>input_sequence_77890
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----------------------------------------ATGGGTAGCCCGTCGCCGCCCGGCGCCTCGCACGGCCTGT
TCGGGTCGAGCGGCGTCGGCGGGTTCGGCTACGGCCTCGCCGTCTCCGTCGGCATCCTGCTCGTCGTCTCCACCGTCGCC
TTCGCTGTCTACCTCTGCTGCGCCCGCGCCTCGTC---CACGCCGGTGGCTG---------------ACGCCCGCGGGGT
TCCGGCGCCGGCGCCGCCCCGCC---------ACGACGTCGAGCTCGGCGGCATCGACGCGGCGACGCTGGAGGCGTACC
CGGCGGTGGTCTACAGGGAGGCGAGGAAGCCGGCGTCAGTGGAGCAGCAG---GAGGCGTGCTGCGCCGTGTGCCTGGAG
AGGTACGCGGACAGCGACATGGTCCGGGTGCTGCCGGACTGCGGTCACCTGTTCCGCCGCGGGTGCGTCGACCCCTGGCT
CCGGCAGCGGCCCACGTGCCCGGTGTGCCGGACCTCGCCTCTGCCCAGCCCCGTGCCCACGCCTCTCGCCGAGGTGACGC
CGCTGGCGCTGGCGAGGTA-A-----------------------------------------------------------
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>chr1A_1_TraesCS1A01G011700
TTTTTCGGCCTCCTGTCTGCCTACCTTCGCACGTACTCCCTCCGTTCCTAAATAATATAAGTCGTTTTAAAGATTTTATT
GTGAACTACATACGGGGCAAAATGAATGAACTACATTTTAAAATATATTTATATACATCTATATATAGTTTGTAGCGGAA
TCTCTAAAAAAAGATACATTTAGAAATCAAGGGAGTATATGGTAGGTACATGAACTCACTTGTTGGGTCGACACACACCA
CGTATAATAGCTATCTACCAGACCAGGTACTACCAAGAGGCCCACAAAATTCCATATGTGCTCACATGCATGCACTGCAC
GCATGTTGGCTTTTGGCAGCAGCGCTGATCCTTTTTTTTTCTAGAACAAACGCATGAAACTTTATTCACTAGAAATAAAT
AGTTAAATCCGTTACGAGAAATGGTACAAATTCAAACAGAGGTTTTTCAAACCAATCAAACGCCACAGTAAATCTAGCCA
TACTAGCAAGCCAATATGGGCAGCGCTGGTCCTTAGTAGTAGTACTCCCTCCGGTTTTCTTTTTTACTCTTGTGTATAAA
TATTATCCGAACCCAAAATTTGTAGATTTTGATCATATTTATATGGGAAAAAAATTCAACATCTACTATACTGAAATTAA
AAAGTATTGAAAATATATTCATGAGACATATAATGATAATATTATGAGTATTGTTTTTTTACAAAATTAGTCAAACATAT
CAAAGTTTGACTTTACATAAATCTTACTCCCTCCGTTCGGAGTTACTTGTCACAAAAATGAATGTATCATGATACATCTA
AATTAAAAAGGACAGCTAGGAGTAATTGAAGCCAGTTTCCACAAGAAAAGAAGAAGAAAAGAAAGCCAGTCAACAAAACA
AAACTAGTGATTTCCCGCCATATAGTACAAAACAAATGACCATGGCTAAATCCAGGTGTTGCGGACATAGCATGTCATCC
TGGAACATGAAATCCAGGTGTTGCGGACATATCATGAGCGATGGGTAGCCCGTCGCCGCCCGGCGCCTCGCACGGCCTGT
TCGGGTCGAGCGGCGTCGGCGGGTTCGGCTACGGCCTCGCCGTCTCCGTCGGCATCCTGCTCGTCGTCTCCACCGTCGCC
TTCGCTGTCTACCTCTGCTGCGCCCGCGCCTCGTC---CACGCCGGTGGCTG---------------ACGCCCGCGGGGT
TCCGGCGCCGGCGCCGCCCCGCC---------ACGACGTCGAGCTCGGCGGCATCGACGCGGCGACGCTGGAGGCGTACC
CGGCGGTGGTCTACAGGGAGGCGAGGAAGCCGGCGTCAGTGGAGCAGCAG---GAGGCGTGCTGCGCCGTGTGCCTGGAG
AGGTACGCGGACAGCGACATGGTCCGGGTGCTGCCGGACTGCGGTCACCTGTTCCGCCGCGGGTGCGTCGACCCCTGGCT
CCGGCAGCGGCCCACGTGCCCGGTGTGCCGGACCTCGCCTCTGCCCAGCCCCGTGCCCACGCCTCTCGCCGAGGTGACGC
CGCTGGCGCTGGCGAGGTA-AGGCCGGCGTGAGGCGATCGAGCG-CATGGTGTCTGTCCGCGGACATGGCGTTCTTCAAC
TCTTCTTGGCTTGCTCTCTGTTTTCTTCCCATCTCCATTAGTTTAATTTATACTATACGGCAAGATGCCACATGTAATTA
ATTAATTAATTAGAAGGTGATAAGTTTATATAGCTAGATGTTAGTGAATGTTGTTTTTGCTGATGTGAATTCGTGTATGG
GTTAGGTGGTGTTTGGTTCTCTAGTCCTAGTACTTTTTCTAGTCCCAACTAAAAAGTCTCTAGTCCCTAAAAAGTCCCTC
CCTGTTTGTTTCCAGAGACTAAAAAGTCCCTAGTCGTCCCTTCCTAGAGGCTATTAAATGACCATGTTGCCACTAGTATA
TATAGAAAAATAACAATCAAACAACATCATGGGGTGGCGGGCCAATGGGTGCATGGAGGAGCATTGATGAAAAAGTCTCA
AAAAGACTCTCCTTGAGAGTCTTCTTCATTTAGTCCCAAATGCCTAGTTTAGTCCCTAAAAAGTCCCTCCCGTTTGGTAA
AAAAGTCTCTATGACACAAAAAAGTCTCTGAAACAAACATCCCCTTAGTTTAGTAAGTAAATTGGTGGTATTGATGAAGA
AGAAGACAAATTTGATCAACCATATTTTTAAGATTCAGCAAAGGTACATGGAGGGCTTGATTAAAAAAAATTGCCTCGAA
AGACCACAAATATCATGTTTGTTTCTGGACCCATATCCCCATCAGGGTTCCTCATCACTCCCATTGCTGGAATTAACCAC
GATGGTTTAAAACCAGTCCCGTACGGGCTTGGTACCAAACTACCCGTCACCGAATAGCCACTGTGCCAAAGCCACCGGCA
TTTGTGGTCAACGGGGCTGTGTGGTTTTCAGCCACAAATTGCCACGCTTTGTCAGACCTTATTTTAGGTAAATTTGATCA
AGTTAGATGGATGTTTGGTATTAGAATACCTGAGGCAAACATTTTTTTATGAGCAGTAAACT
>chr1B_996
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-----------------------------------GAGCGATGGGCAGCCCGGCGCCGCCCGGCGCCTCGCACGGCCTGT
TCGGGTCGAGCGGCGTCGGCGGGTTCGGCTACGGCCTCGCCGTCTCCGTCGGCATCCTCCTCATCGTCCTCACCATCGCG
CTCGCCGTCTACCTCTGCTGCGCCCGCGCCTCGTC---CATGCCCGTGGCCGCCGCGGCAGCCATCAACGCCGACGGGAT
T------------CCACCTCGTC---------GCGATGTCGAGATCGGCGGTATCGACGCGGCGACGCTGGAGGCGTACC
CGGCGGTGGTCTACGGGGAGGCGAGGAAGCCGGCCACGGAGGAGCAGCAGC---CGGCGTGCTGCGCCGTCTGCCTGGAG
AGGTACGCGGACAGCGACGTGGTCCGGGTGCTGCCGGACTGCGGCCACCTGTTCCACCGCGGGTGCGTCGACCCCTGGCT
CCGGCAGCGGCCGACGTGCCCGGTGTGCCGGACGTCGCCTCTGCCCAGCCCCGTGCCCACGCCTCTCGCCGAGGTGACGC
CGCTGGCGCTGGTGAGGGTGATGCCGGCGTGAGGCGA----GCC-CCTGGTGTCTCTTCGTAGACGTGGCGTTCTTCACC
TCTTCTGGGCTTGCTCTGTGTTTTC-------------------------------------------------------
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>chr7A_1008
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-----------------------------------------------GCCCGTCGCCGCCCGGCGCCCCGCACGGCCTGT
TCGGGTCGAGCGGCGCCGGCGGGTTCGGCTACGGCCTGGCCGTCTCCGTCGGTATCCTCCTCCTCGTCTGCACCGTCGCC
TTCGCCGTCTACCTCTGCTGCGCCCGCGCCTCGTCGTCCATGCCGGTGGCCG---------------ACGCCCGCGGGAT
TCCGGCGCCGGCGCCGCCCCGCCGCGGCAACGGCGACGTCGAGCTCGGCGGCATCGACGCGGCGACGCTGGAGGCGTACC
CGGCGGTGGTCTACAGGGAGGCGAGGAAGCCGGCCTCGGAGGAGGGGCAGCACGCGGCCTGCTGCGCCGTCTGCCTGGAG
AGGTACGCGGACAGCGACGTGGTCCGGGTGCTGCCGGACTGCGGCCACCTGTTCCACCGCGGCTGCGTCGACGCGTGGCT
CCGGCGGCGGCCCACGTGCCCGGTGTGCCGGACGTCGCCTCTGCCCAGCCCCATGCCCACGCCTCTCGCCGAGGTGACGC
CGCTGGCGCTGCC------GAGGCCGGCGTGAGGCGA----GCCCCCTGGTGTCTCTCCGCGGACATGGCGTCCTTGAAG
TTTTCTGGGCTTGCTCTCTGTTTTCTTCCCATCTGCATTA----------------------------------------
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>chr1D_1017
CGT-----------------------------------------------------------------------------
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-----------------------------------------------------------CCGGCGCCCCGCACGGCCTGT
TCGGGTCGAGCGGCGTCGGCGGGTTCGGCTACGGGCTCGCCGTCTCCGTCGGCATCCTCCTCGTCGTCTCCACCATCGCC
TTCGCCGTCTACCTCTGCTGCGCCCGCGCCTCGTC---CATGCCGGTGGCCG---------------ACGCCCGCGGGAT
TCCGGCGCCGGCGCCGCCCCGCCGCGGCAACGGCGACGTGGAGCTCGGCGGCATCGACGCGGCGACGCTGGAGGCGTACC
CGGCGGTTGTCTACAGGGAGGCGAGGAAGCCGGCGTCAGAGGAGCAGCAG---GCGGCGTGCTGCGCCGTGTGCCTGGAG
AGGTACGCGGACAGCGACGTGGTCCGGGTGCTGCCGGACTGCGGCCACCTGTTCCACCGCGGGTGCGTCGACCCGTGGCT
CCGGCAGCGGCCCACGTGCCCGGTGTGCCGGACGTCGCCTCTGCCCAGCCCCGTGCCGACGCCGCTCGCCGAGGTGACGC
CGCTGGCGCTGGCGAGGTA-AGGCCGGCGTGAGGCGATCGAGCG-CCTGGTGTCTGTCCGCGCACGTGGCGTTCTTCAAA
TTTTCTTGGCTTGCTCTCTGTTTTCTTCCCATCTACATTAATTTATTTTTATACGGCTAGCTAGATGCCATATGTAATTA
ATTAGAAGGTGACACAGTAAGTTTTATAGCT---TAGATGTTAGTGAAGGCTGTTTTTGCTGATGTAAATTCGTGTACGA
GGTTAG--------------------------------------------------------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------------------------------
----------------------------------------------------------S---------------------
-----S----------------------------------S---------S---------------------------S-
--------------------------------S-----------------------------------------------
---------------------------------------S--------------S-------------------------
------------------S-------------------------S----------S------------------------
---------------------------------S----------------------------------------------
----------------------------------------------S---------------------------------
----------------------------------S-----S----S---SSSSSSSSSS--S--------S---------
----SSSSS-S-S-SS--S-SSSS-S--SS-SSS--------------S-S---------------S----------S-S
-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_948
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------------------------------------------------AATCCAGGTGTTGCGGACAT------------
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>reverse_1865
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------------------------AGTCCCTAGTCGTCCCTTCC------------------------------------
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