCGGAGCCCAGCACACTGCACATACCGCCGGTGCCGT
CCTCACTGCCATCTTCCAGGGTGCTGCAGCCGTGCTCGCATTCACCCGCACGGCTGACTTCCTCGCCGAGCTGCGGTCCT
ACGTCCGGGAGGACGACGGCGCGGTTATCCTCAGGCTCGTCGGCGGTCTTGGCGCCGCCATCTTCGTGCTCGAGTGGGCC
TCGCTCGCACTCGCCTTCGCTCTTCGGCTCAGCGAAGACGGCGGCGAGGAGGCAACCGACGGTGGCGAGTACAGCAAGAG
CTTGCCGTCTGGCTACCACGTCTGAGTCTGGTTCAGCTGTGGCCACTGGCCAGAGCCTGTCGAGATGGA--TGAACCGAG
AGGCAAAATGAGGATATTTCTTTTTTTCTTG-TATAAGTTAGTACAATTTAATTATTGTACCAGTACGAAATATGCAAAG
GCAAACGTACTGTTTTGCTTACTGCATACGTTATAT----TTACTGGATCTGGTATAT-AGTGGAGGGGATTTATTTGCT
CACTATATCAGGAAAGATCCTGTTGTGATCAAT-----------------------------------------------
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>chr1B_667
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---------------------------GGTAGTCCAGTGTAACAAGTTGGAACATGGTGTGATATGATGATGTCACCTCT
T-TTGGGTTTTGTGATAATTAATCAGTTCACACCGCAACGTCTCTCTTTGTGATTATCTCTCTTTGTCTTGTCATACACT
CACTAGTCACTAGCCGTTAAACCAAACCCCTCTCCATCAGCACTCGAAAAT-AAATCCCGTTCGCACGTCATTGACTATA
TTAATCTCGCTGACTCACTCTC---------------ACACTCTCAAGTCATCACCACCATCTTCTTGACCCTGTA--CC
TCGCTCCAGTTTTCTTGGGAGTAATAAAGAAGAAGAAACTAGCTTGCGATGTGGGCAGAAAGTAGCAACAATGGCTGGCG
GGCAAGTGGCAATGCACGGGGCGTTCCAGCTCTGCAACTATTTGCTGCTGGCAATGGCGTCGGGCTGCATCTCCCTCGCG
CTTCCACTCCGCCTCGTTCCATCCCTGTGCTGCAGCCTTCTTGTCTTTCTGCACGCTCTCACCGTCGTTTTCGCTATGGC
CGGCTGCTCGGGCTCGTTCACTACCACCGCCGGCACCTGGGCGGCTGGGCCCAGCACACTGC------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
------------------------------------------------------------------------------S-
---------------------S------------------------------------------------S---------
----------------------------------S------------------S--------------------------
-----------S--S-------------------------S--------------------------SS-----------
-----------------S---------------------------------------S---------S------------
-------------------------------------------------S------------------------------
S-----------------------------------------S----------------S--------------------
---------------------------------------------------------------------S----------
---------------------------S----------------------------------------------------
-----------------------------S--------------------------------------------------
--S-----------------------------------S--S--------------------------------------
----------------------------S--------S-------------------------------SS--S------
-----------------S--------------------------------------------------------------
--S------S--------------------------SSSS------S----------------------S-------S--
--------------S--------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_371
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-------------------------------AAAGCAAACCGCCACAAGTC-----------------------------
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>reverse_2018
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-----------------CGACCTTTCCTCTCGCAACT-------------------------------------------
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